Villinol



Compound IDCDAMM00514
Common nameVillinol
IUPAC name10-hydroxy-16,17,21-trimethoxy-6-prop-1-en-2-yl-2,7,20-trioxapentacyclo[11.8.0.03,11.04,8.014,19]henicosa-1(13),3(11),4(8),9,14,16,18-heptaen-12-one
Molecular formulaC24H22O8

Experimental data

Retention time9.64
Adduct[M+H]+
Actual mz439.141
Theoretical mz439.138
Error6.43
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.33

Identifiers and class information

Inchi keyGMVHFTVCPPCMGW-UHFFFAOYNA-N
SmilesO=C1C2=C(O)C=C3OC(C(=C)C)CC3=C2OC4=C1C=5C=C(OC)C(OC)=CC5OC4OC
SuperclassPhenylpropanoids and polyketides
ClassIsoflavonoids

Plant source

  • Piper longum L.
  • Pharmacokinetic properties

    Number of descriptor values(#stars)0
    Number of non-conjugated amine groups (#amine)0
    Number of amidine and guanidine groups (#amidine)0
    Number of carboxylic acid groups (#acid)0
    Number of non-conjugated amide groups (#amide)0
    Number of rotatable bonds (#rotor)5
    Number of reactive functional groups (#rtvFG)1
    Predicted central nervous system activity (CNS)0
    Molecular weight (mol_MW)438.433
    Computed dipole moment(dipole)5.788
    Total solvent accessible surface area (SASA)693.137
    Hydrophobic component of SASA (FOSA)458.378
    Hydrophilic component of SASA (FISA)75.429
    Pie component of the SASA (PISA)159.33
    Weakly polar component of the SASA (WPSA)0
    Total solvent accesible volume (volume)1266.54
    Number of hydrogen bond donors (donorHB)0
    Number of hydrogen bond acceptors (accptHB)6.95
    Free energy of solvation of dipole (dip^2/V)0.026453
    Index of cohesive interaction in solids (ACxDN^.5/SA)0
    Globularity descriptor (glob)0.816754
    Predicted polarizability in cubic angstroms (QPpolrz)42.844
    Predicted hexadecane/gas partition coefficient (QPlogPC16)11.647
    Predicted octanol/gas partition coefficient (QPlogPoct)17.86
    Predicted water/gas partition coefficient (QPlogPw)8.727
    Predicted octanol/water partition coefficient (QPlogPo/w)3.838
    Predicted aqueous solubility (QPlogS)-4.899
    Conformation-independent predicted aqueous solubility (CIQPlogS)-6.224
    Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.257
    Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)1908.1
    Predicted brain/blood partition coefficient (QPlogBB)-0.492
    Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)994.598
    Predicted skin permeability, log Kp (QPlogKp)-1.868
    PM3 calculated ionization potential (IP(ev))8.39
    PM3 calculated electron affinity (EA(eV))0.691
    Number of likely metabolic reactions (#metab)6
    Prediction of binding to human serum albumin (QPlogKhsa)0.223
    Predicted qualitative human oral absorption (HumanOralAbsorption)3
    Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
    Solvent-accessible surface area of fluorine atoms (SAFluorine)0
    Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
    Van der Waals surface area (PSA)92.419
    Number of nitrogen and oxygen atoms (#NandO)8
    Number of violations of Lipinski’s rule of five (RuleOfFive)0
    Number of violations of Jorgensen’s rule of three (RuleOfThree)0

    Compound-target network

    Cytoscape Graph

    Protein targets associated with phytocompound

    Uniprot ID Gene name Target name TTD_ID Prediction source
    P56817BACE1Beta-secretase 1T79031SwissTargetPrediction
    P28482MAPK1MAP kinase ERK2T58970SwissTargetPrediction
    P09619PDGFRBPlatelet-derived growth factor receptor betaT59102SwissTargetPrediction
    Q9UNQ0ABCG2ATP-binding cassette sub-family G member 2T56556SwissTargetPrediction

    Target associated diseases

    TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
    T79031DI0025Alzheimer disease[ICD-11: 8A20]P56817BACE1
    T58970DI0036Arteries/arterioles disorder[ICD-11: BD52]P28482MAPK1
    T58970DI0252Melanoma[ICD-11: 2C30]P28482MAPK1
    T58970DI0326Pancreatic cancer[ICD-11: 2C10]P28482MAPK1
    T58970DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P28482MAPK1
    T59102DI0009Acute diabete complication[ICD-11: 5A2Y]P09619PDGFRB
    T59102DI0361Renal cell carcinoma[ICD-11: 2C90]P09619PDGFRB
    T59102DI0403Thrombocytopenia[ICD-11: 3B64]P09619PDGFRB
    T56556DI0218Irritable bowel syndrome[ICD-11: DD91]Q9UNQ0ABCG2
    T56556DI0366Rheumatoid arthritis[ICD-11: FA20]Q9UNQ0ABCG2

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