4-Guanidinobutanoic acid



Compound IDCDAMM00026
Common name4-Guanidinobutanoic acid
IUPAC name4-(diaminomethylideneamino)butanoic acid
Molecular formulaC5H11N3O2

Experimental data

Retention time7.13
Adduct[M+H]+
Actual mz146.092
Theoretical mz146.092
Error2.73
Ionizaton modePositive
Instrument typeLC-MS/MS-QTOF, spectrum predicted by MS-DIAL v4.9 integrated with MS-FINDER 3.60
Score7.9971

Identifiers and class information

Inchi keyTUHVEAJXIMEOSA-UHFFFAOYSA-N
SmilesC(CC(=O)O)CN=C(N)N
SuperclassOrganic acids and derivatives
ClassCarboxylic acids and derivatives

Pharmacokinetic properties

Number of descriptor values(#stars)2
Number of non-conjugated amine groups (#amine)0
Number of amidine and guanidine groups (#amidine)1
Number of carboxylic acid groups (#acid)1
Number of non-conjugated amide groups (#amide)0
Number of rotatable bonds (#rotor)5
Number of reactive functional groups (#rtvFG)0
Predicted central nervous system activity (CNS)-2
Molecular weight (mol_MW)145.161
Computed dipole moment(dipole)9.36
Total solvent accessible surface area (SASA)368.516
Hydrophobic component of SASA (FOSA)120.811
Hydrophilic component of SASA (FISA)247.705
Pie component of the SASA (PISA)0
Weakly polar component of the SASA (WPSA)0
Total solvent accesible volume (volume)551.423
Number of hydrogen bond donors (donorHB)5
Number of hydrogen bond acceptors (accptHB)4
Free energy of solvation of dipole (dip^2/V)0.158881
Index of cohesive interaction in solids (ACxDN^.5/SA)0.024271
Globularity descriptor (glob)0.882467
Predicted polarizability in cubic angstroms (QPpolrz)12.703
Predicted hexadecane/gas partition coefficient (QPlogPC16)5.946
Predicted octanol/gas partition coefficient (QPlogPoct)15.466
Predicted water/gas partition coefficient (QPlogPw)12.451
Predicted octanol/water partition coefficient (QPlogPo/w)-0.677
Predicted aqueous solubility (QPlogS)-0.71
Conformation-independent predicted aqueous solubility (CIQPlogS)-0.782
Predicted IC50 value for blockage of HERG K+ channels (QPlogHERG)-1.626
Predicted apparent Caco-2 cell permeability in nm/sec (QPPCaco)11.233
Predicted brain/blood partition coefficient (QPlogBB)-1.858
Predicted apparent MDCK cell permeability in nm/sec (QPPMDCK)4.916
Predicted skin permeability, log Kp (QPlogKp)-7.667
PM3 calculated ionization potential (IP(ev))8.363
PM3 calculated electron affinity (EA(eV))-1.056
Number of likely metabolic reactions (#metab)3
Prediction of binding to human serum albumin (QPlogKhsa)-1.096
Predicted qualitative human oral absorption (HumanOralAbsorption)2
Predicted human oral absorption on 0 to 100% scale (PercentHumanOralAbsorption)41.784
Solvent-accessible surface area of fluorine atoms (SAFluorine)0
Solvent-accessible surface area of amide oxygen atoms (SAamideO)0
Van der Waals surface area (PSA)120.634
Number of nitrogen and oxygen atoms (#NandO)5
Number of violations of Lipinski’s rule of five (RuleOfFive)0
Number of violations of Jorgensen’s rule of three (RuleOfThree)1

Compound-target network

Cytoscape Graph

Protein targets associated with phytocompound

Uniprot ID Gene name Target name TTD_ID Prediction source
P24046GABRR1GABA receptor rho-1 subunitT99665SEA
O75899GABBR2GABA-B receptorT42446SEA
P48066SLC6A11GABA transporter 3T38200SEA
O75899GABBR2GABA-B receptorT42446SEA
Q4U2R8SLC22A6Solute carrier family 22 member 6 (by homology)T70680SEA
P08514ITGA2BIntegrin alpha-IIb/beta-3T50688SEA
Q6B0I6KDM4DLysine-specific demethylase 4DT17036SEA
Q07075ENPEPAminopeptidase AT31956SEA
P41229KDM5CLysine-specific demethylase 5CT85540SEA
Q9Y2K7KDM2ALysine-specific demethylase 2AT71949SEA
Q9UPP1PHF8Histone lysine demethylase PHF8T00933SEA
Q04756HGFACHepatocyte growth factor activatorT38584SEA
P15169CPN1Carboxypeptidase N, catalytic subunitT34471SEA
Q4U2R8SLC22A6Solute carrier family 22 member 6 (by homology)T70680SEA
Q9UN88GABRQGABA(A) receptor thetaT15161SEA
P78329CYP4F2Cytochrome P450 4fT82604SEA
P17342NPR3Natriuretic peptide receptorT92963SEA
O60603TLR2Toll-like receptor 2T82078SEA
P16066NPR1Atrial natriuretic peptide receptor AT71230SEA
P78325ADAM8Cell surface antigen MS2T95761SEA
P05106ITGB3Integrin beta-3T26457SEA

Target associated diseases

TTD_ID Disease_ID Disease name ICD_11 Uniprot ID Gene names
T42446DI0117Depression[ICD-11: 6A70-6A7Z]O75899GABBR2
T42446DI0134Epilepsy/seizure[ICD-11: 8A61-8A6Z]O75899GABBR2
T42446DI0275Multiple sclerosis[ICD-11: 8A40]O75899GABBR2
T42446DI0290Narcolepsy[ICD-11: 7A20]O75899GABBR2
T38200DI0207Indeterminate colitis[ICD-11: DD72]P48066SLC6A11
T42446DI0117Depression[ICD-11: 6A70-6A7Z]O75899GABBR2
T42446DI0134Epilepsy/seizure[ICD-11: 8A61-8A6Z]O75899GABBR2
T42446DI0275Multiple sclerosis[ICD-11: 8A40]O75899GABBR2
T42446DI0290Narcolepsy[ICD-11: 7A20]O75899GABBR2
T70680DI0167Gout[ICD-11: FA25]Q4U2R8SLC22A6
T70680DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]Q4U2R8SLC22A6
T70680DI0310Ocular disease[ICD-11: N.A.]Q4U2R8SLC22A6
T50688DI0007Acquired hypermelanosis[ICD-11: ED60]P08514ITGA2B
T50688DI0030Angina pectoris[ICD-11: BA40]P08514ITGA2B
T50688DI0287Myocardial infarction[ICD-11: BA41-BA43]P08514ITGA2B
T31956DI0190Hypertension[ICD-11: BA00-BA04]Q07075ENPEP
T70680DI0167Gout[ICD-11: FA25]Q4U2R8SLC22A6
T70680DI0206Inborn purine/pyrimidine/nucleotide metabolism error[ICD-11: 5C55]Q4U2R8SLC22A6
T70680DI0310Ocular disease[ICD-11: N.A.]Q4U2R8SLC22A6
T92963DI0175Heart failure[ICD-11: BD10-BD1Z]P17342NPR3
T82078DI0346Prostate cancer[ICD-11: 2C82]O60603TLR2
T71230DI0175Heart failure[ICD-11: BD10-BD1Z]P16066NPR1

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