Gene Symbol | Chromosome | Start | End | rs ID | Strand | NCBI ref | Observed | Class | Function | Submitter Count | Submitter | Frequency Count | Allele Frequency |
---|
ACOX1 | chr17 | 73944456 | 73944457 | rs35105560 | + | C | C/T | single | missense | 1 | APPLERA_GI, | 2 | 0.987179 |
ACOX1 | chr17 | 73944495 | 73944496 | rs35629489 | + | G | A/G | single | missense | 9 | 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF, | 2 | 0.010675 |
ACOX1 | chr17 | 73949539 | 73949540 | rs1135640 | - | G | C/G | single | missense | 30 | 1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,WUGSC_SSAHASNP, | 2 | 0.476613 |
ACOX1 | chr17 | 73969834 | 73969835 | rs3744032 | + | C | C/T | single | intron,missense | 15 | 1000GENOMES,AFFY,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, | 2 | 0.939938 |
FDXR | chr17 | 72860652 | 72860653 | rs34038065 | - | G | C/T | single | ncRNA,missense | 10 | 1000GENOMES,CLINSEQ_SNP,CORNELL,EGP_SNPS,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, | 2 | 0.976671 |
FDXR | chr17 | 72861056 | 72861057 | rs35102176 | - | G | C/G | single | intron,missense | 7 | 1000GENOMES,BUSHMAN,EGP_SNPS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, | 2 | 0.983936 |
FDXR | chr17 | 72862592 | 72862593 | rs690514 | - | C | A/G | single | intron,ncRNA,missense | 20 | 1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EGP_SNPS,EXOME_CHIP,GMI,HGBASE,ILLUMINA,LEE,NHLBI-ESP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,WIAF-CSNP,YUSUKE, | 2 | 0.186529 |
FDXR | chr17 | 72863029 | 72863030 | rs1688149 | - | T | A/G | single | intron,missense | 12 | 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,NHLBI-ESP,SC_JCM,SSMP,TISHKOFF, | 2 | 0.781250 |
PNPO | chr17 | 46022064 | 46022065 | rs17679445 | + | G | A/G | single | missense | 9 | 1000GENOMES,AFFY,CLINSEQ_SNP,CORNELL,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN, | 2 | 0.044352 |
SLC52A1 | chr17 | 4936897 | 4936898 | rs2304445 | - | C | A/G | single | missense | 17 | 1000GENOMES,ABI,BGI,BUSHMAN,CLINSEQ_SNP,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PJP,SEATTLESEQ,SSMP,TISHKOFF,YUSUKE, | 2 | 0.217189 |
SLC52A1 | chr17 | 4936971 | 4936972 | rs346821 | + | G | A/G | single | missense | 25 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KWOK,MGC_GENOME_DIFF,NHLBI-ESP,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, | 2 | 0.643869 |
SLC52A1 | chr17 | 4937574 | 4937575 | rs346822 | - | T | A/G | single | missense | 27 | 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KWOK,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.058377 |
NDUFV2 | chr18 | 9117866 | 9117867 | rs906807 | - | T | A/G | single | missense | 27 | 1000GENOMES,ABI,AFFY,APPLERA_GI,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,PERLEGEN,PJP,RIKENSNPRC,SEATTLESEQ,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.209829 |
NDUFV2 | chr18 | 9122610 | 9122611 | rs72935225 | + | T | C/T | single | missense | 6 | BL,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,SEATTLESEQ, | 2 | 0.091670 |
ACP5 | chr19 | 11687131 | 11687132 | rs2229532 | - | C | A/G | single | missense | 12 | 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,TISHKOFF,WICVAR, | 2 | 0.038484 |
ACP5 | chr19 | 11687194 | 11687195 | rs2229531 | - | C | A/G | single | missense | 12 | 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,WICVAR,YUSUKE, | 2 | 0.075470 |
ACP5 | chr19 | 11687350 | 11687351 | rs2305799 | + | C | C/T | single | missense | 13 | 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,SI_EXO,SSMP,TISHKOFF,YUSUKE, | 2 | 0.907794 |
ETFB | chr19 | 51850289 | 51850290 | rs1130426 | - | G | A/C/G/T | single | missense | 26 | 1000GENOMES,AFFY,APPLERA_GI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SEQUENOM,SSAHASNP,SSMP,TISHKOFF,WICVAR,WI_SSAHASNP, | 4 | 0.000103 |
ETFB | chr19 | 51857737 | 51857738 | rs79338777 | + | G | A/G | single | intron,missense | 9 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.063373 |
GCDH | chr19 | 13010515 | 13010516 | rs113720193 | + | G | A/G | single | intron,ncRNA,missense,untranslated-3 | 7 | 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, | 2 | 0.016030 |
GCDH | chr19 | 13010519 | 13010520 | rs8012 | + | A | A/G | single | intron,ncRNA,missense,untranslated-3 | 25 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, | 3 | 0.293339 |
ACP1 | chr2 | 264984 | 264985 | rs11691572 | + | G | G/T | single | near-gene-5,ncRNA,missense | 9 | 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,ILLUMINA,NHLBI-ESP, | 2 | 0.989735 |
ACP1 | chr2 | 272202 | 272203 | rs11553746 | + | C | C/T | single | coding-synon,intron,ncRNA,missense | 19 | 1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.738443 |
ACP1 | chr2 | 277002 | 277003 | rs79716074 | + | A | A/G | single | ncRNA,missense | 19 | 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,OMIM-CURATED-RECORDS,PJP,SEATTLESEQ,SEQUENOM,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.725060 |
ACP1 | chr2 | 277236 | 277237 | rs35569198 | - | C | A/G | single | ncRNA,missense | 3 | APPLERA_GI,ILLUMINA,PERLEGEN, | 2 | 0.026316 |
D2HGDH | chr2 | 242674681 | 242674682 | rs4675887 | - | C | C/G | single | missense | 4 | 1000GENOMES,EXOME_CHIP,SSMP,WI_SSAHASNP, | 2 | 0.037190 |
D2HGDH | chr2 | 242674802 | 242674803 | rs77940364 | + | G | A/G | single | missense | 8 | 1000GENOMES,BGI,BL,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SSMP, | 2 | 0.214534 |
D2HGDH | chr2 | 242690674 | 242690675 | rs1106639 | + | G | A/G | single | missense | 12 | 1000GENOMES,APPLERA_GI,BGI,BL,COMPLETE_GENOMICS,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.258387 |
D2HGDH | chr2 | 242690728 | 242690729 | rs144668507 | + | C | C/T | single | missense | 5 | 1000GENOMES,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, | 2 | 0.976779 |
D2HGDH | chr2 | 242690744 | 242690745 | rs1105273 | + | C | C/T | single | missense | 11 | 1000GENOMES,APPLERA_GI,BUSHMAN,COMPLETE_GENOMICS,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.817032 |
XDH | chr2 | 31560571 | 31560572 | rs45564939 | - | G | C/T | single | missense | 6 | 1000GENOMES,CLINSEQ_SNP,EGP_SNPS,EXOME_CHIP,ILLUMINA,NHLBI-ESP, | 2 | 0.989163 |
XDH | chr2 | 31560616 | 31560617 | rs181743036 | + | C | C/T | single | missense | 1 | 1000GENOMES, | 2 | 0.975666 |
XDH | chr2 | 31569659 | 31569660 | rs45547640 | - | T | A/C | single | missense | 5 | 1000GENOMES,EGP_SNPS,EXOME_CHIP,GMI,ILLUMINA, | 2 | 0.989380 |
XDH | chr2 | 31570392 | 31570393 | rs45619033 | - | C | C/G | single | missense | 8 | 1000GENOMES,CORNELL,EGP_SNPS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PHARMGKB_AB_DME,SNP500CANCER, | 2 | 0.012859 |
XDH | chr2 | 31590916 | 31590917 | rs17011368 | + | T | C/T | single | missense | 18 | 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EGP_SNPS,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,SEATTLESEQ,SI_EXO,SNP500CANCER,SSMP,TISHKOFF, | 2 | 0.058112 |
XDH | chr2 | 31593264 | 31593265 | rs17323225 | + | T | C/T | single | missense | 13 | 1000GENOMES,AFFY,APPLERA_GI,CLINSEQ_SNP,EGP_SNPS,EXOME_CHIP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,SSMP, | 2 | 0.022365 |
XDH | chr2 | 31595148 | 31595149 | rs61731081 | + | C | C/T | single | missense | 2 | AFFY_DM3_1,CORNELL, | 2 | 0.985714 |
XDH | chr2 | 31602790 | 31602791 | rs34929837 | - | T | A/T | single | missense | 10 | 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EGP_SNPS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,SNP500CANCER, | 2 | 0.981743 |
XDH | chr2 | 31611142 | 31611143 | rs45523133 | - | C | A/G | single | missense | 10 | 1000GENOMES,BUSHMAN,CLINSEQ_SNP,EGP_SNPS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.028118 |
SLC52A3 | chr20 | 744166 | 744167 | rs76947760 | + | A | A/T | single | missense | 6 | 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ, | 2 | 0.979486 |
SLC52A3 | chr20 | 744307 | 744308 | rs3746802 | + | T | C/T | single | missense | 22 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.098919 |
SLC52A3 | chr20 | 744381 | 744382 | rs3746803 | + | G | A/G | single | missense | 23 | 1000GENOMES,ABI,AFFY,APPLERA_GI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 3 | 0.096882 |
SLC52A3 | chr20 | 744414 | 744415 | rs3746804 | + | G | A/G | single | missense | 25 | 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.205550 |
SLC52A3 | chr20 | 745897 | 745898 | rs6054614 | + | T | C/T | single | missense | 10 | 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,TISHKOFF, | 2 | 0.013094 |
SLC52A3 | chr20 | 746196 | 746197 | rs35655964 | - | G | C/G | single | missense | 9 | 1000GENOMES,APPLERA_GI,COMPLETE_GENOMICS,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, | 2 | 0.942274 |
CYB5R3 | chr22 | 43023647 | 43023648 | rs61743717 | + | C | A/C | single | missense | 1 | CORNELL, | 2 | 0.013513 |
CYB5R3 | chr22 | 43024270 | 43024271 | rs1800457 | - | G | C/G | single | missense | 15 | 1000GENOMES,ABI,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,EGP_SNPS,EXOME_CHIP,HGBASE,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,OMIM-CURATED-RECORDS,PERLEGEN,SEATTLESEQ,TISHKOFF, | 2 | 0.907836 |
CYB5R3 | chr22 | 43040433 | 43040434 | rs8190407 | - | G | C/G | single | intron,missense | 9 | 1000GENOMES,AFFY,EGP_SNPS,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF, | 2 | 0.978081 |
PRODH | chr22 | 18901003 | 18901004 | rs450046 | + | C | C/T | single | missense | 33 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,PERLEGEN,PJP,SC_JCM,SC_SNP,SEATTLESEQ,SEQUENOM,SI_EXO,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.101300 |
PRODH | chr22 | 18905841 | 18905842 | rs2870983 | + | C | C/T | single | missense | 7 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,NHLBI-ESP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.953161 |
PRODH | chr22 | 18905898 | 18905899 | rs3970559 | + | G | A/G | single | missense | 10 | 1000GENOMES,BCM_SSAHASNP,CLINSEQ_SNP,EXOME_CHIP,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,SC_SNP,SSMP,TSC-CSHL, | 2 | 0.011183 |
PRODH | chr22 | 18905963 | 18905964 | rs2904552 | + | C | C/T | single | missense | 13 | 1000GENOMES,ABI,CLINSEQ_SNP,ENSEMBL,EXOME_CHIP,HUMANGENOME_JCVI,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,PJP,SSAHASNP,TISHKOFF,TSC-CSHL, | 2 | 0.929709 |
PRODH | chr22 | 18905976 | 18905977 | rs2238731 | + | C | C/T | single | missense | 9 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,NHLBI-ESP,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE, | 2 | 0.955779 |
PRODH | chr22 | 18910354 | 18910355 | rs5747933 | + | G | G/T | single | missense | 8 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP, | 2 | 0.950928 |
PRODH | chr22 | 18912676 | 18912677 | rs11913840 | + | C | C/T | single | missense | 6 | 1000GENOMES,CLINSEQ_SNP,CSHL-HAPMAP,EXOME_CHIP,NHLBI-ESP,SSMP, | 2 | 0.945209 |
PRODH | chr22 | 18923628 | 18923629 | rs146648839 | + | C | C/T | single | intron,missense | 3 | 1000GENOMES,EXOME_CHIP,NHLBI-ESP, | 2 | 0.960514 |
PRODH | chr22 | 18923712 | 18923713 | rs3815655 | + | G | A/G | single | intron,missense | 6 | 1000GENOMES,COMPLETE_GENOMICS,EXOME_CHIP,HGSV,SSMP,YUSUKE, | 2 | 0.125229 |
PRODH | chr22 | 18923744 | 18923745 | rs2008720 | - | G | A/C | single | intron,missense | 16 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,CSHL-HAPMAP,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SEQUENOM,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHASNP,YUSUKE, | 2 | 0.543462 |
TXNRD2 | chr22 | 19868217 | 19868218 | rs1139793 | + | A | A/G | single | missense | 31 | 1000GENOMES,AFFY,AFFY_GWHS,APPLERA_GI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,LEE,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,YUSUKE, | 5 | 0.247231 |
TXNRD2 | chr22 | 19870897 | 19870898 | rs61736941 | + | G | A/G | single | missense | 2 | CORNELL,NHLBI-ESP, | 2 | 0.013513 |
TXNRD2 | chr22 | 19882983 | 19882984 | rs5992495 | + | T | G/T | single | missense | 20 | 1000GENOMES,ABI,AFFY,BUSHMAN,CLINSEQ_SNP,CORNELL,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.232925 |
TXNRD2 | chr22 | 19903289 | 19903290 | rs61736929 | + | C | C/G | single | missense | 9 | 1000GENOMES,CLINSEQ_SNP,CORNELL,EXOME_CHIP,GOLDSTEINLAB,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF, | 2 | 0.963597 |
TXNRD2 | chr22 | 19907098 | 19907099 | rs5748469 | + | C | A/C | single | missense | 20 | 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,EXOME_CHIP,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_SNP,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.463202 |
ACAD9 | chr3 | 128622921 | 128622922 | rs115532916 | + | G | A/C/G | single | ncRNA,missense | 6 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,OMIM-CURATED-RECORDS, | 2 | 0.013100 |
ACAD9 | chr3 | 128627886 | 128627887 | rs4494951 | + | G | A/G | single | ncRNA,missense | 11 | 1000GENOMES,ABI,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,DEVINE_LAB,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,SC_JCM, | 2 | 0.011064 |
ACAD9 | chr3 | 128634036 | 128634037 | rs113633667 | + | C | C/T | single | missense | 4 | 1000GENOMES,CLINSEQ_SNP,COMPLETE_GENOMICS,ILLUMINA, | 2 | 0.989467 |
ETFDH | chr4 | 159601675 | 159601676 | rs11559290 | + | C | C/T | single | missense | 26 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.323065 |
MTRR | chr5 | 7866820 | 7866821 | rs16879259 | + | T | C/T | single | intron,missense | 13 | 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.065686 |
MTRR | chr5 | 7868029 | 7868030 | rs2966952 | + | T | C/T | single | intron,near-gene-5,missense | 27 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.834742 |
MTRR | chr5 | 7870972 | 7870973 | rs1801394 | + | A | A/G | single | near-gene-5,missense | 29 | 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,KYUGEN,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,PHARMGKB_PPII,PJP,SEATTLESEQ,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,YUSUKE, | 2 | 0.572342 |
MTRR | chr5 | 7878178 | 7878179 | rs1532268 | - | C | A/G | single | missense | 27 | 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SEATTLESEQ,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, | 2 | 0.295599 |
MTRR | chr5 | 7878423 | 7878424 | rs2303080 | + | T | A/T | single | missense | 13 | 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,HGSV,ILLUMINA,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SEATTLESEQ,SSMP,YUSUKE, | 2 | 0.030610 |
MTRR | chr5 | 7885906 | 7885907 | rs10064631 | + | C | C/G | single | missense | 12 | 1000GENOMES,BUSHMAN,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,SEATTLESEQ,TISHKOFF,WI_SSAHASNP, | 2 | 0.947887 |
MTRR | chr5 | 7885958 | 7885959 | rs162036 | + | A | A/G | single | missense | 23 | 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.774035 |
MTRR | chr5 | 7889303 | 7889304 | rs2287780 | + | C | C/T | single | missense | 16 | 1000GENOMES,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,SEATTLESEQ,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,YUSUKE, | 2 | 0.950050 |
MTRR | chr5 | 7891505 | 7891506 | rs16879334 | + | C | C/G | single | missense | 11 | 1000GENOMES,AFFY,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SSMP,TISHKOFF, | 2 | 0.956700 |
MTRR | chr5 | 7897190 | 7897191 | rs10380 | + | C | C/T | single | missense | 25 | 1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SEATTLESEQ,SEQUENOM,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,YUSUKE, | 2 | 0.811339 |
SDHA | chr5 | 223629 | 223630 | rs1061518 | + | T | G/T | single | missense | 1 | LEE, | 2 | 0.100000 |
SDHA | chr5 | 223645 | 223646 | rs34635677 | + | A | A/T | single | missense | 7 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,LARRIBA,NHLBI-ESP,SI_EXO, | 2 | 0.967633 |
SDHA | chr5 | 233692 | 233693 | rs1062468 | + | G | A/G | single | missense | 2 | LEE,SEQUENOM, | 2 | 0.120000 |
SDHA | chr5 | 236618 | 236619 | rs201741295 | + | T | C/T | single | missense | 1 | CLINSEQ_SNP, | 2 | 0.015500 |
SDHA | chr5 | 236627 | 236628 | rs201139275 | + | C | C/T | single | missense | 2 | CLINSEQ_SNP,EXOME_CHIP, | 2 | 0.962500 |
SDHA | chr5 | 236648 | 236649 | rs76896145 | + | C | C/T | single | missense | 4 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,GMI, | 2 | 0.888782 |
SDHA | chr5 | 236675 | 236676 | rs138277996 | + | G | A/G | single | missense | 3 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP, | 2 | 0.071620 |
SDHA | chr5 | 236677 | 236678 | rs111387770 | + | G | A/G | single | missense | 5 | 1000GENOMES,BCM-HGSC-SUB,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA, | 2 | 0.122482 |
SDHA | chr5 | 254511 | 254512 | rs1126568 | + | G | A/G | single | missense | 3 | 1000GENOMES,LEE,SEQUENOM, | 2 | 0.014233 |
SDHA | chr5 | 254598 | 254599 | rs6960 | + | A | A/T | single | missense | 9 | BCMHGSC_JDW,BCM_SSAHASNP,CGAP-GAI,CLINSEQ_SNP,EXOME_CHIP,LEE,NHLBI-ESP,SSMP,WI_SSAHASNP, | 2 | 0.864915 |
SDHA | chr5 | 256508 | 256509 | rs6962 | + | G | A/G | single | missense | 19 | 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,HGSV,ILLUMINA,LARRIBA,LEE,NHLBI-ESP,PJP,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.177438 |
ENPP1 | chr6 | 132129362 | 132129363 | rs200362492 | + | C | A/C | single | missense | 1 | 1000GENOMES, | 2 | 0.046832 |
ENPP1 | chr6 | 132172367 | 132172368 | rs1044498 | + | A | A/C | single | missense | 32 | 1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,HGBASE,IBARROSO,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,LEE,NHLBI-ESP,OMICIA,OMIM-CURATED-RECORDS,PERLEGEN,PJP,SC_SNP,SEATTLESEQ,SHGC,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.654913 |
ENPP1 | chr6 | 132198238 | 132198239 | rs79079368 | + | C | C/G | single | missense | 7 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SSMP,TISHKOFF, | 2 | 0.986298 |
ENPP1 | chr6 | 132201075 | 132201076 | rs115371819 | + | G | A/G | single | missense | 6 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,TISHKOFF, | 2 | 0.013580 |
ENPP1 | chr6 | 132206078 | 132206079 | rs28933977 | + | C | C/T | single | missense | 9 | 1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,OMIM-CURATED-RECORDS,PERLEGEN,SSMP, | 2 | 0.975029 |
ENPP3 | chr6 | 132030136 | 132030137 | rs200752094 | + | T | A/T | single | intron,missense | 1 | CLINSEQ_SNP, | 2 | 0.011500 |
ENPP3 | chr6 | 132030559 | 132030560 | rs200750273 | + | G | A/G | single | intron,missense | 3 | CLINSEQ_SNP,EXOME_CHIP,GMI, | 2 | 0.065065 |
ENPP3 | chr6 | 132030965 | 132030966 | rs202051647 | + | G | C/G | single | intron,missense | 4 | CLINSEQ_SNP,EXOME_CHIP,GMI,SSMP, | 2 | 0.095500 |
ENPP3 | chr6 | 132031140 | 132031141 | rs202093315 | + | A | A/C | single | intron,missense | 1 | CLINSEQ_SNP, | 2 | 0.986500 |
ENPP3 | chr6 | 132045179 | 132045180 | rs58038770 | + | A | A/G | single | missense | 8 | 1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ, | 2 | 0.987960 |
ENPP3 | chr6 | 132047244 | 132047245 | rs9321309 | + | G | A/G | single | missense | 13 | 1000GENOMES,AFFY,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.022033 |
ENPP3 | chr6 | 132058567 | 132058568 | rs77610153 | + | C | C/G | single | missense | 4 | 1000GENOMES,EXOME_CHIP,ILLUMINA,NHLBI-ESP, | 2 | 0.984903 |