Riboflavin SNPS Near Gene 3

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Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Class	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ACADM	chr1	76229786	76229787	rs1146588	-	C	C/G	single	near-gene-3	16	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,	2	0.311375
ACADM	chr1	76253045	76253045	rs3831900	+	-	-/A	insertion	intron,near-gene-3,near-gene-5	9	1000GENOMES,ABI,BUSHMAN,GMI,LUNTER,PJP,SSMP,TISHKOFF,YUSUKE,	2	0.792661
FLAD1	chr1	154961705	154961706	rs2089248	+	A	A/G	single	intron,near-gene-3	15	1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,	2	0.887726
FMO3	chr1	171070471	171070472	rs12404455	+	G	G/T	single	intron,near-gene-3,near-gene-5	9	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,SSMP,TISHKOFF,	2	0.892692
FMO3	chr1	171070795	171070796	rs79111056	+	C	A/C	single	intron,near-gene-3,near-gene-5	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.012385
KDM1A	chr1	23384184	23384185	rs28663624	+	A	A/G	single	intron,near-gene-3	5	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSAHASNP,TISHKOFF,	2	0.984862
KDM1A	chr1	23410074	23410074	rs139522271	+	-	-/AAAG	insertion	near-gene-3,untranslated-3	2	1000GENOMES,LUNTER,	2	0.988981
KDM1A	chr1	23410137	23410138	rs12137204	+	T	G/T	single	near-gene-3,untranslated-3	11	ABI,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SC_SNP,SSAHASNP,	2	0.818182
KDM1A	chr1	23410139	23410140	rs12139776	+	G	G/T	single	near-gene-3,untranslated-3	14	1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,SC_SNP,SI_EXO,SSAHASNP,	2	0.153846
KDM1A	chr1	23410139	23410140	rs201520274	+	G	-/G	deletion	near-gene-3,untranslated-3	1	1000GENOMES,	2	0.788338
MTHFR	chr1	11849666	11849667	rs45574135	-	C	A/G	single	near-gene-3,untranslated-3	1	EGP_SNPS,	2	0.011628
PPOX	chr1	161141431	161141432	rs6779	-	C	C/G	single	near-gene-3,untranslated-3	17	1000GENOMES,BCM-HGSC-SUB,BGI,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,LEE,PERLEGEN,PJP,SI_EXO,SSMP,TISHKOFF,UWGC,YUSUKE,	2	0.271121
ACP2	chr11	47261070	47261071	rs4640	-	C	A/G	single	near-gene-3,untranslated-3	12	1000GENOMES,AFFY,CGAP-GAI,EGP_SNPS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,PERLEGEN,SSMP,TISHKOFF,UWGC,	2	0.042260
ACP2	chr11	47261094	47261097	rs138812797	+	ACA	-/ACA	deletion	near-gene-3,cds-indel	2	1000GENOMES,LUNTER,	2	0.011478
ACP2	chr11	47261096	47261099	rs4647763	+	AAC	-/AAC	deletion	near-gene-3,cds-indel	3	EGP_SNPS,ILLUMINA,TISHKOFF,	2	0.020000
ACP2	chr11	47261259	47261260	rs11988	-	G	C/T	single	near-gene-3,untranslated-3	15	1000GENOMES,ABI,CGAP-GAI,EGP_SNPS,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,LEE,PJP,SC_SNP,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,	2	0.821457
ACP2	chr11	47266761	47266762	rs11039146	+	G	A/G	single	intron,near-gene-3	6	1000GENOMES,ILLUMINA,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF,	2	0.033486
ACP2	chr11	47266807	47266808	rs2242261	-	T	A/C	single	intron,near-gene-3	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.639616
NDUFV1	chr11	67377786	67377787	rs111907965	+	C	C/T	single	intron,near-gene-3	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.983035
NDUFV1	chr11	67377808	67377819	rs111437532	+	TGGGCTGGGGG	-/TGGGCTGGGGG	deletion	intron,near-gene-3	3	1000GENOMES,BUSHMAN,LUNTER,	2	0.037156
NDUFV1	chr11	67377889	67377890	rs10896187	+	C	C/G	single	coding-synon,near-gene-3	7	1000GENOMES,BUSHMAN,CGAP-GAI,ILLUMINA,NHLBI-ESP,SC_SNP,TISHKOFF,	2	0.950810
NDUFV1	chr11	67378228	67378229	rs3016861	+	T	G/T	single	intron,near-gene-3	19	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.957967
COQ6	chr14	74429847	74429848	rs72627142	+	G	C/G	single	near-gene-3	5	1000GENOMES,BGI,GMI,SSMP,TISHKOFF,	2	0.155215
COQ6	chr14	74429982	74429983	rs116563548	+	C	C/T	single	near-gene-3	2	1000GENOMES,TISHKOFF,	2	0.984756
L2HGDH	chr14	50708868	50708869	rs4901001	+	C	C/T	single	near-gene-3	8	1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP,WI_SSAHASNP,	2	0.743813
ETFA	chr15	76508565	76508569	rs143535013	+	AAAT	-/AAAT	deletion	near-gene-3	4	1000GENOMES,GMI,LUNTER,SSMP,	2	0.113407
IVD	chr15	40713773	40713774	rs1001528	-	A	C/T	single	near-gene-3	22	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	3	0.508955
IVD	chr15	40713848	40713849	rs12914710	+	G	A/G	single	near-gene-3	18	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.600384
IVD	chr15	40713877	40713878	rs12914315	+	A	A/G	single	near-gene-3	18	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.363359
ACADVL	chr17	7126144	7126145	rs8064573	+	G	A/G	single	coding-synon,near-gene-3	11	1000GENOMES,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,GENEREVIEWS,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,TISHKOFF,WI_SSAHASNP,	2	0.027577
GCDH	chr19	13009756	13009757	rs147556113	+	A	A/G	single	intron,near-gene-3	2	1000GENOMES,TISHKOFF,	2	0.987603
GCDH	chr19	13009761	13009762	rs115681337	+	T	A/T	single	intron,near-gene-3	2	1000GENOMES,TISHKOFF,	2	0.032230
ACP1	chr2	272839	272840	rs12714401	+	G	A/G	single	intron,near-gene-3	16	1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WUGSC_SSAHASNP,	2	0.617011
ACP1	chr2	272925	272926	rs12714402	+	A	A/G	single	intron,near-gene-3	19	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP,	2	0.380073
CYB5R3	chr22	43035343	43035344	rs201181275	+	T	-/T	deletion	intron,near-gene-3	1	1000GENOMES,	2	0.627640
CYB5R3	chr22	43035346	43035346	rs201722897	+	-	-/C	insertion	intron,near-gene-3	2	1000GENOMES,TISHKOFF,	2	0.708907
CYB5R3	chr22	43035370	43035371	rs139626388	+	C	C/T	single	intron,near-gene-3	1	1000GENOMES,	2	0.980716
CYB5R3	chr22	43035409	43035410	rs137140	+	A	A/G	single	intron,near-gene-3	18	1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.059361
CYB5R3	chr22	43035414	43035415	rs7287830	+	C	C/T	single	intron,near-gene-3	7	1000GENOMES,BCM_SSAHASNP,BUSHMAN,GMI,HGSV,SSMP,TISHKOFF,	2	0.739569
CYB5R3	chr22	43035581	43035582	rs12329980	+	C	C/T	single	intron,near-gene-3	3	1000GENOMES,SC_SNP,TISHKOFF,	2	0.986685
CYB5R3	chr22	43035792	43035793	rs5751318	+	G	C/G	single	intron,near-gene-3	14	1000GENOMES,AFFY,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.343750
ACAD9	chr3	128628722	128628723	rs75330990	+	A	A/G	single	intron,near-gene-3	3	1000GENOMES,ILLUMINA,TISHKOFF,	2	0.984769
ACAD9	chr3	128628808	128628809	rs6797917	+	A	A/G	single	intron,near-gene-3	8	1000GENOMES,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,ENSEMBL,ILLUMINA,SSMP,	2	0.954189
ACAD9	chr3	128632051	128632052	rs16852231	+	C	C/T	single	intron,near-gene-3	9	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.906690
ACAD9	chr3	128632320	128632320	rs146809759	+	-	-/TACACCAGGTCCC	insertion	intron,near-gene-3	2	1000GENOMES,LUNTER,	2	0.891644
ACAD9	chr3	128632453	128632454	rs6790721	+	A	A/G	single	intron,near-gene-3	9	1000GENOMES,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,	2	0.927011
ETFDH	chr4	159629813	159629814	rs17843966	-	A	G/T	single	near-gene-3,untranslated-3	8	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,SSMP,	2	0.172070
ETFDH	chr4	159630080	159630081	rs11934134	+	G	G/T	single	near-gene-3	8	1000GENOMES,ABI,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.986152
ETFDH	chr4	159630145	159630146	rs35381165	+	G	A/G	single	near-gene-3	5	1000GENOMES,ABI,ENSEMBL,ILLUMINA-UK,TISHKOFF,	2	0.016499
ETFDH	chr4	159630173	159630173	rs71988837	+	-	-/GTGTGTGT/TT	insertion	near-gene-3	2	1000GENOMES,DEVINE_LAB,	2	0.982094

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