4-amino-2-hydroxy-4-[(1-hydroxy-1-{2-oxobicyclo[4.1.0]hept-3-en-1-yl}propan-2-yl)carbamoyl]butanoic acid



Compound IDCDAMM00129
Common name4-amino-2-hydroxy-4-[(1-hydroxy-1-{2-oxobicyclo[4.1.0]hept-3-en-1-yl}propan-2-yl)carbamoyl]butanoic acid
IUPAC name4-amino-2-hydroxy-5-[[1-hydroxy-1-(2-oxo-1-bicyclo[4.1.0]hept-3-enyl)propan-2-yl]amino]-5-oxopentanoic acid
Molecular formulaC15H22N2O6

Experimental data

Retention time41
Adduct[M+H]+
Actual mz327.155
Theoretical mz327.155
Error1.34
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.186

Identifiers and class information

Inchi keySYGQXRLXOOXDRP-UHFFFAOYSA-N
SmilesCC(C(C12CC1CC=CC2=O)O)NC(=O)C(CC(C(=O)O)O)N
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)10
Number of reactive functional groups (#rtvFG)1
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)326.349
Computed dipole moment(dipole)5.62
Total solvent accessible surface area (SASA)565.435
Hydrophobic component of SASA (FOSA)234.394
Hydrophilic component of SASA (FISA)256.87
Pie component of the SASA (PISA)74.171
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)1015.34
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)9.9
Free energy of solvation of dipole (dip^2/V)0.0311038
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0391505
Globularity descriptor (glob)0.864022
Predicted polarizability in cubic angstroms (QPpolrz)28.767
Predicted hexadecane/gas partition coefficient (QPlogPC16)11.166
Predicted octanol/gas partition coefficient (QPlogPoct)22.545
Predicted water/gas partition coefficient (QPlogPw)19.43
Predicted octanol/water partition coefficient (QPlogPo/w)-2.867
Predicted aqueous solubility (QPlogS)-0.921
Conformation-independent predicted aqueous solubility (CIQPlogS)-0.337
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-1.63
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)1.691
Predicted brain/blood partition coefficient (QPlogBB)-1.935
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)0.977
Predicted skin permeability, log Kp (QPlogKp)-7.095
PM3 calculated ionization potential (IP(ev))9.53
PM3 calculated electron affinity (EA(eV))0.418
Number of likely metabolic reactions (#metab)6
Prediction of binding to human serum albumin (QPlogKhsa)-1.216
Predicted qualitative human oral absorption (HumanOralAbsorption)1
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)1.286
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)16.617
Van der Waals surface area (PSA)168.716
Number of nitrogen and oxygen atoms (#NandO)8
Number of violations of Lipinski’s rule of five (RuleOfFive)1
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
Q9H4A4RNPEPAminopeptidase BT57818SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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