Gene Symbol | Chromosome | CpG Start | CpG End | Name | SNP Start | SNP End | rsID | Strand | ref NCBI | Observed | No of CpGs | CpG% | GC% | Observed/Expected Ratio | Function |
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PRODH | chr22 | 18923470 | 18923840 | CpG: 55 | 18923584 | 18923585 | rs1808323 | + | C | C/G | 55 | 29.7 | 77.8 | 0.98 | coding-synon,intron |
PRODH | chr22 | 18923470 | 18923840 | CpG: 55 | 18923628 | 18923629 | rs146648839 | + | C | C/T | 55 | 29.7 | 77.8 | 0.98 | intron,missense |
PRODH | chr22 | 18923470 | 18923840 | CpG: 55 | 18923712 | 18923713 | rs3815655 | + | G | A/G | 55 | 29.7 | 77.8 | 0.98 | intron,missense |
PRODH | chr22 | 18923470 | 18923840 | CpG: 55 | 18923744 | 18923745 | rs2008720 | - | G | A/C | 55 | 29.7 | 77.8 | 0.98 | intron,missense |
PRODH | chr22 | 18923470 | 18923840 | CpG: 55 | 18923809 | 18923810 | rs113812211 | + | G | C/G | 55 | 29.7 | 77.8 | 0.98 | intron,untranslated-5 |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19894383 | 19894384 | rs5993858 | + | C | C/T | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19894422 | 19894423 | rs79995555 | + | C | C/T | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19894448 | 19894449 | rs150337947 | + | A | A/C | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19894581 | 19894582 | rs149586631 | + | G | A/G | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19894975 | 19894976 | rs62222126 | + | G | A/G | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19894981 | 19894982 | rs62222128 | + | A | A/G/T | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19895130 | 19895131 | rs73148970 | + | C | C/T | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19895330 | 19895331 | rs10222209 | + | A | A/G | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19895356 | 19895357 | rs112206580 | + | G | A/G | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19894383 | 19895428 | CpG: 68 | 19895372 | 19895373 | rs112587800 | + | A | A/G | 68 | 13 | 64 | 0.69 | intron |
TXNRD2 | chr22 | 19929096 | 19929468 | CpG: 47 | 19929141 | 19929141 | rs45511293 | + | - | -/G | 47 | 25.3 | 69.4 | 1.06 | intron,near-gene-5 |
ACAD9 | chr3 | 128598176 | 128598703 | CpG: 55 | 128598469 | 128598471 | rs28384401 | + | GT | -/GT | 55 | 20.9 | 66.8 | 0.94 | ncRNA,untranslated-5 |
ACAD9 | chr3 | 128598176 | 128598703 | CpG: 55 | 128598478 | 128598480 | rs200105043 | + | TC | -/TC | 55 | 20.9 | 66.8 | 0.94 | ncRNA,untranslated-5 |
ACAD9 | chr3 | 128598176 | 128598703 | CpG: 55 | 128598490 | 128598490 | rs28384402 | + | - | -/TAAG | 55 | 20.9 | 66.8 | 0.94 | ncRNA,untranslated-5 |
ETFDH | chr4 | 159592617 | 159593587 | CpG: 94 | 159593369 | 159593370 | rs113981461 | + | G | A/G | 94 | 19.4 | 65.5 | 0.91 | near-gene-5,ncRNA,untranslated-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7868865 | 7868866 | rs3822445 | - | G | C/G | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869234 | 7869235 | rs72716536 | + | T | C/T | 116 | 23.7 | 71.4 | 0.94 | near-gene-5,untranslated-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869383 | 7869386 | rs150132234 | + | CTC | -/CTC | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869385 | 7869388 | rs141755990 | + | CCT | -/CCT/CCTCT | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869455 | 7869456 | rs34828626 | + | C | -/C | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869577 | 7869578 | rs75888760 | + | C | C/T | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869590 | 7869591 | rs138374466 | + | C | C/T | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
MTRR | chr5 | 7868863 | 7869840 | CpG: 116 | 7869702 | 7869703 | rs75772655 | + | G | A/G | 116 | 23.7 | 71.4 | 0.94 | intron,near-gene-5 |
SDHA | chr5 | 218036 | 219128 | CpG: 117 | 218381 | 218381 | rs3214561 | - | - | -/G | 117 | 21.4 | 68.9 | 0.9 | near-gene-5,untranslated-5 |
SDHA | chr5 | 218036 | 219128 | CpG: 117 | 218387 | 218387 | rs35805262 | + | - | -/C | 117 | 21.4 | 68.9 | 0.9 | near-gene-5,untranslated-5 |
SDHA | chr5 | 218036 | 219128 | CpG: 117 | 218597 | 218598 | rs2303740 | - | G | C/T | 117 | 21.4 | 68.9 | 0.9 | intron,near-gene-5 |
SDHA | chr5 | 218036 | 219128 | CpG: 117 | 218809 | 218810 | rs1864090 | - | C | A/G | 117 | 21.4 | 68.9 | 0.9 | intron,near-gene-5 |
SDHA | chr5 | 218036 | 219128 | CpG: 117 | 219021 | 219022 | rs10054902 | + | G | A/G | 117 | 21.4 | 68.9 | 0.9 | intron,near-gene-5 |
ENPP1 | chr6 | 132128727 | 132129563 | CpG: 75 | 132129362 | 132129363 | rs200362492 | + | C | A/C | 75 | 17.9 | 58 | 1.07 | missense |
DLD | chr7 | 107531480 | 107531983 | CpG: 51 | 107531728 | 107531729 | rs75077312 | + | G | A/G | 51 | 20.3 | 68 | 0.9 | missense |
DLD | chr7 | 107531480 | 107531983 | CpG: 51 | 107531932 | 107531933 | rs115427105 | + | G | A/G | 51 | 20.3 | 68 | 0.9 | intron |
POR | chr7 | 75543965 | 75544775 | CpG: 88 | 75544211 | 75544212 | rs12537282 | + | C | C/G/T | 88 | 21.7 | 72 | 0.84 | near-gene-5 |
POR | chr7 | 75543965 | 75544775 | CpG: 88 | 75544246 | 75544247 | rs72553971 | + | C | A/C | 88 | 21.7 | 72 | 0.84 | near-gene-5 |
POR | chr7 | 75543965 | 75544775 | CpG: 88 | 75544267 | 75544268 | rs72553972 | + | C | A/C | 88 | 21.7 | 72 | 0.84 | near-gene-5 |
POR | chr7 | 75543965 | 75544775 | CpG: 88 | 75544454 | 75544455 | rs3823884 | - | A | G/T | 88 | 21.7 | 72 | 0.84 | near-gene-5,untranslated-5 |
POR | chr7 | 75543965 | 75544775 | CpG: 88 | 75544633 | 75544634 | rs3735508 | - | G | C/T | 88 | 21.7 | 72 | 0.84 | intron,near-gene-3 |
SUGCT | chr7 | 40173881 | 40175018 | CpG: 105 | 40174672 | 40174673 | rs7793074 | + | C | A/C | 105 | 18.5 | 65.4 | 0.86 | coding-synon,near-gene-5 |
SLC25A32 | chr8 | 104426894 | 104427823 | CpG: 98 | 104426909 | 104426910 | rs5893654 | + | T | -/T | 98 | 21.1 | 63.8 | 1.04 | intron,near-gene-5 |
SLC25A32 | chr8 | 104426894 | 104427823 | CpG: 98 | 104427358 | 104427359 | rs3134295 | + | A | A/C | 98 | 21.1 | 63.8 | 1.04 | ncRNA,missense,untranslated-5 |
SLC52A2 | chr8 | 145581331 | 145582765 | CpG: 157 | 145582247 | 145582248 | rs144713518 | + | G | A/G | 157 | 21.9 | 69.7 | 0.9 | near-gene-5,ncRNA,untranslated-5 |
SLC52A2 | chr8 | 145581331 | 145582765 | CpG: 157 | 145582293 | 145582294 | rs115940535 | + | C | A/C | 157 | 21.9 | 69.7 | 0.9 | intron,near-gene-5,ncRNA,untranslated-5 |
SLC52A2 | chr8 | 145581331 | 145582765 | CpG: 157 | 145582739 | 145582740 | rs114304511 | + | A | A/G | 157 | 21.9 | 69.7 | 0.9 | intron,near-gene-5 |
SLC52A2 | chr8 | 145581331 | 145582765 | CpG: 157 | 145577823 | 145577824 | rs880701 | + | C | C/G | 157 | 21.9 | 69.7 | 0.9 | intron |
SLC52A2 | chr8 | 145581331 | 145582765 | CpG: 157 | 145577828 | 145577829 | rs880702 | + | A | A/C | 157 | 21.9 | 69.7 | 0.9 | intron |
SLC52A2 | chr8 | 145581331 | 145582765 | CpG: 157 | 145577898 | 145577899 | rs116055973 | + | C | C/T | 157 | 21.9 | 69.7 | 0.9 | intron,ncRNA,missense |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145577998 | 145577999 | rs2272664 | - | T | A/T | 96 | 18.4 | 68.4 | 0.79 | intron |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145581556 | 145581557 | rs2280840 | + | G | A/G | 96 | 18.4 | 68.4 | 0.79 | intron,near-gene-5 |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145581949 | 145581950 | rs200282665 | + | C | C/G | 96 | 18.4 | 68.4 | 0.79 | near-gene-5,missense |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145582121 | 145582122 | rs183286864 | + | C | C/T | 96 | 18.4 | 68.4 | 0.79 | near-gene-5,untranslated-5 |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79008643 | 79008644 | rs62567919 | + | G | G/T | 157 | 21.9 | 69.7 | 0.9 | intron |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79008673 | 79008674 | rs7045064 | + | T | C/T | 157 | 21.9 | 69.7 | 0.9 | intron |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79008946 | 79008947 | rs41288757 | + | C | C/T | 157 | 21.9 | 69.7 | 0.9 | intron |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79009138 | 79009139 | rs3739729 | + | A | A/G | 157 | 21.9 | 69.7 | 0.9 | untranslated-5 |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79009203 | 79009204 | rs11548954 | - | C | A/G | 157 | 21.9 | 69.7 | 0.9 | untranslated-5 |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79009235 | 79009236 | rs11548952 | - | G | C/T | 157 | 21.9 | 69.7 | 0.9 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009255 | 79009256 | rs7026641 | + | C | C/T | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009289 | 79009290 | rs142046364 | + | C | A/C | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009346 | 79009347 | rs3739730 | + | G | A/G | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009365 | 79009366 | rs11548955 | - | G | C/T | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009421 | 79009422 | rs114707234 | + | C | C/T | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |