1,3-dicyclohexylurea



Compound IDCDAMM00079
Common name1,3-dicyclohexylurea
IUPAC name1,3-dicyclohexylurea
Molecular formulaC13H24N2O

Experimental data

Retention time58.54
Adduct[M+H]+
Actual mz225.196
Theoretical mz225.196
Error1.46
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.4446

Identifiers and class information

Inchi keyADFXKUOMJKEIND-UHFFFAOYSA-N
SmilesC1CCC(CC1)NC(=O)NC2CCCCC2
SuperclassOrganic acids and derivatives
ClassOrganic carbonic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)0
Number of non-conjugated amide groups (#amide)1
Number of rotatable bonds (#rotor)2
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)0
Molecular weight (mol_MW)224.345
Computed dipole moment(dipole)6.055
Total solvent accessible surface area (SASA)547.089
Hydrophobic component of SASA (FOSA)482.686
Hydrophilic component of SASA (FISA)64.402
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)893.426
Number of hydrogen bond donors (donorHB)2
Number of hydrogen bond acceptors (accptHB)2
Free energy of solvation of dipole (dip^2/V)0.0410424
Index of cohesive interaction in solids (ACxDN^.5/SA)0.00517
Globularity descriptor (glob)0.819999
Predicted polarizability in cubic angstroms (QPpolrz)28.317
Predicted hexadecane/gas partition coefficient (QPlogPC16)7.255
Predicted octanol/gas partition coefficient (QPlogPoct)12.917
Predicted water/gas partition coefficient (QPlogPw)8.165
Predicted octanol/water partition coefficient (QPlogPo/w)2.708
Predicted aqueous solubility (QPlogS)-3.905
Conformation-independent predicted aqueous solubility (CIQPlogS)-2.108
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-3.07
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)1396.3
Predicted brain/blood partition coefficient (QPlogBB)-0.196
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)1290.26
Predicted skin permeability, log Kp (QPlogKp)-2.514
PM3 calculated ionization potential (IP(ev))9.381
PM3 calculated electron affinity (EA(eV))-1.028
Number of likely metabolic reactions (#metab)0
Prediction of binding to human serum albumin (QPlogKhsa)0.125
Predicted qualitative human oral absorption (HumanOralAbsorption)3
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)100
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)30.175
Van der Waals surface area (PSA)49.694
Number of nitrogen and oxygen atoms (#NandO)3
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P07327ADH1AAlcohol dehydrogenase alpha chainT65570SEA
P21554CNR1Cannabinoid receptor 1 (by homology)T76685SEA
P34913EPHX2Epoxide hydrataseT35734SEA
P56524HDAC4Histone deacetylase 4T63816SEA
P08842STSSteryl-sulfataseT33489SEA
Q9BPW0PPP5CSerine/threonine-protein phosphataseT04123SEA
Q9GZQ4NMUR2Neuromedin-U receptor 2T04210SEA
P22888LHCGRLuteinizing hormone/Choriogonadotropin receptorT79473SEA
Q9UJM8HAO1Hydroxyacid oxidase 1T63170SEA
O95749GGPS1GeranyltranstransferaseT86528SEA
Q9HB89NMUR1Neuromedin-U receptor 1T83382SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T65570DI0139Exposure to noxious substances harmful effect[ICD-11: NE61]P07327ADH1A
T76685DI0031Anorexia nervosa[ICD-11: 6B80]P21554CNR1
T76685DI0214Insomnia[ICD-11: 7A00-7A0Z]P21554CNR1
T76685DI0308Obesity[ICD-11: 5B80-5B81]P21554CNR1
T35734DI0086Chronic obstructive pulmonary disease[ICD-11: CA22]P34913EPHX2
T35734DI0190Hypertension[ICD-11: BA00-BA04]P34913EPHX2
T63816DI0391Solid tumour/cancer[ICD-11: 2A00-2F9Z]P56524HDAC4
T33489DI0022Allergic/hypersensitivity disorder[ICD-11: 4A80-4A8Z]P08842STS
T79473DI0144Female infertility[ICD-11: GA31]P22888LHCGR
T79473DI0337Pituitary gland disorder[ICD-11: 5A60-5A61]P22888LHCGR
T63170DI0201Inborn carbohydrate metabolism error[ICD-11: 5C51]Q9UJM8HAO1
T86528DI0057Bone paget disease[ICD-11: FB85]O95749GGPS1
T86528DI0237Low bone mass disorder[ICD-11: FB83]O95749GGPS1
T86528DI0267Mineral excesses[ICD-11: 5B91]O95749GGPS1
T86528DI0281Musculoskeletal disorder[ICD-11: FA00-FC0Z]O95749GGPS1

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