2-({3-[(ethylcarbamothioyl)amino]-1,4,5-trihydroxycyclohexyl}formamido)propanamide



Compound IDCDAMM00146
Common name2-({3-[(ethylcarbamothioyl)amino]-1,4,5-trihydroxycyclohexyl}formamido)propanamide
IUPAC nameN-(1-amino-1-oxopropan-2-yl)-3-(ethylcarbamothioylamino)-1,4,5-trihydroxycyclohexane-1-carboxamide
Molecular formulaC13H24N4O5S

Experimental data

Retention time11.88
Adduct[M+H]+
Actual mz349.154
Theoretical mz349.154
Error1.17
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.0029

Identifiers and class information

Inchi keyYYOVMRVMKDRZNM-UHFFFAOYSA-N
SmilesCCNC(=S)NC1CC(CC(C1O)O)(C(=O)NC(C)C(=O)N)O
SuperclassOrganic acids and derivatives
ClassPeptidomimetics

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)2
Number of rotatable bonds (#rotor)8
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)348.416
Computed dipole moment(dipole)5.58
Total solvent accessible surface area (SASA)543.586
Hydrophobic component of SASA (FOSA)277.811
Hydrophilic component of SASA (FISA)219.92
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)45.855
Total solvent accesible volume (volume)1016.03
Number of hydrogen bond donors (donorHB)7.25
Number of hydrogen bond acceptors (accptHB)10.9
Free energy of solvation of dipole (dip^2/V)0.0306492
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0539917
Globularity descriptor (glob)0.899152
Predicted polarizability in cubic angstroms (QPpolrz)29.371
Predicted hexadecane/gas partition coefficient (QPlogPC16)11.367
Predicted octanol/gas partition coefficient (QPlogPoct)26.662
Predicted water/gas partition coefficient (QPlogPw)25.914
Predicted octanol/water partition coefficient (QPlogPo/w)-1.762
Predicted aqueous solubility (QPlogS)-0.501
Conformation-independent predicted aqueous solubility (CIQPlogS)-0.679
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-0.415
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)31.864
Predicted brain/blood partition coefficient (QPlogBB)-1.62
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)58.589
Predicted skin permeability, log Kp (QPlogKp)-4.805
PM3 calculated ionization potential (IP(ev))8.488
PM3 calculated electron affinity (EA(eV))0.224
Number of likely metabolic reactions (#metab)5
Prediction of binding to human serum albumin (QPlogKhsa)-1.329
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)30.575
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)51.143
Van der Waals surface area (PSA)173.482
Number of nitrogen and oxygen atoms (#NandO)9
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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