Linalool oxide D 3-[apiosyl-(1->6)-glucoside]



Compound IDCDAMM00198
Common nameLinalool oxide D 3-[apiosyl-(1->6)-glucoside]
IUPAC name2-[[3,4-dihydroxy-4-(hydroxymethyl)oxolan-2-yl]oxymethyl]-6-(6-ethenyl-2,2,6-trimethyloxan-3-yl)oxyoxane-3,4,5-triol
Molecular formulaC21H36O11

Experimental data

Retention time34.95
Adduct[M+Na]+
Actual mz487.215
Theoretical mz487.215
Error0.34
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.4048

Identifiers and class information

Inchi keyAINNVCELJOODL-UHFFFAOYNA-N
SmilesCC1(C(CCC(O1)(C)C=C)OC2C(C(C(C(O2)COC3C(C(CO3)(CO)O)O)O)O)O)C
SuperclassOrganic oxygen compounds
ClassOrganooxygen compounds

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)13
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)464.509
Computed dipole moment(dipole)8.327
Total solvent accessible surface area (SASA)704.105
Hydrophobic component of SASA (FOSA)435.274
Hydrophilic component of SASA (FISA)246.53
Pie component of the SASA (PISA)22.3
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1360.15
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)16.8
Free energy of solvation of dipole (dip^2/V)0.0509831
Index of cohesive interaction in solids (ACxDN^.5/SA)0.058445
Globularity descriptor (glob)0.843177
Predicted polarizability in cubic angstroms (QPpolrz)40.145
Predicted hexadecane/gas partition coefficient (QPlogPC16)14.059
Predicted octanol/gas partition coefficient (QPlogPoct)31.799
Predicted water/gas partition coefficient (QPlogPw)25.71
Predicted octanol/water partition coefficient (QPlogPo/w)-0.9
Predicted aqueous solubility (QPlogS)-2.08
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.195
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-4.176
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)45.504
Predicted brain/blood partition coefficient (QPlogBB)-2.532
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)17.533
Predicted skin permeability, log Kp (QPlogKp)-4.736
PM3 calculated ionization potential (IP(ev))10.05
PM3 calculated electron affinity (EA(eV))-1.164
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)-1.053
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)25.436
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)162.568
Number of nitrogen and oxygen atoms (#NandO)11
Number of violations of Lipinski’s rule of five (RuleOfFive)2
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P04746AMY2APancreatic alpha-amylaseT86918SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T86918DI0110Cystic fibrosis[ICD-11: CA25]P04746AMY2A
T86918DI0328Pancreatic malfunction[ICD-11: DC30-DC3Z]P04746AMY2A

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