2-{1-cyclopentanecarbonyl-3-[(6,7-dimethoxy-3,4-dihydroisoquinolin-1-yl)methyl]piperidin-4-yl}acetic acid



Compound IDCDAMM00187
Common name2-{1-cyclopentanecarbonyl-3-[(6,7-dimethoxy-3,4-dihydroisoquinolin-1-yl)methyl]piperidin-4-yl}acetic acid
IUPAC name2-[1-(cyclopentanecarbonyl)-3-[(6,7-dimethoxy-3,4-dihydroisoquinolin-1-yl)methyl]piperidin-4-yl]acetic acid
Molecular formulaC25H34N2O5

Experimental data

Retention time37.23
Adduct[M+NH4]+
Actual mz460.281
Theoretical mz460.281
Error0.67
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.3945

Identifiers and class information

Inchi keyPJNDMLSKABACTH-UHFFFAOYSA-N
SmilesCOC1=C(C=C2C(=C1)CCN=C2CC3CN(CCC3CC(=O)O)C(=O)C4CCCC4)OC
SuperclassOrganoheterocyclic compounds
ClassDihydroisoquinolines

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)7
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)442.554
Computed dipole moment(dipole)5.311
Total solvent accessible surface area (SASA)766.462
Hydrophobic component of SASA (FOSA)589.805
Hydrophilic component of SASA (FISA)122.833
Pie component of the SASA (PISA)53.825
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1416.71
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)7.5
Free energy of solvation of dipole (dip^2/V)0.019907
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0138384
Globularity descriptor (glob)0.795907
Predicted polarizability in cubic angstroms (QPpolrz)46.562
Predicted hexadecane/gas partition coefficient (QPlogPC16)13.136
Predicted octanol/gas partition coefficient (QPlogPoct)22.234
Predicted water/gas partition coefficient (QPlogPw)12.936
Predicted octanol/water partition coefficient (QPlogPo/w)4.002
Predicted aqueous solubility (QPlogS)-5.63
Conformation-independent predicted aqueous solubility (CIQPlogS)-5.009
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-1.909
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)121.423
Predicted brain/blood partition coefficient (QPlogBB)-1.151
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)93.662
Predicted skin permeability, log Kp (QPlogKp)-2.922
PM3 calculated ionization potential (IP(ev))8.392
PM3 calculated electron affinity (EA(eV))0.291
Number of likely metabolic reactions (#metab)7
Prediction of binding to human serum albumin (QPlogKhsa)0.175
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)87.685
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)18.892
Van der Waals surface area (PSA)101.923
Number of nitrogen and oxygen atoms (#NandO)7
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P22303ACHEAcetylcholinesteraseT30082SEA
Q03181PPARDPeroxisome proliferator-activated receptor deltaT36557SEA
Q07343PDE4BPhosphodiesterase 4B (by homology)T10265SEA
O75884RBBP9Putative hydrolase RBBP9T12084SEA
Q9NXA8SIRT5NAD-dependent deacetylase sirtuin-5T91940SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T30082DI0025Alzheimer disease[ICD-11: 8A20]P22303ACHE
T30082DI0166Glaucoma[ICD-11: 9C61]P22303ACHE
T30082DI0282Myasthenia gravis[ICD-11: 8C6Y]P22303ACHE
T30082DI0313Oesophageal/gastroduodenal disorder[ICD-11: DD90]P22303ACHE
T30082DI0332Pediculosis[ICD-11: 1G00]P22303ACHE
T30082DI0421Unspecific substance harmful effect[ICD-11: NE6Z]P22303ACHE
T36557DI0302Non-alcoholic fatty liver disease[ICD-11: DB92]Q03181PPARD
T36557DI0308Obesity[ICD-11: 5B80-5B81]Q03181PPARD
T10265DI0037Asthma[ICD-11: CA23]Q07343PDE4B
T10265DI0199Idiopathic interstitial pneumonitis[ICD-11: CB03]Q07343PDE4B
T10265DI0265Mild neurocognitive disorder[ICD-11: 6D71]Q07343PDE4B

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