Diosbulbinoside F



Compound IDCDAMM00217
Common nameDiosbulbinoside F
IUPAC namemethyl (2S,4aS,7R,9R,10aS,10bS)-2-(furan-3-yl)-9-hydroxy-10b-methyl-4-oxo-6-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2,4a,5,7,8,9,10,10a-octahydro-1H-benzo[f]isochromene-7-carboxylate
Molecular formulaC26H34O12

Experimental data

Retention time32.15
Adduct[M+Na]+
Actual mz561.194
Theoretical mz561.194
Error0.28
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.335

Identifiers and class information

Inchi keySVXOFPLAAYAGIG-UHFFFAOYNA-N
SmilesCC12CC(OC(=O)C1CC(=C3C2CC(CC3C(=O)OC)O)OC4C(C(C(C(O4)CO)O)O)O)C5=COC=C5
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)9
Number of reactive functional groups (#rtvFG)3
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)538.547
Computed dipole moment(dipole)9.618
Total solvent accessible surface area (SASA)771.108
Hydrophobic component of SASA (FOSA)374.842
Hydrophilic component of SASA (FISA)256.784
Pie component of the SASA (PISA)139.483
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1491.34
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)16.45
Free energy of solvation of dipole (dip^2/V)0.0620313
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0477019
Globularity descriptor (glob)0.818656
Predicted polarizability in cubic angstroms (QPpolrz)49.083
Predicted hexadecane/gas partition coefficient (QPlogPC16)15.94
Predicted octanol/gas partition coefficient (QPlogPoct)33.762
Predicted water/gas partition coefficient (QPlogPw)25.811
Predicted octanol/water partition coefficient (QPlogPo/w)0.016
Predicted aqueous solubility (QPlogS)-3.512
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.052
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.132
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)36.376
Predicted brain/blood partition coefficient (QPlogBB)-2.533
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)13.765
Predicted skin permeability, log Kp (QPlogKp)-4.897
PM3 calculated ionization potential (IP(ev))9.357
PM3 calculated electron affinity (EA(eV))-0.368
Number of likely metabolic reactions (#metab)11
Prediction of binding to human serum albumin (QPlogKhsa)-0.69
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)29.059
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)196.208
Number of nitrogen and oxygen atoms (#NandO)12
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P35372OPRM1Mu opioid receptorT47768SEA
P41145OPRK1Kappa Opioid receptorT60693SEA
P41143OPRD1Delta opioid receptorT58992SEA
P60568IL2Interleukin-2T61698SEA
Q9NZ08ERAP1Endoplasmic reticulum aminopeptidase 1T72849SEA
P30837ALDH1B1Acetaldehyde dehydrogenaseT99641SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T47768DI0013Acute pain[ICD-11: MG31]P35372OPRM1
T47768DI0059Bowel habit change[ICD-11: ME05]P35372OPRM1
T47768DI0087Chronic pain[ICD-11: MG30]P35372OPRM1
T47768DI0101Corneal disease[ICD-11: 9A76-9A78]P35372OPRM1
T47768DI0105Cough[ICD-11: MD12]P35372OPRM1
T47768DI0117Depression[ICD-11: 6A70-6A7Z]P35372OPRM1
T47768DI0124Digestive system disease[ICD-11: DE2Z]P35372OPRM1
T47768DI0218Irritable bowel syndrome[ICD-11: DD91]P35372OPRM1
T47768DI0228Large intestine motility disorder[ICD-11: DB32]P35372OPRM1
T47768DI0317Opioid use disorder[ICD-11: 6C43]P35372OPRM1
T47768DI0324Pain[ICD-11: MG30-MG3Z]P35372OPRM1
T47768DI0349Pruritus[ICD-11: EC90]P35372OPRM1
T47768DI0374Sensation disturbance[ICD-11: MB40]P35372OPRM1
T60693DI0304Non-specific cutaneous vascular symptom[ICD-11: ME64]P41145OPRK1
T60693DI0324Pain[ICD-11: MG30-MG3Z]P41145OPRK1
T60693DI0349Pruritus[ICD-11: EC90]P41145OPRK1
T58992DI0059Bowel habit change[ICD-11: ME05]P41143OPRD1
T58992DI0218Irritable bowel syndrome[ICD-11: DD91]P41143OPRD1
T58992DI0324Pain[ICD-11: MG30-MG3Z]P41143OPRD1
T61698DI0275Multiple sclerosis[ICD-11: 8A40]P60568IL2
T61698DI0361Renal cell carcinoma[ICD-11: 2C90]P60568IL2
T99641DI0396Substance abuse[ICD-11: 6C40]P30837ALDH1B1

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