L-Histidine



Compound IDCDAMM00034
Common nameL-Histidine
IUPAC name(2S)-2-amino-3-(1H-imidazol-5-yl)propanoic acid
Molecular formulaC6H9N3O2

Experimental data

Retention time5.76
Adduct[M+H]+
Actual mz156.077
Theoretical mz156.077
Error2.88
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score6.5358

Identifiers and class information

Inchi keyHNDVDQJCIGZPNO-YFKPBYRVSA-N
SmilesC1=C(NC=N1)CC(C(=O)O)N
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)1
Number of non-conjugated amine groups (#amine)1
Number of amidine and guanidine groups (#amidine)0
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)4
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-1
Molecular weight (mol_MW)155.156
Computed dipole moment(dipole)6.514
Total solvent accessible surface area (SASA)347.834
Hydrophobic component of SASA (FOSA)55.198
Hydrophilic component of SASA (FISA)197.447
Pie component of the SASA (PISA)95.19
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)540.37
Number of hydrogen bond donors (donorHB)4
Number of hydrogen bond acceptors (accptHB)5
Free energy of solvation of dipole (dip^2/V)0.0785255
Index of cohesive interaction in solids (ACxDN^.5/SA)0.0287493
Globularity descriptor (glob)0.922403
Predicted polarizability in cubic angstroms (QPpolrz)13.812
Predicted hexadecane/gas partition coefficient (QPlogPC16)6.312
Predicted octanol/gas partition coefficient (QPlogPoct)13.855
Predicted water/gas partition coefficient (QPlogPw)12.448
Predicted octanol/water partition coefficient (QPlogPo/w)-2.679
Predicted aqueous solubility (QPlogS)-0.252
Conformation-independent predicted aqueous solubility (CIQPlogS)-0.058
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-2.16
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)8.395
Predicted brain/blood partition coefficient (QPlogBB)-0.826
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)3.97
Predicted skin permeability, log Kp (QPlogKp)-6.502
PM3 calculated ionization potential (IP(ev))9.407
PM3 calculated electron affinity (EA(eV))-0.873
Number of likely metabolic reactions (#metab)4
Prediction of binding to human serum albumin (QPlogKhsa)-0.974
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)27.796
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)102
Number of nitrogen and oxygen atoms (#NandO)5
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P24046GABRR1GABA receptor rho-1 subunitT99665SEA
O00222GRM8Metabotropic glutamate receptor 8T77548SEA
Q4U2R8SLC22A6Solute carrier family 22 member 6 (by homology)T70680SEA
P43005SLC1A1Excitatory amino acid transporter 3T31721SEA
P39086GRIK1Glutamate receptor ionotropic kainate 1T73495SEA
Q13002GRIK2Glutamate receptor ionotropic kainate 2T58178SEA
O15303GRM6Metabotropic glutamate receptor 6T55956SEA
P42261GRIA1Glutamate receptor ionotropic, AMPA 1T33584SEA
Q16478GRIK5Glutamate receptor ionotropic kainate 5T87930SEA
Q13003GRIK3Glutamate receptor ionotropic kainate 3T68876SEA
P42262GRIA2Glutamate receptor ionotropic, AMPA 2T42392SEA
Q96IY4CPB2Carboxypeptidase B2 isoform AT98022SEA
P07101THTyrosine 3-hydroxylaseT62390SEA
Q16719KYNUKynureninaseT99912SEA
Q9H3N8HRH4Histamine H4 receptorT26500SEA
Q01650SLC7A5L-type amino acid transporter 1 (by homology)T48330SEA
P15086CPB1Carboxypeptidase BT36725SEA
Q9BYF1ACE2Angiotensin-converting enzyme 2T27889SEA
P05089ARG1Arginase-1 (by homology)T63224SEA
P12004PCNAProliferating cell nuclear antigenT21782SEA
Q04756HGFACHepatocyte growth factor activatorT38584SEA
P19801AOC1Diamine oxidaseT77546SEA
Q8IWU9TPH2Tryptophan hydroxylaseT51593SEA
Q9UPY5SLC7A11Cystine/glutamate transporterT11615SEA
P28476GABRR2GABA(A) receptor rho2T90682SEA
P42263GRIA3Glutamate receptor AMPA 3T62391SEA
Q6ZQN7SLCO4C1Organic anion transporter M1T36053SEA
Q16651PRSS8Channel-activating protease 1T67339SEA
O95665NTSR2Neurotensin receptor type 2T95605SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T70680DI0167Gout[ICD-11: FA25]Q4U2R8SLC22A6
T70680DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]Q4U2R8SLC22A6
T70680DI0310Ocular disease[ICD-11: N.A.]Q4U2R8SLC22A6
T73495DI0134Epilepsy/seizure[ICD-11: 8A61-8A6Z]P39086GRIK1
T73495DI0396Substance abuse[ICD-11: 6C40]P39086GRIK1
T33584DI0298Neuropathy[ICD-11: 8C0Z]P42261GRIA1
T42392DI0298Neuropathy[ICD-11: 8C0Z]P42262GRIA2
T98022DI0073Cerebral ischaemia[ICD-11: 8B1Z]Q96IY4CPB2
T98022DI0074Cerebral ischaemic stroke[ICD-11: 8B11]Q96IY4CPB2
T98022DI0405Thrombosis[ICD-11: DB61-GB90]Q96IY4CPB2
T62390DI0019Adrenomedullary hyperfunction[ICD-11: 5A75]P07101TH
T62390DI0306Nutritional deficiency[ICD-11: 5B50-5B71]P07101TH
T99912DI0046Bacterial infection[ICD-11: 1A00-1C4Z]Q16719KYNU
T99912DI0062Breast cancer[ICD-11: 2C60-2C6Y]Q16719KYNU
T26500DI0037Asthma[ICD-11: CA23]Q9H3N8HRH4
T26500DI0039Atopic eczema[ICD-11: EA80]Q9H3N8HRH4
T26500DI0351Psoriasis[ICD-11: EA90]Q9H3N8HRH4
T26500DI0366Rheumatoid arthritis[ICD-11: FA20]Q9H3N8HRH4
T26500DI0432Vasomotor/allergic rhinitis[ICD-11: CA08]Q9H3N8HRH4
T27889DI0009Acute diabete complication[ICD-11: 5A2Y]Q9BYF1ACE2
T27889DI0217Intrathoracic organs injury[ICD-11: NB32]Q9BYF1ACE2
T27889DI0356Pulmonary hypertension[ICD-11: BB01]Q9BYF1ACE2
T63224DI0258Metabolism inborn error[ICD-11: 5C50]P05089ARG1
T21782DI0308Obesity[ICD-11: 5B80-5B81]P12004PCNA
T51593DI0066Carcinoid syndrome[ICD-11: 5B10]Q8IWU9TPH2
T51593DI0389Small intestine developmental anomaly[ICD-11: DA90]Q8IWU9TPH2
T11615DI0054Body-focused behaviour disorder[ICD-11: 6B25]Q9UPY5SLC7A11
T62391DI0298Neuropathy[ICD-11: 8C0Z]P42263GRIA3
T36053DI0068Cardiac arrhythmia[ICD-11: BC9Z]Q6ZQN7SLCO4C1
T36053DI0175Heart failure[ICD-11: BD10-BD1Z]Q6ZQN7SLCO4C1

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