Riboflavin SNPs in CpG Data

Gene Symbol	Chromosome	CpG Start	CpG End	Name	SNP Start	SNP End	rsID	Strand	ref NCBI	Observed	No of CpGs	CpG%	GC%	Observed/Expected Ratio	Function
DHODH	chr16	72042347	72042888	CpG: 50	72042634	72042635	rs34270657	+	A	A/G	50	18.5	67.1	0.85	near-gene-5
DHODH	chr16	72042347	72042888	CpG: 50	72042681	72042682	rs3213422	+	A	A/C	50	18.5	67.1	0.85	missense
DHODH	chr16	72042347	72042888	CpG: 50	72042824	72042825	rs3213423	+	T	G/T	50	18.5	67.1	0.85	intron
GFER	chr16	2033492	2034800	CpG: 137	2034660	2034661	rs2075812	+	T	C/T	137	20.9	63.3	1.05	intron
ACADVL	chr17	7123038	7123718	CpG: 62	7123240	7123240	rs421019	-	-	A/G	62	18.2	66.3	0.84	intron,untranslated-5
ACADVL	chr17	7123038	7123718	CpG: 62	7123240	7123240	rs139223575	+	-	-/GGGCGTGCAGGAC	62	18.2	66.3	0.84	cds-indel
ACADVL	chr17	7123038	7123718	CpG: 62	7123351	7123352	rs2230179	+	C	C/T	62	18.2	66.3	0.84	intron,missense,untranslated-5
ACADVL	chr17	7123038	7123718	CpG: 62	7123505	7123506	rs2230178	+	G	A/G	62	18.2	66.3	0.84	near-gene-5,missense,untranslated-5
ACADVL	chr17	7123038	7123718	CpG: 62	7123614	7123615	rs77289756	+	T	G/T	62	18.2	66.3	0.84	intron,near-gene-5
ACOX1	chr17	73974971	73975731	CpG: 69	73975227	73975227	rs200824937	+	-	-/C	69	18.2	64.1	0.89	near-gene-5,untranslated-5
ACOX1	chr17	73974971	73975731	CpG: 69	73975470	73975471	rs3760132	+	C	C/G/T	69	18.2	64.1	0.89	ncRNA,untranslated-5
FDXR	chr17	72868922	72869703	CpG: 65	72869077	72869078	rs492095	-	A	C/T	65	16.6	64.7	0.84	ncRNA,untranslated-5
FDXR	chr17	72868922	72869703	CpG: 65	72869105	72869106	rs35832918	-	A	C/T	65	16.6	64.7	0.84	ncRNA,untranslated-5
BLVRB	chr19	40971476	40973393	CpG: 151	40971720	40971721	rs45441502	-	A	C/T	151	15.8	60.9	0.86	untranslated-5
ETFB	chr19	51869400	51871587	CpG: 153	51869637	51869638	rs111454736	+	G	A/G	153	14	65.6	0.66	untranslated-5
GCDH	chr19	13002417	13002656	CpG: 18	13002562	13002563	rs2242517	+	T	G/T	18	15.1	66.5	0.72	intron,ncRNA
GCDH	chr19	13002417	13002656	CpG: 18	13002565	13002566	rs76650855	+	G	G/T	18	15.1	66.5	0.72	intron,ncRNA
ACP1	chr2	263400	265238	CpG: 176	264878	264879	rs111341344	+	C	A/C	176	19.2	66.8	0.87	near-gene-5,ncRNA,untranslated-5
ACP1	chr2	263400	265238	CpG: 176	264984	264985	rs11691572	+	G	G/T	176	19.2	66.8	0.87	near-gene-5,ncRNA,missense
ACP1	chr2	263400	265238	CpG: 176	265014	265015	rs116051772	+	G	A/G	176	19.2	66.8	0.87	intron,near-gene-5
ACP1	chr2	263400	265238	CpG: 176	265016	265017	rs143584646	+	C	C/T	176	19.2	66.8	0.87	intron,near-gene-5
ACP1	chr2	263400	265238	CpG: 176	265103	265104	rs7588515	+	G	A/G	176	19.2	66.8	0.87	intron,near-gene-5
AGPS	chr2	178257227	178257892	CpG: 79	178257390	178257391	rs113671272	+	G	A/G	79	23.8	72	0.94	near-gene-5,ncRNA
AGPS	chr2	178257227	178257892	CpG: 79	178257663	178257664	rs34442536	-	C	A/G	79	23.8	72	0.94	coding-synon,near-gene-5
AGPS	chr2	178257227	178257892	CpG: 79	178257723	178257724	rs34744592	-	A	C/T	79	23.8	72	0.94	coding-synon,near-gene-5
AGPS	chr2	178257227	178257892	CpG: 79	178257838	178257839	rs114901772	+	A	A/C	79	23.8	72	0.94	intron,near-gene-5
D2HGDH	chr2	242673653	242675106	CpG: 176	242674103	242674104	rs7370843	+	A	A/G	176	24.2	73.8	0.9	untranslated-5
D2HGDH	chr2	242673653	242675106	CpG: 176	242674268	242674270	rs78312666	+	AC	-/AC	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674282	242674283	rs139818949	+	C	C/T	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674312	242674313	rs79248835	+	A	A/C	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674350	242674351	rs80241045	+	C	C/G	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674351	242674352	rs113276310	+	C	C/G	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674446	242674447	rs139210804	+	G	A/G	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674472	242674473	rs149964492	+	C	C/G	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674548	242674549	rs62191976	+	C	C/G	176	24.2	73.8	0.9	untranslated-5
D2HGDH	chr2	242673653	242675106	CpG: 176	242674681	242674682	rs4675887	-	C	C/G	176	24.2	73.8	0.9	missense
D2HGDH	chr2	242673653	242675106	CpG: 176	242674802	242674803	rs77940364	+	G	A/G	176	24.2	73.8	0.9	missense
D2HGDH	chr2	242673653	242675106	CpG: 176	242674939	242674940	rs148813816	+	G	A/G	176	24.2	73.8	0.9	intron
D2HGDH	chr2	242673653	242675106	CpG: 176	242674958	242674959	rs62191977	+	T	G/T	176	24.2	73.8	0.9	intron
SLC52A3	chr20	741633	742058	CpG: 41	741652	741653	rs201635560	+	C	-/C	41	19.3	68.7	0.83	untranslated-3
SLC52A3	chr20	741633	742058	CpG: 41	741653	741654	rs3215628	+	G	-/G	41	19.3	68.7	0.83	untranslated-3
SLC52A3	chr20	741633	742058	CpG: 41	741657	741658	rs200457878	+	T	-/T	41	19.3	68.7	0.83	untranslated-3
SLC52A3	chr20	741633	742058	CpG: 41	741846	741847	rs910857	+	A	A/G	41	19.3	68.7	0.83	coding-synon
CYB5R3	chr22	43045009	43045679	CpG: 56	43045294	43045295	rs8190370	-	G	C/T	56	16.7	55.4	1.09	intron
CYB5R3	chr22	43045009	43045679	CpG: 56	43045457	43045458	rs8190368	-	G	A/C	56	16.7	55.4	1.09	near-gene-5
CYB5R3	chr22	43045009	43045679	CpG: 56	43045512	43045512	rs8190367	-	-	-/A	56	16.7	55.4	1.09	near-gene-5
CYB5R3	chr22	43045009	43045679	CpG: 56	43045536	43045537	rs8190366	-	T	A/G	56	16.7	55.4	1.09	near-gene-5
CYB5R3	chr22	43045009	43045679	CpG: 56	43045564	43045565	rs8190365	-	C	A/G	56	16.7	55.4	1.09	near-gene-5
CYB5R3	chr22	43045009	43045679	CpG: 56	43045571	43045572	rs73888347	+	C	A/C	56	16.7	55.4	1.09	near-gene-5
PRODH	chr22	18923470	18923840	CpG: 55	18923523	18923524	rs3815653	+	G	A/G	55	29.7	77.8	0.98	intron
PRODH	chr22	18923470	18923840	CpG: 55	18923584	18923585	rs1808323	+	C	C/G	55	29.7	77.8	0.98	coding-synon,intron
PRODH	chr22	18923470	18923840	CpG: 55	18923628	18923629	rs146648839	+	C	C/T	55	29.7	77.8	0.98	intron,missense
PRODH	chr22	18923470	18923840	CpG: 55	18923712	18923713	rs3815655	+	G	A/G	55	29.7	77.8	0.98	intron,missense
PRODH	chr22	18923470	18923840	CpG: 55	18923744	18923745	rs2008720	-	G	A/C	55	29.7	77.8	0.98	intron,missense
PRODH	chr22	18923470	18923840	CpG: 55	18923809	18923810	rs113812211	+	G	C/G	55	29.7	77.8	0.98	intron,untranslated-5
TXNRD2	chr22	19894383	19895428	CpG: 68	19894383	19894384	rs5993858	+	C	C/T	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19894422	19894423	rs79995555	+	C	C/T	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19894448	19894449	rs150337947	+	A	A/C	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19894581	19894582	rs149586631	+	G	A/G	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19894975	19894976	rs62222126	+	G	A/G	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19894981	19894982	rs62222128	+	A	A/G/T	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19895130	19895131	rs73148970	+	C	C/T	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19895330	19895331	rs10222209	+	A	A/G	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19895356	19895357	rs112206580	+	G	A/G	68	13	64	0.69	intron
TXNRD2	chr22	19894383	19895428	CpG: 68	19895372	19895373	rs112587800	+	A	A/G	68	13	64	0.69	intron
TXNRD2	chr22	19929096	19929468	CpG: 47	19929141	19929141	rs45511293	+	-	-/G	47	25.3	69.4	1.06	intron,near-gene-5
ACAD9	chr3	128598176	128598703	CpG: 55	128598469	128598471	rs28384401	+	GT	-/GT	55	20.9	66.8	0.94	ncRNA,untranslated-5
ACAD9	chr3	128598176	128598703	CpG: 55	128598478	128598480	rs200105043	+	TC	-/TC	55	20.9	66.8	0.94	ncRNA,untranslated-5
ACAD9	chr3	128598176	128598703	CpG: 55	128598490	128598490	rs28384402	+	-	-/TAAG	55	20.9	66.8	0.94	ncRNA,untranslated-5
ETFDH	chr4	159592617	159593587	CpG: 94	159593369	159593370	rs113981461	+	G	A/G	94	19.4	65.5	0.91	near-gene-5,ncRNA,untranslated-5
MTRR	chr5	7868863	7869840	CpG: 116	7868865	7868866	rs3822445	-	G	C/G	116	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869234	7869235	rs72716536	+	T	C/T	116	23.7	71.4	0.94	near-gene-5,untranslated-5
MTRR	chr5	7868863	7869840	CpG: 116	7869383	7869386	rs150132234	+	CTC	-/CTC	116	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869385	7869388	rs141755990	+	CCT	-/CCT/CCTCT	116	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869455	7869456	rs34828626	+	C	-/C	116	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869577	7869578	rs75888760	+	C	C/T	116	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869590	7869591	rs138374466	+	C	C/T	116	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869702	7869703	rs75772655	+	G	A/G	116	23.7	71.4	0.94	intron,near-gene-5
SDHA	chr5	218036	219128	CpG: 117	218381	218381	rs3214561	-	-	-/G	117	21.4	68.9	0.9	near-gene-5,untranslated-5
SDHA	chr5	218036	219128	CpG: 117	218387	218387	rs35805262	+	-	-/C	117	21.4	68.9	0.9	near-gene-5,untranslated-5
SDHA	chr5	218036	219128	CpG: 117	218597	218598	rs2303740	-	G	C/T	117	21.4	68.9	0.9	intron,near-gene-5
SDHA	chr5	218036	219128	CpG: 117	218809	218810	rs1864090	-	C	A/G	117	21.4	68.9	0.9	intron,near-gene-5
SDHA	chr5	218036	219128	CpG: 117	219021	219022	rs10054902	+	G	A/G	117	21.4	68.9	0.9	intron,near-gene-5
ENPP1	chr6	132128727	132129563	CpG: 75	132129362	132129363	rs200362492	+	C	A/C	75	17.9	58	1.07	missense
DLD	chr7	107531480	107531983	CpG: 51	107531728	107531729	rs75077312	+	G	A/G	51	20.3	68	0.9	missense
DLD	chr7	107531480	107531983	CpG: 51	107531932	107531933	rs115427105	+	G	A/G	51	20.3	68	0.9	intron
POR	chr7	75543965	75544775	CpG: 88	75544211	75544212	rs12537282	+	C	C/G/T	88	21.7	72	0.84	near-gene-5
POR	chr7	75543965	75544775	CpG: 88	75544246	75544247	rs72553971	+	C	A/C	88	21.7	72	0.84	near-gene-5
POR	chr7	75543965	75544775	CpG: 88	75544267	75544268	rs72553972	+	C	A/C	88	21.7	72	0.84	near-gene-5
POR	chr7	75543965	75544775	CpG: 88	75544454	75544455	rs3823884	-	A	G/T	88	21.7	72	0.84	near-gene-5,untranslated-5
POR	chr7	75543965	75544775	CpG: 88	75544633	75544634	rs3735508	-	G	C/T	88	21.7	72	0.84	intron,near-gene-3
SUGCT	chr7	40173881	40175018	CpG: 105	40174672	40174673	rs7793074	+	C	A/C	105	18.5	65.4	0.86	coding-synon,near-gene-5
SLC25A32	chr8	104426894	104427823	CpG: 98	104426909	104426910	rs5893654	+	T	-/T	98	21.1	63.8	1.04	intron,near-gene-5
SLC25A32	chr8	104426894	104427823	CpG: 98	104427358	104427359	rs3134295	+	A	A/C	98	21.1	63.8	1.04	ncRNA,missense,untranslated-5
SLC52A2	chr8	145581331	145582765	CpG: 157	145582247	145582248	rs144713518	+	G	A/G	157	21.9	69.7	0.9	near-gene-5,ncRNA,untranslated-5
SLC52A2	chr8	145581331	145582765	CpG: 157	145582293	145582294	rs115940535	+	C	A/C	157	21.9	69.7	0.9	intron,near-gene-5,ncRNA,untranslated-5
SLC52A2	chr8	145581331	145582765	CpG: 157	145582739	145582740	rs114304511	+	A	A/G	157	21.9	69.7	0.9	intron,near-gene-5
SLC52A2	chr8	145581331	145582765	CpG: 157	145577823	145577824	rs880701	+	C	C/G	157	21.9	69.7	0.9	intron
SLC52A2	chr8	145581331	145582765	CpG: 157	145577828	145577829	rs880702	+	A	A/C	157	21.9	69.7	0.9	intron
SLC52A2	chr8	145581331	145582765	CpG: 157	145577898	145577899	rs116055973	+	C	C/T	157	21.9	69.7	0.9	intron,ncRNA,missense

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