5,7,4\'-Trihydroxyflavanone 7-O-arabinosylglucoside



Compound IDCDAMM00910
Common name5,7,4\'-Trihydroxyflavanone 7-O-arabinosylglucoside
IUPAC name5-hydroxy-2-(4-hydroxyphenyl)-7-[3,4,5-trihydroxy-6-[(3,4,5-trihydroxyoxan-2-yl)oxymethyl]oxan-2-yl]oxy-2,3-dihydrochromen-4-one
Molecular formulaC26H30O14

Experimental data

Retention time0.47
Adduct[2M+H]+
Actual mz1133.34
Theoretical mz1133.34
Error6.82
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.0024

Identifiers and class information

Inchi keyRDZXIOLHICKFEI-JENCJMJWNA-N
SmilesO=C1C2=C(O)C=C(OC3OC(COC4OCC(O)C(O)C4O)C(O)C(O)C3O)C=C2OC(C5=CC=C(O)C=C5)C1
SuperclassPhenylpropanoids and polyketides
ClassFlavonoids

Pharmacokinetic properties

Number of descriptor values(#stars)7
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)566.515
Computed dipole moment(dipole)4.825
Total solvent accessible surface area (SASA)822.281
Hydrophobic component of SASA (FOSA)241.777
Hydrophilic component of SASA (FISA)372.711
Pie component of the SASA (PISA)207.792
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1545.16
Number of hydrogen bond donors (donorHB)7
Number of hydrogen bond acceptors (accptHB)19.3
Free energy of solvation of dipole (dip^2/V)0.0150647
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0620992
Globularity descriptor (glob)0.786069
Predicted polarizability in cubic angstroms (QPpolrz)49.32
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.339
Predicted octanol/gas partition coefficient (QPlogPoct)38.063
Predicted water/gas partition coefficient (QPlogPw)32.041
Predicted octanol/water partition coefficient (QPlogPo/w)-1.704
Predicted aqueous solubility (QPlogS)-2.974
Conformation-independent predicted aqueous solubility (CIQPlogS)-3.822
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.985
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)2.894
Predicted brain/blood partition coefficient (QPlogBB)-4.241
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.892
Predicted skin permeability, log Kp (QPlogKp)-6.408
PM3 calculated ionization potential (IP(ev))9.35
PM3 calculated electron affinity (EA(eV))0.428
Number of likely metabolic reactions (#metab)10
Prediction of binding to human serum albumin (QPlogKhsa)-1.211
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)232.272
Number of nitrogen and oxygen atoms (#NandO)14
Number of violations of Lipinski’s rule of five (RuleOfFive)3
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43166CA7Carbonic anhydrase VIIT37541SEA
P22748CA4Carbonic anhydrase IVT53378SEA
P27338MAOBMonoamine oxidase BT83011SEA
P11511CYP19A1Cytochrome P450 19A1T13260SwissTargetPrediction and SEA
P20151KLK2Kallikrein 2T01908SEA
P60568IL2Interleukin-2T61698SEA
P14679TYRTyrosinaseT97035SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
P47989XDHXanthine dehydrogenaseT40954SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA
P16152CBR1Carbonyl reductase [NADPH] 1T70518SEA
Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T53378DI0046Bacterial infection[ICD-11: 1A00-1C4Z]P22748CA4
T53378DI0166Glaucoma[ICD-11: 9C61]P22748CA4
T53378DI0372Seborrhoeic dermatitis[ICD-11: EA81]P22748CA4
T83011DI0115Dementia[ICD-11: 6D80-6D8Z]P27338MAOB
T83011DI0117Depression[ICD-11: 6A70-6A7Z]P27338MAOB
T83011DI0190Hypertension[ICD-11: BA00-BA04]P27338MAOB
T83011DI0243Malaria[ICD-11: 1F40-1F45]P27338MAOB
T83011DI0264Migraine[ICD-11: 8A80]P27338MAOB
T83011DI0331Parkinsonism[ICD-11: 8A00]P27338MAOB
T13260DI0062Breast cancer[ICD-11: 2C60-2C6Y]P11511CYP19A1
T13260DI0108Cushing syndrome[ICD-11: 5A70]P11511CYP19A1
T01908DI0213Innate/adaptive immunodeficiency[ICD-11: 4A00]P20151KLK2
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T97035DI0007Acquired hypermelanosis[ICD-11: ED60]P14679TYR
T97035DI0008Acquired hypomelanotic disorder[ICD-11: ED63]P14679TYR
T40954DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]P47989XDH
T40954DI0266Mineral deficiency[ICD-11: 5B5K]P47989XDH
T70518DI0037Asthma[ICD-11: CA23]P16152CBR1
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1

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