2-({3-[(carboxymethyl)amino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene}amino)-3-methylbutanoic acid



Compound IDCDAMM00142
Common name2-({3-[(carboxymethyl)amino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene}amino)-3-methylbutanoic acid
IUPAC name2-[[3-(carboxymethylimino)-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohexen-1-yl]amino]-3-methylbutanoic acid
Molecular formulaC15H24N2O7

Experimental data

Retention time47.75
Adduct[M+H]+
Actual mz345.166
Theoretical mz345.166
Error1.1
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.5563

Identifiers and class information

Inchi keyUHMGBNQDCNYVOQ-UHFFFAOYSA-N
SmilesCC(C)C(C(=O)O)NC1=C(C(=NCC(=O)O)CC(C1)(CO)O)OC
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)2
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)11
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)344.364
Computed dipole moment(dipole)5.917
Total solvent accessible surface area (SASA)602.952
Hydrophobic component of SASA (FOSA)320.96
Hydrophilic component of SASA (FISA)266.064
Pie component of the SASA (PISA)15.928
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1077.13
Number of hydrogen bond donors (donorHB)6
Number of hydrogen bond acceptors (accptHB)9.2
Free energy of solvation of dipole (dip^2/V)0.0325091
Index of cohesive interaction in solids (ACxDN^.5/SA)0.037375
Globularity descriptor (glob)0.842808
Predicted polarizability in cubic angstroms (QPpolrz)30.042
Predicted hexadecane/gas partition coefficient (QPlogPC16)11.575
Predicted octanol/gas partition coefficient (QPlogPoct)23.951
Predicted water/gas partition coefficient (QPlogPw)18.511
Predicted octanol/water partition coefficient (QPlogPo/w)0.909
Predicted aqueous solubility (QPlogS)-2.362
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.718
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-0.536
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)1.906
Predicted brain/blood partition coefficient (QPlogBB)-2.597
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.919
Predicted skin permeability, log Kp (QPlogKp)-5.311
PM3 calculated ionization potential (IP(ev))8.241
PM3 calculated electron affinity (EA(eV))0.043
Number of likely metabolic reactions (#metab)10
Prediction of binding to human serum albumin (QPlogKhsa)-0.993
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)24.321
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)163.139
Number of nitrogen and oxygen atoms (#NandO)9
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)2

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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