Riboflavin ncRNA Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Class	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ACAD9	chr3	128627932	128627933	rs876755	+	C	C/T	single	coding-synon,ncRNA	24	1000GENOMES,ABI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE,	2	0.722999
ACAD9	chr3	128631480	128631481	rs9830739	+	G	A/G	single	intron,ncRNA,untranslated-3	13	1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PJP,TISHKOFF,	2	0.072926
ACAD9	chr3	128631517	128631518	rs116106966	+	C	C/T	single	intron,ncRNA,untranslated-3	4	1000GENOMES,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,	2	0.986624
ACAD9	chr3	128631672	128631674	rs146518015	+	GA	-/GA	deletion	intron,ncRNA,untranslated-3	2	1000GENOMES,LUNTER,	2	0.033058
ACAD9	chr3	128631780	128631781	rs114763241	+	T	G/T	single	intron,ncRNA,untranslated-3	2	1000GENOMES,ILLUMINA,	2	0.013937
ETFDH	chr4	159593369	159593370	rs113981461	+	G	A/G	single	near-gene-5,ncRNA,untranslated-5	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.017431
MTRR	chr5	7859433	7859434	rs1046014	-	T	A/G	single	ncRNA,untranslated-3	15	1000GENOMES,BCM_SSAHASNP,BL,CGAP-GAI,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,TISHKOFF,	2	0.787087
MTRR	chr5	7859522	7859523	rs1046012	-	A	C/T	single	ncRNA,untranslated-3	18	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.217371
SLC25A32	chr8	104410927	104410928	rs1061196	-	C	A/G	single	ncRNA,untranslated-3	14	1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,LEE,PERLEGEN,PJP,SSMP,WI_SSAHASNP,	2	0.190239
SLC25A32	chr8	104411057	104411058	rs12546452	+	A	A/C	single	ncRNA,untranslated-3	5	1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,SSMP,	2	0.982585
SLC25A32	chr8	104411076	104411081	rs111398011	+	ATAAG	-/ATAAG	deletion	ncRNA,untranslated-3	6	1000GENOMES,BILGI_BIOE,BUSHMAN,GMI,LUNTER,SSMP,	2	0.173853
SLC25A32	chr8	104411281	104411282	rs1061195	-	T	A/G	single	ncRNA,untranslated-3	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,LEE,PERLEGEN,PJP,SC_JCM,SSMP,	2	0.733364
SLC25A32	chr8	104412150	104412151	rs148028640	+	A	A/T	single	ncRNA,untranslated-3	2	1000GENOMES,ILLUMINA,	2	0.986685
SLC25A32	chr8	104412387	104412388	rs2241777	+	C	A/C	single	ncRNA,untranslated-3	23	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.455525
SLC25A32	chr8	104412474	104412475	rs11345830	+	A	-/A	deletion	ncRNA,untranslated-3	13	1000GENOMES,BGI,BILGI_BIOE,BL,BUSHMAN,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,	2	1.000000
SLC25A32	chr8	104412516	104412517	rs35225263	+	A	A/T	single	ncRNA,untranslated-3	12	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF,	2	0.824171
SLC25A32	chr8	104412634	104412635	rs74934875	+	G	A/G	single	ncRNA,untranslated-3	4	1000GENOMES,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,	2	0.014779
SLC25A32	chr8	104417044	104417045	rs17803441	+	C	C/T	single	intron,ncRNA,missense	9	1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,	2	0.952397
SLC25A32	chr8	104427358	104427359	rs3134295	+	A	A/C	single	ncRNA,missense,untranslated-5	25	1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,KYUGEN,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.537010
SLC52A2	chr8	145582247	145582248	rs144713518	+	G	A/G	single	near-gene-5,ncRNA,untranslated-5	1	1000GENOMES,	2	0.012397
SLC52A2	chr8	145582293	145582294	rs115940535	+	C	A/C	single	intron,near-gene-5,ncRNA,untranslated-5	1	1000GENOMES,	2	0.030923
SLC52A2	chr8	145584693	145584694	rs34383175	+	C	C/T	single	ncRNA,untranslated-3	7	1000GENOMES,ABI,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,PJP,	2	0.983960
SLC52A2	chr8	145584730	145584731	rs11546261	+	A	A/G	single	ncRNA,untranslated-3	3	1000GENOMES,CGAP-GAI,ILLUMINA,	2	0.975196
SLC52A2	chr8	145577898	145577899	rs116055973	+	C	C/T	single	intron,ncRNA,missense	2	1000GENOMES,TISHKOFF,	2	0.982578
SLC52A2	chr8	145578295	145578296	rs2272663	-	A	C/T	single	coding-synon,ncRNA	16	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,WI_SSAHASNP,YUSUKE,	2	0.549065

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