Hippeastrine



Compound IDCDAMM00127
Common nameHippeastrine
IUPAC name(2S,3S,9S,10S)-9-hydroxy-4-methyl-11,16,18-trioxa-4-azapentacyclo[11.7.0.02,10.03,7.015,19]icosa-1(20),7,13,15(19)-tetraen-12-one
Molecular formulaC17H17NO5

Experimental data

Retention time40.72
Adduct[M+H]+
Actual mz316.119
Theoretical mz316.118
Error2.08
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.6676

Identifiers and class information

Inchi keyDGQPIOQRPAGNGB-DWRMVLAINA-N
SmilesCN1CCC2=CC(C3C(C21)C4=CC5=C(C=C4C(=O)O3)OCO5)O
SuperclassAlkaloids and derivatives
ClassAmaryllidaceae alkaloids

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)1
Number of reactive functional groups (#rtvFG)2
Predicted central nervous system activity (CNS)1
Molecular weight (mol_MW)315.325
Computed dipole moment(dipole)5.648
Total solvent accessible surface area (SASA)480.065
Hydrophobic component of SASA (FOSA)272.845
Hydrophilic component of SASA (FISA)102.478
Pie component of the SASA (PISA)104.742
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)883.367
Number of hydrogen bond donors (donorHB)1
Number of hydrogen bond acceptors (accptHB)8.2
Free energy of solvation of dipole (dip^2/V)0.0361158
Index of cohesive interaction in solids (ACxDN^.5/SA)0.017081
Globularity descriptor (glob)0.927454
Predicted polarizability in cubic angstroms (QPpolrz)29.557
Predicted hexadecane/gas partition coefficient (QPlogPC16)8.489
Predicted octanol/gas partition coefficient (QPlogPoct)15.88
Predicted water/gas partition coefficient (QPlogPw)11.605
Predicted octanol/water partition coefficient (QPlogPo/w)0.409
Predicted aqueous solubility (QPlogS)-0.944
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.095
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.932
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)263.631
Predicted brain/blood partition coefficient (QPlogBB)0.107
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)129.538
Predicted skin permeability, log Kp (QPlogKp)-5.006
PM3 calculated ionization potential (IP(ev))9.275
PM3 calculated electron affinity (EA(eV))0.636
Number of likely metabolic reactions (#metab)5
Prediction of binding to human serum albumin (QPlogKhsa)-0.497
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)72.672
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)85.123
Number of nitrogen and oxygen atoms (#NandO)6
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P43354NR4A2Orphan nuclear receptor NURR1T67163SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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