Avadharidine



Compound IDCDAMM00653
Common nameAvadharidine
IUPAC name(11-ethyl-8,9-dihydroxy-4,6,16,18-tetramethoxy-11-azahexacyclo[7.7.2.12,5.01,10.03,8.013,17]nonadecan-13-yl)methyl 2-[(4-amino-4-oxobutanoyl)amino]benzoate
Molecular formulaC36H51N3O10

Experimental data

Retention time13.79
Adduct[M+H]+
Actual mz686.37
Theoretical mz686.364
Error7.76
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.3131

Identifiers and class information

Inchi keyZBALYAJAWGGUCX-IJUDMYTQNA-N
SmilesO=C(OCC12CN(CC)C3C4(O)C(OC)C1C3(C(OC)CC2)C5CC6C(OC)CC4(O)C5C6OC)C=7C=CC=CC7NC(=O)CCC(=O)N
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)14
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)685.813
Computed dipole moment(dipole)6.596
Total solvent accessible surface area (SASA)918.024
Hydrophobic component of SASA (FOSA)587.015
Hydrophilic component of SASA (FISA)208.846
Pie component of the SASA (PISA)122.163
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1894.5
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)16.3
Free energy of solvation of dipole (dip^2/V)0.0229676
Index of cohesive interaction in solids (ACxDN^.5/SA)0.035511
Globularity descriptor (glob)0.806568
Predicted polarizability in cubic angstroms (QPpolrz)61.841
Predicted hexadecane/gas partition coefficient (QPlogPC16)18.742
Predicted octanol/gas partition coefficient (QPlogPoct)35.866
Predicted water/gas partition coefficient (QPlogPw)25.137
Predicted octanol/water partition coefficient (QPlogPo/w)1.637
Predicted aqueous solubility (QPlogS)-2.57
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.062
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.596
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)15.242
Predicted brain/blood partition coefficient (QPlogBB)-2.022
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)10.523
Predicted skin permeability, log Kp (QPlogKp)-5.657
PM3 calculated ionization potential (IP(ev))8.465
PM3 calculated electron affinity (EA(eV))0.459
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)-0.357
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)31.79
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)28.801
Van der Waals surface area (PSA)173.885
Number of nitrogen and oxygen atoms (#NandO)13
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P36544CHRNA7Neuronal acetylcholine receptor protein alpha-7 subunitT34429SwissTargetPrediction

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T34429DI0101Corneal disease[ICD-11: 9A76-9A78]P36544CHRNA7
T34429DI0370Schizophrenia[ICD-11: 6A20]P36544CHRNA7

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