Quinone



Compound IDCDAMM00978
Common nameQuinone
IUPAC namecyclohexa-2,5-diene-1,4-dione
Molecular formulaC6H4O2

Experimental data

Retention time18.84
Adduct[M+H]+
Actual mz109.029
Theoretical mz109.028
Error5.72
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.4164

Identifiers and class information

Inchi keyAZQWKYJCGOJGHM-UHFFFAOYSA-N
SmilesO=C1C=CC(=O)C=C1
SuperclassOrganic oxygen compounds
ClassOrganooxygen compounds

Pharmacokinetic properties

Number of descriptor values(#stars)9
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)0
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-1
Molecular weight (mol_MW)108.096
Computed dipole moment(dipole)0
Total solvent accessible surface area (SASA)284.553
Hydrophobic component of SASA (FOSA)0
Hydrophilic component of SASA (FISA)128.061
Pie component of the SASA (PISA)156.492
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)416.595
Number of hydrogen bond donors (donorHB)0
Number of hydrogen bond acceptors (accptHB)4
Free energy of solvation of dipole (dip^2/V)0
Index of cohesive interaction in solids (ACxDN^.5/SA)0
Globularity descriptor (glob)0.948008
Predicted polarizability in cubic angstroms (QPpolrz)12.013
Predicted hexadecane/gas partition coefficient (QPlogPC16)4.253
Predicted octanol/gas partition coefficient (QPlogPoct)5.729
Predicted water/gas partition coefficient (QPlogPw)6.279
Predicted octanol/water partition coefficient (QPlogPo/w)-0.789
Predicted aqueous solubility (QPlogS)-0.053
Conformation-independent predicted aqueous solubility (CIQPlogS)0.127
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.12
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)604.64
Predicted brain/blood partition coefficient (QPlogBB)-0.386
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)287.193
Predicted skin permeability, log Kp (QPlogKp)-3.328
PM3 calculated ionization potential (IP(ev))10.991
PM3 calculated electron affinity (EA(eV))1.961
Number of likely metabolic reactions (#metab)0
Prediction of binding to human serum albumin (QPlogKhsa)-1.243
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)72.111
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)61.677
Number of nitrogen and oxygen atoms (#NandO)2
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P22303ACHEAcetylcholinesteraseT30082SwissTargetPrediction
P21397MAOAMonoamine oxidase AT83875SEA
P06276BCHEButyrylcholinesteraseT99799SwissTargetPrediction
P29466CASP1Caspase-1T98269SwissTargetPrediction and SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T30082DI0025Alzheimer disease[ICD-11: 8A20]P22303ACHE
T30082DI0166Glaucoma[ICD-11: 9C61]P22303ACHE
T30082DI0282Myasthenia gravis[ICD-11: 8C6Y]P22303ACHE
T30082DI0313Oesophageal/gastroduodenal disorder[ICD-11: DD90]P22303ACHE
T30082DI0332Pediculosis[ICD-11: 1G00]P22303ACHE
T30082DI0421Unspecific substance harmful effect[ICD-11: NE6Z]P22303ACHE
T83875DI0117Depression[ICD-11: 6A70-6A7Z]P21397MAOA
T83875DI0331Parkinsonism[ICD-11: 8A00]P21397MAOA
T99799DI0324Pain[ICD-11: MG30-MG3Z]P06276BCHE
T99799DI0411Tonus and reflex abnormality[ICD-11: MB47]P06276BCHE
T98269DI0134Epilepsy/seizure[ICD-11: 8A61-8A6Z]P29466CASP1
T98269DI0146Fibrosis[ICD-11: GA14-GC01]P29466CASP1
T98269DI0366Rheumatoid arthritis[ICD-11: FA20]P29466CASP1
T98269DI0417Type 2 diabetes mellitus[ICD-11: 5A11]P29466CASP1

Copyright © 2025