trans-O-Methylgrandmarin



Compound IDCDAMM00487
Common nametrans-O-Methylgrandmarin
IUPAC name9-hydroxy-5,10-dimethoxy-8,8-dimethyl-9,10-dihydropyrano[2,3-f]chromen-2-one
Molecular formulaC16H18O6

Experimental data

Retention time7.63
Adduct[M+H]+
Actual mz307.114
Theoretical mz307.117
Error11.97
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.6384

Identifiers and class information

Inchi keyNACAFQOYZHTCHZ-UHFFFAOYNA-N
SmilesO=C1OC2=C(C=C1)C(OC)=CC=3OC(C)(C)C(O)C(OC)C32
SuperclassPhenylpropanoids and polyketides
ClassCoumarins and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)3
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)0
Molecular weight (mol_MW)306.315
Computed dipole moment(dipole)5.797
Total solvent accessible surface area (SASA)543.281
Hydrophobic component of SASA (FOSA)324.766
Hydrophilic component of SASA (FISA)96.831
Pie component of the SASA (PISA)121.684
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)951.628
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)7.4
Free energy of solvation of dipole (dip^2/V)0.0353149
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0136209
Globularity descriptor (glob)0.861229
Predicted polarizability in cubic angstroms (QPpolrz)31.166
Predicted hexadecane/gas partition coefficient (QPlogPC16)8.845
Predicted octanol/gas partition coefficient (QPlogPoct)15.766
Predicted water/gas partition coefficient (QPlogPw)10.605
Predicted octanol/water partition coefficient (QPlogPo/w)1.676
Predicted aqueous solubility (QPlogS)-3.109
Conformation-independent predicted aqueous solubility (CIQPlogS)-3.177
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.358
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)1195.79
Predicted brain/blood partition coefficient (QPlogBB)-0.488
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)600.186
Predicted skin permeability, log Kp (QPlogKp)-2.587
PM3 calculated ionization potential (IP(ev))9.056
PM3 calculated electron affinity (EA(eV))0.71
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-0.32
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)91.845
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)80.202
Number of nitrogen and oxygen atoms (#NandO)6
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43166CA7Carbonic anhydrase VIIT37541SEA
Q08499PDE4DPhosphodiesterase 4DT02001SEA
O60706ABCC9Sulfonylurea receptor 2T02777SEA
Q16678CYP1B1Cytochrome P450 1B1T92521SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T02001DI0411Tonus and reflex abnormality[ICD-11: MB47]Q08499PDE4D
T02777DI0009Acute diabete complication[ICD-11: 5A2Y]O60706ABCC9
T02777DI0030Angina pectoris[ICD-11: BA40]O60706ABCC9
T02777DI0417Type 2 diabetes mellitus[ICD-11: 5A11]O60706ABCC9

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