Karaviloside III;(+)-Karavilagenin B 3-alloside



Compound IDCDAMM00431
Common nameKaraviloside III;(+)-Karavilagenin B 3-alloside
IUPAC name2-(hydroxymethyl)-6-[[17-(6-hydroxy-6-methylhept-4-en-2-yl)-7-methoxy-4,4,9,13,14-pentamethyl-2,3,7,8,10,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-3-yl]oxy]oxane-3,4,5-triol
Molecular formulaC37H62O8

Experimental data

Retention time6.65
Adduct[M+H]+
Actual mz635.46
Theoretical mz635.451
Error13.1
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.2149

Identifiers and class information

Inchi keySQGCPGUUCGINMK-CWWNQMEKNA-N
SmilesOCC1OC(OC2CCC3C(=CC(OC)C4C3(C)CCC5(C)C(CCC45C)C(C)CC=CC(O)(C)C)C2(C)C)C(O)C(O)C1O
SuperclassLipids and lipid-like molecules
ClassSteroids and steroid derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)5
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)634.892
Computed dipole moment(dipole)6.063
Total solvent accessible surface area (SASA)992.302
Hydrophobic component of SASA (FOSA)794.033
Hydrophilic component of SASA (FISA)186.189
Pie component of the SASA (PISA)12.08
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1990.95
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)12.65
Free energy of solvation of dipole (dip^2/V)0.0184627
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0285057
Globularity descriptor (glob)0.771308
Predicted polarizability in cubic angstroms (QPpolrz)65.292
Predicted hexadecane/gas partition coefficient (QPlogPC16)19.213
Predicted octanol/gas partition coefficient (QPlogPoct)36.078
Predicted water/gas partition coefficient (QPlogPw)20.371
Predicted octanol/water partition coefficient (QPlogPo/w)4.614
Predicted aqueous solubility (QPlogS)-7.123
Conformation-independent predicted aqueous solubility (CIQPlogS)-6.834
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.29
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)169.929
Predicted brain/blood partition coefficient (QPlogBB)-2.306
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)72.839
Predicted skin permeability, log Kp (QPlogKp)-3.66
PM3 calculated ionization potential (IP(ev))9.367
PM3 calculated electron affinity (EA(eV))-1.157
Number of likely metabolic reactions (#metab)8
Prediction of binding to human serum albumin (QPlogKhsa)0.774
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)80.921
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)123.711
Number of nitrogen and oxygen atoms (#NandO)8
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P60568IL2Interleukin-2T61698SwissTargetPrediction

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2

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