6-amino-5-cyano-2-[[(3-cyano-4,6-dimethyl-2-pyridinyl)thio]methyl]-4-phenyl-4H-pyran-3-carboxylic acid ethyl ester



Compound IDCDAMM00197
Common name6-amino-5-cyano-2-[[(3-cyano-4,6-dimethyl-2-pyridinyl)thio]methyl]-4-phenyl-4H-pyran-3-carboxylic acid ethyl ester
IUPAC nameethyl 6-amino-5-cyano-2-[(3-cyano-4,6-dimethylpyridin-2-yl)sulfanylmethyl]-4-phenyl-4H-pyran-3-carboxylate
Molecular formulaC24H22N4O3S

Experimental data

Retention time21.01
Adduct[M+K]+
Actual mz485.104
Theoretical mz485.104
Error1.25
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score4.7983

Identifiers and class information

Inchi keyRTKWILSYKYJSQX-UHFFFAOYNA-N
SmilesCCOC(=O)C1=C(OC(=C(C1C2=CC=CC=C2)C#N)N)CSC3=C(C(=CC(=N3)C)C)C#N
SuperclassOrganosulfur compounds
ClassThioethers

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)8
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)446.523
Computed dipole moment(dipole)6.787
Total solvent accessible surface area (SASA)761.812
Hydrophobic component of SASA (FOSA)311.027
Hydrophilic component of SASA (FISA)203.889
Pie component of the SASA (PISA)223.532
Weakly polar component of the SASA (WPSA)23.364
Total solvent accesible volume (volume)1389.18
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)7
Free energy of solvation of dipole (dip^2/V)0.03316
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0129947
Globularity descriptor (glob)0.790357
Predicted polarizability in cubic angstroms (QPpolrz)46.439
Predicted hexadecane/gas partition coefficient (QPlogPC16)14.839
Predicted octanol/gas partition coefficient (QPlogPoct)22.827
Predicted water/gas partition coefficient (QPlogPw)12.528
Predicted octanol/water partition coefficient (QPlogPo/w)3.866
Predicted aqueous solubility (QPlogS)-7.284
Conformation-independent predicted aqueous solubility (CIQPlogS)-7.455
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-5.99
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)115.457
Predicted brain/blood partition coefficient (QPlogBB)-2.037
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)64.406
Predicted skin permeability, log Kp (QPlogKp)-3.722
PM3 calculated ionization potential (IP(ev))8.791
PM3 calculated electron affinity (EA(eV))0.966
Number of likely metabolic reactions (#metab)5
Prediction of binding to human serum albumin (QPlogKhsa)0.633
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)86.492
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)120.628
Number of nitrogen and oxygen atoms (#NandO)7
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P53779MAPK10c-Jun N-terminal kinase 3T85421SEA
P43003SLC1A3Excitatory amino acid transporter 1T86582SEA
Q9UIQ6LNPEPCystinyl aminopeptidaseT97537SEA
Q13936CACNA1CVoltage-gated L-type calcium channel alpha-1C subunitT51115SEA
Q01668CACNA1DVoltage-gated L-type calcium channel alpha-1D subunitT24793SEA
P49862KLK7Kallikrein-7T79155SEA
Q9UBS0RPS6KB2Ribosomal protein S6 kinase beta-2T42760SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T85421DI0125Dissociative neurological symptom disorder[ICD-11: 6B60]P53779MAPK10
T51115DI0025Alzheimer disease[ICD-11: 8A20]Q13936CACNA1C
T24793DI0025Alzheimer disease[ICD-11: 8A20]Q01668CACNA1D
T42760DI0062Breast cancer[ICD-11: 2C60-2C6Y]Q9UBS0RPS6KB2

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