N-(7-{1-[(2-cyanoethyl)(methyl)carbamoyl]ethyl}-8-hydroxy-1,4a-dimethyl-decahydronaphthalen-2-yl)pyrimidine-5-carboxamide



Compound IDCDAMM00182
Common nameN-(7-{1-[(2-cyanoethyl)(methyl)carbamoyl]ethyl}-8-hydroxy-1,4a-dimethyl-decahydronaphthalen-2-yl)pyrimidine-5-carboxamide
IUPAC nameN-[7-[1-[2-cyanoethyl(methyl)amino]-1-oxopropan-2-yl]-8-hydroxy-1,4a-dimethyl-2,3,4,5,6,7,8,8a-octahydro-1H-naphthalen-2-yl]pyrimidine-5-carboxamide
Molecular formulaC24H35N5O3

Experimental data

Retention time46.26
Adduct[M+H]+
Actual mz442.282
Theoretical mz442.281
Error0.9
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.9456

Identifiers and class information

Inchi keyLASZHOMWXMJRPL-UHFFFAOYSA-N
SmilesCC1C(CCC2(C1C(C(CC2)C(C)C(=O)N(C)CCC#N)O)C)NC(=O)C3=CN=CN=C3
SuperclassLipids and lipid-like molecules
ClassPrenol lipids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)8
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)441.572
Computed dipole moment(dipole)7.607
Total solvent accessible surface area (SASA)719.792
Hydrophobic component of SASA (FOSA)418.336
Hydrophilic component of SASA (FISA)179.507
Pie component of the SASA (PISA)121.95
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1393.56
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)11.7
Free energy of solvation of dipole (dip^2/V)0.0415209
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0229876
Globularity descriptor (glob)0.838253
Predicted polarizability in cubic angstroms (QPpolrz)45.644
Predicted hexadecane/gas partition coefficient (QPlogPC16)13.68
Predicted octanol/gas partition coefficient (QPlogPoct)25.016
Predicted water/gas partition coefficient (QPlogPw)17.905
Predicted octanol/water partition coefficient (QPlogPo/w)1.384
Predicted aqueous solubility (QPlogS)-4.157
Conformation-independent predicted aqueous solubility (CIQPlogS)-4.201
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.356
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)128.614
Predicted brain/blood partition coefficient (QPlogBB)-1.622
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)85.282
Predicted skin permeability, log Kp (QPlogKp)-3.63
PM3 calculated ionization potential (IP(ev))9.595
PM3 calculated electron affinity (EA(eV))1.045
Number of likely metabolic reactions (#metab)6
Prediction of binding to human serum albumin (QPlogKhsa)-0.5
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)72.799
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)23.16
Van der Waals surface area (PSA)127.191
Number of nitrogen and oxygen atoms (#NandO)8
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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