D-Fructose 2,6-bisphosphate



Compound IDCDAMM00775
Common nameD-Fructose 2,6-bisphosphate
IUPAC name[3,4-dihydroxy-2-(hydroxymethyl)-5-(phosphonooxymethyl)oxolan-2-yl] dihydrogen phosphate
Molecular formulaC6H14O12P2

Experimental data

Retention time0.46
Adduct[M+H]+
Actual mz341
Theoretical mz341.003
Error8.43
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.4735

Identifiers and class information

Inchi keyYXWOAJXNVLXPMU-ZXXMMSQZSA-N
SmilesO=P(O)(O)OCC1OC(OP(=O)(O)O)(CO)C(O)C1O
SuperclassOrganic oxygen compounds
ClassOrganooxygen compounds

Pharmacokinetic properties

Number of descriptor values(#stars)6
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)4
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)340.117
Computed dipole moment(dipole)11.133
Total solvent accessible surface area (SASA)523.542
Hydrophobic component of SASA (FOSA)90.099
Hydrophilic component of SASA (FISA)426.067
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)7.376
Total solvent accesible volume (volume)878.214
Number of hydrogen bond donors (donorHB)7
Number of hydrogen bond acceptors (accptHB)15.85
Free energy of solvation of dipole (dip^2/V)0.141141
Index of cohesive interaction in solids (ACxDN^.5/SA)0.080099
Globularity descriptor (glob)0.847124
Predicted polarizability in cubic angstroms (QPpolrz)20.645
Predicted hexadecane/gas partition coefficient (QPlogPC16)10.939
Predicted octanol/gas partition coefficient (QPlogPoct)27.897
Predicted water/gas partition coefficient (QPlogPw)26.876
Predicted octanol/water partition coefficient (QPlogPo/w)-2.098
Predicted aqueous solubility (QPlogS)-0.951
Conformation-independent predicted aqueous solubility (CIQPlogS)-0.568
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)3.224
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)0.015
Predicted brain/blood partition coefficient (QPlogBB)-4.16
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.002
Predicted skin permeability, log Kp (QPlogKp)-8.124
PM3 calculated ionization potential (IP(ev))10.421
PM3 calculated electron affinity (EA(eV))0.047
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-2.088
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)0
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)210.653
Number of nitrogen and oxygen atoms (#NandO)12
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P04818TYMSThymidylate synthase (by homology)T98397SEA
P52209PGD6-phosphogluconate dehydrogenaseT76497SEA
P41231P2RY2Purinergic receptor P2Y2T93515SEA
Q15077P2RY6Pyrimidinergic receptor P2Y6T90782SEA
P16885PLCG2Phospholipase C-gamma-2T93922SEA
Q13822ENPP2AutotaxinT63512SwissTargetPrediction
Q9HBW0LPAR2Lysophosphatidic acid receptor Edg-4T39380SwissTargetPrediction
P11172UMPSUridine 5'-monophosphate synthaseT15851SEA
Q92633LPAR1Lysophosphatidic acid receptor Edg-2T92640SwissTargetPrediction
Q15391P2RY14Purinergic receptor P2Y14T16555SEA
Q14643ITPR1Inositol 1,4,5-trisphosphate receptor type 1T82624SEA
P11717IGF2RInsulin-like growth factor II receptorT59550SwissTargetPrediction and SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T98397DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P04818TYMS
T98397DI0395Stomach cancer[ICD-11: 2B72]P04818TYMS
T76497DI0337Pituitary gland disorder[ICD-11: 5A60-5A61]P52209PGD
T93515DI0436Visual system disease[ICD-11: 9E1Z]P41231P2RY2
T90782DI0025Alzheimer disease[ICD-11: 8A20]Q15077P2RY6
T63512DI0199Idiopathic interstitial pneumonitis[ICD-11: CB03]Q13822ENPP2
T92640DI0146Fibrosis[ICD-11: GA14-GC01]Q92633LPAR1
T92640DI0199Idiopathic interstitial pneumonitis[ICD-11: CB03]Q92633LPAR1
T92640DI0351Psoriasis[ICD-11: EA90]Q92633LPAR1
T92640DI0399Systemic sclerosis[ICD-11: 4A42]Q92633LPAR1
T82624DI0190Hypertension[ICD-11: BA00-BA04]Q14643ITPR1
T59550DI0146Fibrosis[ICD-11: GA14-GC01]P11717IGF2R
T59550DI0368Sarcoidosis[ICD-11: 4B20]P11717IGF2R

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