L-1,2,3,4-Tetrahydro-beta-carboline-3-carboxylic acid



Compound IDCDAMM00068
Common nameL-1,2,3,4-Tetrahydro-beta-carboline-3-carboxylic acid
IUPAC name2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxylic acid
Molecular formulaC12H12N2O2

Experimental data

Retention time31.35
Adduct[M+H]+
Actual mz217.096
Theoretical mz217.097
Error3.45
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score5.87

Identifiers and class information

Inchi keyFSNCEEGOMTYXKY-UHFFFAOYNA-N
SmilesC1C(NCC2=C1C3=CC=CC=C3N2)C(=O)O
SuperclassOrganoheterocyclic compounds
ClassIndoles and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)0
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)1
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-1
Molecular weight (mol_MW)216.239
Computed dipole moment(dipole)8.45
Total solvent accessible surface area (SASA)427.592
Hydrophobic component of SASA (FOSA)102.619
Hydrophilic component of SASA (FISA)141.501
Pie component of the SASA (PISA)183.473
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)708.782
Number of hydrogen bond donors (donorHB)3
Number of hydrogen bond acceptors (accptHB)3.5
Free energy of solvation of dipole (dip^2/V)0.100742
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0141775
Globularity descriptor (glob)0.899105
Predicted polarizability in cubic angstroms (QPpolrz)23.322
Predicted hexadecane/gas partition coefficient (QPlogPC16)7.871
Predicted octanol/gas partition coefficient (QPlogPoct)15.159
Predicted water/gas partition coefficient (QPlogPw)10.579
Predicted octanol/water partition coefficient (QPlogPo/w)-0.706
Predicted aqueous solubility (QPlogS)-1.982
Conformation-independent predicted aqueous solubility (CIQPlogS)-1.648
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-2.958
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)28.481
Predicted brain/blood partition coefficient (QPlogBB)-0.265
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)14.867
Predicted skin permeability, log Kp (QPlogKp)-5.448
PM3 calculated ionization potential (IP(ev))8.311
PM3 calculated electron affinity (EA(eV))0.105
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-0.404
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)48.846
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)77.098
Number of nitrogen and oxygen atoms (#NandO)4
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)0

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names

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