Riboflavin ncRNA Data

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Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Class	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ACADM	chr1	76251883	76251884	rs76671446	+	G	A/G	single	near-gene-5,ncRNA,untranslated-5	3	1000GENOMES,CLINSEQ_SNP,NHLBI-ESP,	2	0.011890
MTHFR	chr1	11866182	11866183	rs13306560	-	C	A/G	single	near-gene-5,ncRNA,untranslated-5	7	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,PHARMGKB_PPII,SSMP,	2	0.019176
FOXRED1	chr11	126139099	126139100	rs1786702	+	T	C/T	single	near-gene-5,ncRNA,untranslated-5	24	1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.733031
FOXRED1	chr11	126141397	126141398	rs34027332	+	A	A/G	single	intron,ncRNA,missense	1	APPLERA_GI,	2	0.987179
FOXRED1	chr11	126147696	126147697	rs667627	-	G	C/T	single	ncRNA,untranslated-3	8	1000GENOMES,CGAP-GAI,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,SC_JCM,SSMP,TISHKOFF,	2	0.846738
FOXRED1	chr11	126147712	126147713	rs594318	-	C	C/G	single	ncRNA,untranslated-3	15	1000GENOMES,ABI,BCMHGSC_JDW,BGI,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.312212
FOXRED1	chr11	126147773	126147774	rs77902129	+	T	C/T	single	ncRNA,untranslated-3	4	1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.020642
L2HGDH	chr14	50779228	50779229	rs12892575	+	C	C/T	single	near-gene-5,ncRNA,untranslated-5	13	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,	2	0.433269
L2HGDH	chr14	50779263	50779264	rs117249640	+	A	A/C	single	near-gene-5,ncRNA,untranslated-5	1	1000GENOMES,	2	0.986510
ETFA	chr15	76551694	76551695	rs111734384	+	A	A/G	single	intron,ncRNA	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.965138
ETFA	chr15	76551776	76551777	rs116240154	+	G	A/G	single	intron,ncRNA	2	1000GENOMES,ILLUMINA,	2	0.010453
ETFA	chr15	76551851	76551852	rs12913096	+	G	A/G	single	intron,ncRNA	16	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.344171
ETFA	chr15	76551971	76551972	rs76319667	+	G	A/G	single	intron,ncRNA	2	1000GENOMES,ENSEMBL,	2	0.039908
ETFA	chr15	76552486	76552486	rs199562413	+	-	-/C	insertion	intron,ncRNA	1	1000GENOMES,	2	0.969697
ACOX1	chr17	73975470	73975471	rs3760132	+	C	C/G/T	single	ncRNA,untranslated-5	10	1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,PERLEGEN,SSMP,TISHKOFF,YUSUKE,	3	0.924171
FDXR	chr17	72858708	72858709	rs34607406	-	G	C/T	single	ncRNA,untranslated-3	2	1000GENOMES,EGP_SNPS,	2	0.989839
FDXR	chr17	72858799	72858800	rs35033646	-	G	A/C	single	ncRNA,untranslated-3	4	1000GENOMES,EGP_SNPS,SSMP,TISHKOFF,	2	0.041914
FDXR	chr17	72859058	72859059	rs34435361	-	T	A/G	single	coding-synon,ncRNA	5	1000GENOMES,EGP_SNPS,ILLUMINA,NHLBI-ESP,SEATTLESEQ,	2	0.982341
FDXR	chr17	72860099	72860100	rs33991203	-	G	C/T	single	coding-synon,ncRNA	6	1000GENOMES,APPLERA_GI,BUSHMAN,EGP_SNPS,NHLBI-ESP,TISHKOFF,	2	0.987514
FDXR	chr17	72860652	72860653	rs34038065	-	G	C/T	single	ncRNA,missense	10	1000GENOMES,CLINSEQ_SNP,CORNELL,EGP_SNPS,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF,	2	0.976671
FDXR	chr17	72860653	72860654	rs2070921	-	G	C/T	single	coding-synon,ncRNA	13	1000GENOMES,AFFY,CGAP-GAI,CLINSEQ_SNP,EGP_SNPS,GMI,HGBASE,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SSMP,YUSUKE,	2	0.978895
FDXR	chr17	72862592	72862593	rs690514	-	C	A/G	single	intron,ncRNA,missense	20	1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EGP_SNPS,EXOME_CHIP,GMI,HGBASE,ILLUMINA,LEE,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,WIAF-CSNP,YUSUKE,	2	0.186529
FDXR	chr17	72869077	72869078	rs492095	-	A	C/T	single	ncRNA,untranslated-5	15	1000GENOMES,ABI,BGI,BUSHMAN,CSHL-HAPMAP,EGP_SNPS,GMI,HGBASE,ILLUMINA,KWOK,KYUGEN,NHLBI-ESP,SC_JCM,SSMP,YUSUKE,	2	0.237435
FDXR	chr17	72869105	72869106	rs35832918	-	A	C/T	single	ncRNA,untranslated-5	5	1000GENOMES,EGP_SNPS,ILLUMINA,NHLBI-ESP,SSMP,	2	0.102865
GCDH	chr19	13002383	13002384	rs3745647	-	T	A/G	single	intron,ncRNA	9	1000GENOMES,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,SSMP,YUSUKE,	2	0.931170
GCDH	chr19	13002399	13002400	rs1799918	+	G	C/G	single	intron,ncRNA	17	1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,CSHL-HAPMAP,DSMART,ENSEMBL,GMI,HGBASE,HGSV,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.247027
GCDH	chr19	13002562	13002563	rs2242517	+	T	G/T	single	intron,ncRNA	15	1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,YUSUKE,	2	0.361694
GCDH	chr19	13002565	13002566	rs76650855	+	G	G/T	single	intron,ncRNA	3	1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,	2	0.961927
GCDH	chr19	13003152	13003152	rs58273148	+	-	-/TG	insertion	intron,ncRNA	4	1000GENOMES,HGSV,LUNTER,TISHKOFF,	2	0.962351
GCDH	chr19	13003238	13003239	rs114415076	+	G	A/G	single	intron,ncRNA	1	1000GENOMES,	2	0.011760
GCDH	chr19	13008606	13008607	rs1060218	+	G	G/T	single	coding-synon,ncRNA	22	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CGAP-GAI,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SEQUENOM,SI_EXO,SSMP,TISHKOFF,WICVAR,	2	0.731857
GCDH	chr19	13010515	13010516	rs113720193	+	G	A/G	single	intron,ncRNA,missense,untranslated-3	7	1000GENOMES,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF,	2	0.016030
GCDH	chr19	13010519	13010520	rs8012	+	A	A/G	single	intron,ncRNA,missense,untranslated-3	25	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	3	0.293339
GCDH	chr19	13010642	13010643	rs9384	+	G	G/T	single	intron,ncRNA,untranslated-3	17	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CGAP-GAI,ENSEMBL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE,	2	0.731968
ACP1	chr2	264878	264879	rs111341344	+	C	A/C	single	near-gene-5,ncRNA,untranslated-5	2	1000GENOMES,COMPLETE_GENOMICS,	2	0.018349
ACP1	chr2	264984	264985	rs11691572	+	G	G/T	single	near-gene-5,ncRNA,missense	9	1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,ILLUMINA,NHLBI-ESP,	2	0.989735
ACP1	chr2	272050	272051	rs11553742	+	C	C/T	single	coding-synon,intron,ncRNA	12	1000GENOMES,ABI,BCM-HGSC-SUB,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,	2	0.963098
ACP1	chr2	272202	272203	rs11553746	+	C	C/T	single	coding-synon,intron,ncRNA,missense	19	1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF,	2	0.738443
ACP1	chr2	277002	277003	rs79716074	+	A	A/G	single	ncRNA,missense	19	1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,OMIM-CURATED-RECORDS,PJP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.725060
ACP1	chr2	277236	277237	rs35569198	-	C	A/G	single	ncRNA,missense	3	APPLERA_GI,ILLUMINA,PERLEGEN,	2	0.026316
ACP1	chr2	277313	277314	rs77927634	+	G	A/G	single	ncRNA,untranslated-3	5	1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,	2	0.024171
ACP1	chr2	277994	277995	rs6855	+	A	A/G	single	ncRNA,untranslated-3	15	1000GENOMES,ABI,AFFY,BL,BUSHMAN,CGAP-GAI,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,PERLEGEN,SSMP,TISHKOFF,	2	0.782556
AGPS	chr2	178257390	178257391	rs113671272	+	G	A/G	single	near-gene-5,ncRNA	5	1000GENOMES,BCM-HGSC-SUB,GMI,SSMP,TISHKOFF,	2	0.152605
ACAD9	chr3	128598469	128598471	rs28384401	+	GT	-/GT	deletion	ncRNA,untranslated-5	10	1000GENOMES,ABI,BUSHMAN,DEVINE_LAB,GMI,KYUGEN,LUNTER,PJP,SSMP,TISHKOFF,	2	0.454170
ACAD9	chr3	128598478	128598480	rs200105043	+	TC	-/TC	deletion	ncRNA,untranslated-5	1	1000GENOMES,	2	0.364096
ACAD9	chr3	128598490	128598490	rs28384402	+	-	-/TAAG	insertion	ncRNA,untranslated-5	5	1000GENOMES,BCMHGSC_JDW,KYUGEN,LUNTER,TISHKOFF,	2	0.947199
ACAD9	chr3	128614184	128614185	rs1680778	+	A	A/C	single	coding-synon,ncRNA	24	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,	3	0.501608
ACAD9	chr3	128618282	128618283	rs1979529	+	T	C/T	single	coding-synon,ncRNA	10	1000GENOMES,BCMHGSC_JDW,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,ILLUMINA,NHLBI-ESP,SSMP,TSC-CSHL,	2	0.028382
ACAD9	chr3	128622921	128622922	rs115532916	+	G	A/C/G	single	ncRNA,missense	6	1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,OMIM-CURATED-RECORDS,	2	0.013100
ACAD9	chr3	128627886	128627887	rs4494951	+	G	A/G	single	ncRNA,missense	11	1000GENOMES,ABI,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,DEVINE_LAB,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,SC_JCM,	2	0.011064

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