Lansioside B



Compound IDCDAMM00900
Common nameLansioside B
IUPAC name3-[2-[2-[5,5,8a-trimethyl-2-methylidene-6-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl]ethyl]-1,3-dimethyl-6-prop-1-en-2-ylcyclohex-3-en-1-yl]propanoic acid
Molecular formulaC36H58O8

Experimental data

Retention time11.34
Adduct[M+H]+
Actual mz619.416
Theoretical mz619.42
Error6.74
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.4969

Identifiers and class information

Inchi keyLESZSAQXPRFCAF-UHFFFAOYNA-N
SmilesO=C(O)CCC1(C)C(C(=C)C)CC=C(C)C1CCC2C(=C)CCC3C(C)(C)C(OC4OC(CO)C(O)C(O)C4O)CCC23C
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)14
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)618.849
Computed dipole moment(dipole)6.417
Total solvent accessible surface area (SASA)876.449
Hydrophobic component of SASA (FOSA)628.96
Hydrophilic component of SASA (FISA)180.685
Pie component of the SASA (PISA)66.804
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1835.29
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)12.2
Free energy of solvation of dipole (dip^2/V)0.0224365
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0311256
Globularity descriptor (glob)0.827133
Predicted polarizability in cubic angstroms (QPpolrz)58.943
Predicted hexadecane/gas partition coefficient (QPlogPC16)17.737
Predicted octanol/gas partition coefficient (QPlogPoct)33.934
Predicted water/gas partition coefficient (QPlogPw)19.764
Predicted octanol/water partition coefficient (QPlogPo/w)4.552
Predicted aqueous solubility (QPlogS)-5.262
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.76
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-2.84
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)48.536
Predicted brain/blood partition coefficient (QPlogBB)-2.041
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)23.91
Predicted skin permeability, log Kp (QPlogKp)-3.27
PM3 calculated ionization potential (IP(ev))9.618
PM3 calculated electron affinity (EA(eV))-0.806
Number of likely metabolic reactions (#metab)12
Prediction of binding to human serum albumin (QPlogKhsa)0.353
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)70.816
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)145.737
Number of nitrogen and oxygen atoms (#NandO)8
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P17706PTPN2T-cell protein-tyrosine phosphataseT49156SEA
P60568IL2Interleukin-2T61698SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T49156DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P17706PTPN2
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2

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