Riboflavin SNPS Near Gene 5

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Class	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ENPP3	chr6	132023033	132023034	rs150578170	+	A	A/G	single	intron,near-gene-5	2	1000GENOMES,GMI,	2	0.828283
ENPP3	chr6	132023129	132023131	rs201952293	+	AT	-/AT	deletion	intron,near-gene-5	3	1000GENOMES,LUNTER,SSMP,	2	0.042700
ENPP3	chr6	132023165	132023166	rs200398525	+	A	-/A	deletion	intron,near-gene-5	3	1000GENOMES,BILGI_BIOE,LUNTER,	2	0.058770
ENPP3	chr6	132023625	132023627	rs140349321	+	TT	-/TT	deletion	intron,near-gene-5	2	1000GENOMES,LUNTER,	2	0.068411
ENPP3	chr6	132033371	132033372	rs143146055	+	G	A/G	single	intron,near-gene-5	2	1000GENOMES,GMI,	2	0.166208
ENPP3	chr6	132033682	132033683	rs17090727	+	A	A/G	single	intron,near-gene-5	2	1000GENOMES,PERLEGEN,	2	0.960708
ENPP3	chr6	132033691	132033692	rs17090723	+	T	C/T	single	intron,near-gene-5	1	PERLEGEN,	2	0.335714
POR	chr7	75542786	75542787	rs7799657	+	C	C/T	single	near-gene-5	3	1000GENOMES,HGSV,WI_SSAHASNP,	2	0.988084
POR	chr7	75542947	75542948	rs149371800	+	A	A/G	single	near-gene-5	1	1000GENOMES,	2	0.984848
POR	chr7	75544211	75544212	rs12537282	+	C	C/G/T	single	near-gene-5	7	1000GENOMES,ABI,CSHL-HAPMAP,ILLUMINA,KRIBB_YJKIM,PHARMGKB_PMT,TISHKOFF,	2	0.952681
POR	chr7	75544246	75544247	rs72553971	+	C	A/C	single	near-gene-5	3	1000GENOMES,ILLUMINA,PHARMGKB_PMT,	2	0.026216
POR	chr7	75544267	75544268	rs72553972	+	C	A/C	single	near-gene-5	4	1000GENOMES,ILLUMINA,PHARMGKB_PMT,SSMP,	2	0.089459
POR	chr7	75544454	75544455	rs3823884	-	A	G/T	single	near-gene-5,untranslated-5	16	1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,ILLUMINA,PERLEGEN,PHARMGKB_PMT,PJP,SSMP,WI_SSAHASNP,WUGSC_SSAHASNP,YUSUKE,	2	0.430056
POR	chr7	75571305	75571306	rs58648820	+	G	A/G	single	intron,near-gene-5	4	1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF,	2	0.072477
POR	chr7	75571335	75571336	rs112274825	+	A	A/C	single	intron,near-gene-5	2	1000GENOMES,COMPLETE_GENOMICS,	2	0.980275
POR	chr7	75572557	75572558	rs139772877	+	C	C/T	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.983471
POR	chr7	75572923	75572924	rs73702701	+	A	A/C	single	intron,near-gene-5	4	1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.978440
SUGCT	chr7	40174672	40174673	rs7793074	+	C	A/C	single	coding-synon,near-gene-5	4	1000GENOMES,ILLUMINA,NHLBI-ESP,WI_SSAHASNP,	2	0.035714
SUGCT	chr7	40175243	40175244	rs142237061	+	T	C/T	single	intron,near-gene-5	2	1000GENOMES,ILLUMINA,	2	0.013774
SUGCT	chr7	40175963	40175964	rs115025708	+	G	A/G	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.017422
SUGCT	chr7	40175983	40175984	rs186511123	+	T	A/T	single	intron,near-gene-5	1	1000GENOMES,	2	0.010101
SLC25A32	chr8	104425303	104425304	rs3098241	-	A	C/T	single	intron,near-gene-5	18	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.216899
SLC25A32	chr8	104425608	104425609	rs3134291	+	C	C/T	single	intron,near-gene-5	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.547898
SLC25A32	chr8	104425879	104425880	rs115361595	+	A	A/G	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.987369
SLC25A32	chr8	104426044	104426045	rs3134292	+	C	A/C	single	intron,near-gene-5	18	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.258745
SLC25A32	chr8	104426083	104426084	rs3134293	+	C	C/T	single	intron,near-gene-5	13	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSMP,	2	0.793236
SLC25A32	chr8	104426244	104426245	rs3133817	+	A	A/G	single	intron,near-gene-5	18	1000GENOMES,ABI,AFFY,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,YUSUKE,	2	0.736441
SLC25A32	chr8	104426530	104426531	rs28630640	+	C	C/T	single	intron,near-gene-5	10	1000GENOMES,ABI,BL,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.943681
SLC25A32	chr8	104426791	104426792	rs73699799	+	C	C/T	single	intron,near-gene-5	2	1000GENOMES,ILLUMINA-UK,	2	0.987615
SLC25A32	chr8	104426797	104426798	rs3134294	+	A	A/C	single	intron,near-gene-5	2	1000GENOMES,SC_JCM,	2	0.966057
SLC25A32	chr8	104426909	104426910	rs5893654	+	T	-/T	deletion	intron,near-gene-5	3	1000GENOMES,ABI,DEVINE_LAB,	2	0.443119
SLC52A2	chr8	145582247	145582248	rs144713518	+	G	A/G	single	near-gene-5,ncRNA,untranslated-5	1	1000GENOMES,	2	0.012397
SLC52A2	chr8	145582293	145582294	rs115940535	+	C	A/C	single	intron,near-gene-5,ncRNA,untranslated-5	1	1000GENOMES,	2	0.030923
SLC52A2	chr8	145582739	145582740	rs114304511	+	A	A/G	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.982578
SLC52A2	chr8	145582808	145582809	rs115365198	+	C	C/G	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.985927
SLC52A2	chr8	145582838	145582839	rs3817681	+	T	C/T	single	intron,near-gene-5	15	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,YUSUKE,	2	0.417187
SLC52A2	chr8	145578811	145578812	rs4515595	-	G	C/T	single	near-gene-3,near-gene-5	12	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.710430
SLC52A2	chr8	145579703	145579704	rs61747069	+	T	C/T	single	near-gene-5,missense	2	CORNELL,NHLBI-ESP,	2	0.016667
SLC52A2	chr8	145579791	145579792	rs2272665	+	C	A/C	single	near-gene-5,missense	3	ILLUMINA,KRIBB_YJKIM,YUSUKE,	2	0.017913
SLC52A2	chr8	145579930	145579931	rs200026961	+	C	C/G	single	intron,near-gene-5	2	BILGI_BIOE,CLINSEQ_SNP,	2	0.820500
SLC52A2	chr8	145579931	145579932	rs200985955	+	C	C/T	single	intron,near-gene-5	2	BILGI_BIOE,CLINSEQ_SNP,	2	0.834500
SLC52A2	chr8	145579935	145579936	rs112211890	+	C	C/T	single	intron,near-gene-5	3	CLINSEQ_SNP,COMPLETE_GENOMICS,TISHKOFF,	2	0.773085
SLC52A2	chr8	145579952	145579953	rs4993862	-	T	A/G/T	single	intron,near-gene-5	2	CLINSEQ_SNP,DEVINE_LAB,	3	0.617117
SLC52A2	chr8	145579961	145579962	rs77494279	+	C	C/T	single	near-gene-5,missense	3	CLINSEQ_SNP,ENSEMBL,EXOME_CHIP,	2	0.932166
SLC52A2	chr8	145579963	145579964	rs75159950	+	A	A/G	single	coding-synon,near-gene-5	4	CLINSEQ_SNP,ENSEMBL,EXOME_CHIP,ILLUMINA,	2	0.927680
SLC52A2	chr8	145579966	145579967	rs77157066	+	T	C/T	single	coding-synon,near-gene-5	2	CLINSEQ_SNP,ENSEMBL,	2	0.073788
SLC52A2	chr8	145580534	145580535	rs61746974	+	C	C/G	single	near-gene-5,missense	9	1000GENOMES,CLINSEQ_SNP,CORNELL,EXOME_CHIP,GOLDSTEINLAB,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.935919
SLC52A2	chr8	145580983	145580984	rs2272666	+	A	A/G	single	intron,near-gene-5	21	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.387120
SLC52A2	chr8	145581004	145581005	rs115001185	+	G	G/T	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.981707
SLC52A2	chr8	145581023	145581024	rs116687799	+	C	C/T	single	intron,near-gene-5	1	1000GENOMES,	2	0.981707
SLC52A2	chr8	145581556	145581557	rs2280840	+	G	A/G	single	intron,near-gene-5	17	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.480154
SLC52A2	chr8	145581949	145581950	rs200282665	+	C	C/G	single	near-gene-5,missense	2	1000GENOMES,NHLBI-ESP,	2	0.985308
SLC52A2	chr8	145582121	145582122	rs183286864	+	C	C/T	single	near-gene-5,untranslated-5	3	1000GENOMES,NHLBI-ESP,WARNICH_LAB,	2	0.978421
AIFM1	chrX	129272440	129272441	rs12010190	+	A	A/G	single	intron,near-gene-5	4	1000GENOMES,ABI,CSHL-HAPMAP,TISHKOFF,	2	0.980048
AIFM1	chrX	129272448	129272449	rs182805215	+	T	A/T	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.029021
AIFM1	chrX	129272448	129272449	rs200686111	+	T	-/T	deletion	intron,near-gene-5	1	1000GENOMES,	2	0.024184
AIFM1	chrX	129272519	129272520	rs12014323	+	C	C/T	single	intron,near-gene-5	9	1000GENOMES,ABI,AFFY,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,	2	0.968689
AIFM1	chrX	129272616	129272617	rs12014115	+	G	A/G	single	coding-synon,intron,near-gene-5	9	1000GENOMES,ABI,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,ILLUMINA,NHLBI-ESP,SSAHASNP,TISHKOFF,	2	0.033072
AIFM1	chrX	129273247	129273248	rs209999	+	A	A/G	single	intron,near-gene-5	14	1000GENOMES,ABI,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.553679

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