Gene Symbol | Chromosome | Start | End | rs ID | Strand | NCBI ref | Observed | Class | Function | Submitter Count | Submitter | Frequency Count | Allele Frequency |
---|
DHCR | chr1 | 55337379 | 55337380 | rs2303535 | + | A | A/G | single | intron | 10 | 1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE, | 2 | 0.932611 |
DHCR | chr1 | 55337445 | 55337446 | rs12119804 | + | T | C/T | single | intron | 7 | 1000GENOMES,BL,COMPLETE_GENOMICS,GMI,SC_SNP,SSMP,TISHKOFF, | 2 | 0.091743 |
DHCR | chr1 | 55337806 | 55337813 | rs140292451 | + | ACAAGTA | -/ACAAGTA | deletion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.019743 |
DHCR | chr1 | 55337815 | 55337816 | rs1002778 | + | G | A/G/T | single | intron | 6 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.942202 |
DHCR | chr1 | 55337884 | 55337885 | rs57782388 | + | A | A/G | single | intron | 5 | 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,SSMP, | 2 | 0.957837 |
DHCR | chr1 | 55338237 | 55338238 | rs57697055 | + | C | C/T | single | intron | 4 | 1000GENOMES,GMI,HGSV,SSMP, | 2 | 0.950392 |
DHCR | chr1 | 55338415 | 55338416 | rs149796574 | + | C | C/T | single | intron | 2 | 1000GENOMES,ILLUMINA, | 2 | 0.987144 |
DHCR | chr1 | 55338678 | 55338679 | rs7551288 | + | A | A/G | single | intron | 18 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.653407 |
DHCR | chr1 | 55338960 | 55338963 | rs147168531 | + | AAC | -/AAC | deletion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.011019 |
DHCR | chr1 | 55338963 | 55338964 | rs76716074 | + | A | A/G | single | intron | 5 | 1000GENOMES,BGI,GMI,ILLUMINA,SSMP, | 2 | 0.947199 |
DHCR | chr1 | 55339085 | 55339086 | rs6686859 | + | C | C/T | single | intron | 16 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, | 2 | 0.710600 |
DHCR | chr1 | 55339132 | 55339133 | rs113793661 | + | A | A/C | single | intron | 4 | 1000GENOMES,BUSHMAN,GMI,SSMP, | 2 | 0.961927 |
DHCR | chr1 | 55339271 | 55339272 | rs35786633 | + | C | C/T | single | intron | 13 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF, | 2 | 0.700687 |
DHCR | chr1 | 55339352 | 55339353 | rs639731 | + | T | C/T | single | intron | 20 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.912489 |
DHCR | chr1 | 55339383 | 55339384 | rs112000395 | + | G | A/G | single | intron | 4 | 1000GENOMES,COMPLETE_GENOMICS,SSMP,TISHKOFF, | 2 | 0.078899 |
DHCR | chr1 | 55339437 | 55339438 | rs597021 | + | G | G/T | single | intron | 19 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.396347 |
DHCR | chr1 | 55339760 | 55339761 | rs75116054 | + | G | C/T | single | intron | 2 | ENSEMBL,GMI, | 2 | 0.200000 |
DHCR | chr1 | 55340182 | 55340183 | rs113493911 | + | T | G/T | single | intron | 4 | 1000GENOMES,BUSHMAN,GMI,SSMP, | 2 | 0.038073 |
DHCR | chr1 | 55340373 | 55340374 | rs79022190 | + | T | A/T | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.043081 |
DHCR | chr1 | 55340380 | 55340381 | rs77830691 | + | C | C/T | single | intron | 2 | 1000GENOMES,ILLUMINA, | 2 | 0.989121 |
DHCR | chr1 | 55340955 | 55340956 | rs2075389 | + | G | C/G | single | intron | 5 | 1000GENOMES,GMI,HGBASE,SSMP,YUSUKE, | 2 | 0.095214 |
DHCR | chr1 | 55341105 | 55341106 | rs2075390 | + | C | C/T | single | intron | 20 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.646154 |
DHCR | chr1 | 55341291 | 55341292 | rs143402560 | + | G | A/G | single | intron | 2 | 1000GENOMES,ILLUMINA, | 2 | 0.012397 |
DHCR | chr1 | 55341350 | 55341351 | rs626452 | + | G | G/T | single | intron | 24 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.398723 |
DHCR | chr1 | 55341392 | 55341393 | rs2075391 | + | A | A/T | single | intron | 5 | 1000GENOMES,GMI,SSMP,TISHKOFF,YUSUKE, | 2 | 0.905694 |
DHCR | chr1 | 55341518 | 55341519 | rs2075392 | + | C | C/T | single | intron | 5 | 1000GENOMES,ILLUMINA,SSMP,TISHKOFF,YUSUKE, | 2 | 0.909656 |
DHCR | chr1 | 55341914 | 55341915 | rs638944 | + | T | G/T | single | intron | 22 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PERLEGEN,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, | 2 | 0.459113 |
DHCR | chr1 | 55341976 | 55341977 | rs72673901 | + | C | C/G | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.983029 |
DHCR | chr1 | 55342051 | 55342052 | rs639796 | + | C | C/T | single | intron | 19 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.478995 |
DHCR | chr1 | 55342485 | 55342486 | rs685004 | + | T | C/T | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.421005 |
DHCR | chr1 | 55342787 | 55342788 | rs12125177 | + | T | A/T | single | intron | 5 | 1000GENOMES,GMI,PJP,SC_SNP,SSMP, | 2 | 0.070061 |
DHCR | chr1 | 55342794 | 55342795 | rs588743 | + | A | A/G | single | intron | 10 | 1000GENOMES,AFFY,GMI,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.952538 |
DHCR | chr1 | 55342928 | 55342929 | rs589244 | + | T | A/T | single | intron | 21 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.488023 |
DHCR | chr1 | 55343036 | 55343042 | rs141082565 | + | ACTTCT | -/ACTTCT | deletion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.072085 |
DHCR | chr1 | 55343114 | 55343115 | rs79801423 | + | T | G/T | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA, | 2 | 0.045872 |
DHCR | chr1 | 55343121 | 55343122 | rs116711878 | + | A | A/C | single | intron | 3 | 1000GENOMES,ILLUMINA,SSMP, | 2 | 0.988251 |
DHCR | chr1 | 55343206 | 55343207 | rs655115 | + | C | C/T | single | intron | 24 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.173418 |
DHCR | chr1 | 55343492 | 55343493 | rs656444 | + | G | A/G | single | intron | 19 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.477646 |
DHCR | chr1 | 55343572 | 55343576 | rs143152143 | + | ACTC | -/ACTC | deletion | intron | 4 | 1000GENOMES,GMI,LUNTER,SSMP, | 2 | 0.040404 |
DHCR | chr1 | 55343865 | 55343865 | rs35447971 | + | - | -/A | insertion | intron | 11 | 1000GENOMES,ABI,BILGI_BIOE,BL,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, | 2 | 0.522936 |
DHCR | chr1 | 55343956 | 55343957 | rs144212524 | + | C | C/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.986226 |
DHCR | chr1 | 55344065 | 55344066 | rs111646050 | + | A | A/T | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,SSMP, | 2 | 0.951835 |
DHCR | chr1 | 55344144 | 55344145 | rs139993736 | + | C | C/T | single | intron | 4 | 1000GENOMES,GMI,SSMP,TISHKOFF, | 2 | 0.955005 |
DHCR | chr1 | 55344482 | 55344483 | rs7553385 | + | A | A/G | single | intron | 6 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.922018 |
DHCR | chr1 | 55344767 | 55344768 | rs607762 | + | A | A/G | single | intron | 21 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.093224 |
DHCR | chr1 | 55344854 | 55344855 | rs4927175 | + | G | A/G | single | intron | 6 | 1000GENOMES,BL,COMPLETE_GENOMICS,GMI,SSMP,WI_SSAHASNP, | 2 | 0.086239 |
DHCR | chr1 | 55345024 | 55345025 | rs13375244 | + | A | A/C/G | single | intron | 4 | 1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,WUGSC_SSAHASNP, | 2 | 0.925229 |
DHCR | chr1 | 55345154 | 55345155 | rs684718 | + | A | A/T | single | intron | 22 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.169160 |
DHCR | chr1 | 55345705 | 55345706 | rs12042996 | + | C | A/C | single | intron | 13 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.299177 |
DHCR | chr1 | 55345836 | 55345837 | rs589895 | + | C | C/T | single | intron | 23 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.092122 |
DHCR | chr1 | 55345864 | 55345865 | rs72903545 | + | G | A/G | single | intron | 4 | 1000GENOMES,BL,COMPLETE_GENOMICS,SSMP, | 2 | 0.086239 |
DHCR | chr1 | 55346187 | 55346188 | rs11206459 | + | A | A/G | single | intron | 14 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.721409 |
DHCR | chr1 | 55346396 | 55346397 | rs635648 | + | C | A/C | single | intron | 4 | 1000GENOMES,KWOK,SC_JCM,SC_SNP, | 2 | 0.017422 |
DHCR | chr1 | 55346424 | 55346425 | rs113814482 | + | T | A/T | single | intron | 4 | 1000GENOMES,COMPLETE_GENOMICS,SSMP,TISHKOFF, | 2 | 0.078899 |
DHCR | chr1 | 55346513 | 55346514 | rs593018 | + | T | C/T | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF, | 2 | 0.479471 |
DHCR | chr1 | 55346563 | 55346564 | rs636222 | + | G | A/G | single | intron | 3 | 1000GENOMES,KWOK,SC_JCM, | 2 | 0.015151 |
DHCR | chr1 | 55346777 | 55346778 | rs142824636 | + | G | A/G | single | intron | 4 | 1000GENOMES,GMI,SSMP,WARNICH_LAB, | 2 | 0.037649 |
DHCR | chr1 | 55347107 | 55347108 | rs12032654 | + | A | A/G | single | intron | 10 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, | 2 | 0.701376 |
DHCR | chr1 | 55347234 | 55347235 | rs666130 | + | A | A/G | single | intron | 17 | 1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,CSHL-HAPMAP,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.510092 |
DHCR | chr1 | 55347324 | 55347325 | rs117181289 | + | A | A/C | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.957354 |
DHCR | chr1 | 55347802 | 55347806 | rs150960999 | + | AAAG | -/AAAG | deletion | intron | 4 | 1000GENOMES,BILGI_BIOE,GMI,LUNTER, | 2 | 0.884298 |
DHCR | chr1 | 55347806 | 55347807 | rs35319903 | + | A | -/A | deletion | intron | 3 | 1000GENOMES,ABI,HUMANGENOME_JCVI, | 2 | 0.860092 |
DHCR | chr1 | 55348125 | 55348126 | rs117523783 | + | T | C/T | single | intron | 3 | 1000GENOMES,SSMP,TISHKOFF, | 2 | 0.010879 |
DHCR | chr1 | 55348190 | 55348191 | rs680922 | + | G | A/G | single | intron | 21 | 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 1.000000 |
DHCR | chr1 | 55348245 | 55348246 | rs61613485 | + | C | A/C | single | intron | 6 | 1000GENOMES,BGI,GMI,HGSV,SSMP,TISHKOFF, | 2 | 0.061909 |
DHCR | chr1 | 55348308 | 55348309 | rs77668549 | + | A | A/G | single | intron | 5 | 1000GENOMES,COMPLETE_GENOMICS,GMI,ILLUMINA,SSMP, | 2 | 0.927523 |
DHCR | chr1 | 55348440 | 55348441 | rs78026779 | + | T | C/T | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.041340 |
DHCR | chr1 | 55348515 | 55348516 | rs145476689 | + | T | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.015151 |
DHCR | chr1 | 55349868 | 55349869 | rs665746 | + | C | C/T | single | intron | 22 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.085725 |
DHCR | chr1 | 55349943 | 55349944 | rs77167838 | + | T | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.010889 |
DHCR | chr1 | 55350022 | 55350023 | rs601902 | + | A | A/G | single | intron | 23 | 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.089820 |
DHCR | chr1 | 55350156 | 55350157 | rs114953124 | + | G | C/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.025697 |
DHCR | chr1 | 55350295 | 55350296 | rs149354546 | + | C | C/T | single | intron | 2 | 1000GENOMES,SSMP, | 2 | 0.988981 |
DHCR | chr1 | 55350506 | 55350507 | rs74899804 | + | G | A/G | single | intron | 1 | 1000GENOMES, | 2 | 0.012185 |
DHCR | chr1 | 55351099 | 55351100 | rs12727760 | + | A | A/G | single | intron | 15 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.622486 |
DHCR | chr1 | 55351327 | 55351328 | rs201270494 | + | C | -/C | deletion | intron | 1 | 1000GENOMES, | 2 | 0.176768 |
DHCR | chr1 | 55351330 | 55351332 | rs55982037 | + | CT | -/CT | deletion | intron | 7 | 1000GENOMES,BILGI_BIOE,GMI,HGSV,LUNTER,SSMP,TISHKOFF, | 2 | 0.181818 |
DHCR | chr1 | 55351469 | 55351470 | rs77720262 | + | G | C/G | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.044386 |
DHCR | chr1 | 55351666 | 55351667 | rs75217923 | + | C | C/T | single | intron | 4 | 1000GENOMES,GMI,ILLUMINA,SSMP, | 2 | 0.956049 |
DHCR | chr1 | 55351724 | 55351725 | rs12125145 | + | G | A/G | single | intron | 7 | 1000GENOMES,BGI,GMI,HGSV,SC_SNP,SSMP,TISHKOFF, | 2 | 0.071952 |
DHCR | chr1 | 55351793 | 55351794 | rs76534369 | + | G | C/G | single | intron | 1 | 1000GENOMES, | 2 | 0.011478 |
DHCR | chr1 | 55351955 | 55351956 | rs72675614 | + | G | A/G | single | intron | 5 | 1000GENOMES,BGI,GMI,SSMP,TISHKOFF, | 2 | 0.071133 |
DHCR | chr1 | 55351964 | 55351965 | rs77275526 | + | G | A/G | single | intron | 5 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSMP,TISHKOFF, | 2 | 0.059633 |
DHCR | chr1 | 55352308 | 55352309 | rs77444406 | + | C | C/T | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.959095 |
FLAD1 | chr1 | 154956661 | 154956662 | rs6696397 | + | C | A/C | single | intron | 13 | 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF, | 2 | 0.060000 |
FLAD1 | chr1 | 154956727 | 154956728 | rs78605724 | + | C | C/G | single | intron | 2 | 1000GENOMES,BUSHMAN, | 2 | 0.989450 |
FLAD1 | chr1 | 154956759 | 154956760 | rs78191343 | + | G | C/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.042683 |
FLAD1 | chr1 | 154956984 | 154956985 | rs11590058 | + | C | C/T | single | intron | 9 | 1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,PJP,SSMP,TISHKOFF, | 2 | 0.964253 |
FLAD1 | chr1 | 154957705 | 154957705 | rs200106951 | + | - | -/T | insertion | intron | 1 | 1000GENOMES, | 2 | 0.988981 |
FLAD1 | chr1 | 154958066 | 154958067 | rs12096640 | + | C | C/T | single | intron | 6 | 1000GENOMES,BUSHMAN,GMI,SC_SNP,SSMP,TISHKOFF, | 2 | 0.886239 |
FLAD1 | chr1 | 154958436 | 154958437 | rs189410710 | + | G | A/G | single | intron | 1 | 1000GENOMES, | 2 | 0.012856 |
FLAD1 | chr1 | 154958512 | 154958513 | rs144926241 | + | G | C/G | single | intron | 1 | 1000GENOMES, | 2 | 0.017447 |
FLAD1 | chr1 | 154958515 | 154958516 | rs55699206 | + | T | A/T | single | intron | 2 | 1000GENOMES,HGSV, | 2 | 0.019743 |
FLAD1 | chr1 | 154958517 | 154958518 | rs144402334 | + | T | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.040404 |
FLAD1 | chr1 | 154959520 | 154959521 | rs114699616 | + | C | C/G/T | single | intron | 1 | 1000GENOMES, | 3 | 0.986063 |
FLAD1 | chr1 | 154959881 | 154959882 | rs7525580 | + | A | A/G | single | intron | 12 | 1000GENOMES,AFFY,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.866299 |
FLAD1 | chr1 | 154960018 | 154960019 | rs7528060 | + | T | G/T | single | intron,untranslated-5 | 12 | 1000GENOMES,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.139146 |
FLAD1 | chr1 | 154960064 | 154960065 | rs113906979 | + | G | A/G | single | intron,untranslated-5 | 4 | 1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF, | 2 | 0.016062 |
FLAD1 | chr1 | 154961447 | 154961448 | rs2089247 | + | T | G/T | single | intron,untranslated-3 | 13 | 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.042271 |
FLAD1 | chr1 | 154961457 | 154961458 | rs2878517 | + | A | A/G | single | intron,untranslated-3 | 13 | 1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.955853 |
FLAD1 | chr1 | 154961705 | 154961706 | rs2089248 | + | A | A/G | single | intron,near-gene-3 | 15 | 1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.887726 |
FLAD1 | chr1 | 154963661 | 154963662 | rs59519769 | + | A | A/G | single | intron | 4 | 1000GENOMES,HGSV,SSMP,TISHKOFF, | 2 | 0.910009 |
FLAD1 | chr1 | 154963700 | 154963701 | rs12038762 | + | A | A/T | single | intron | 8 | 1000GENOMES,ABI,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSAHASNP, | 2 | 0.835321 |
FLAD1 | chr1 | 154963755 | 154963756 | rs58044928 | + | C | C/T | single | intron | 3 | 1000GENOMES,HGSV,TISHKOFF, | 2 | 0.950348 |
FLAD1 | chr1 | 154963897 | 154963898 | rs139637379 | + | G | A/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.024793 |
FLAD1 | chr1 | 154963945 | 154963946 | rs28851228 | + | A | A/G | single | intron | 7 | 1000GENOMES,ABI,BUSHMAN,HGSV,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.907925 |
FLAD1 | chr1 | 154964025 | 154964026 | rs145051241 | + | G | A/G | single | intron | 2 | 1000GENOMES,ILLUMINA, | 2 | 0.010101 |
FLAD1 | chr1 | 154964055 | 154964056 | rs57768440 | + | T | C/T | single | intron | 3 | 1000GENOMES,HGSV,TISHKOFF, | 2 | 0.049652 |
FLAD1 | chr1 | 154964419 | 154964420 | rs142793055 | + | C | C/T | single | intron,near-gene-5 | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.961433 |
FLAD1 | chr1 | 154964433 | 154964434 | rs188714244 | + | T | C/T | single | intron,near-gene-5 | 1 | 1000GENOMES, | 2 | 0.010101 |
FLAD1 | chr1 | 154964487 | 154964488 | rs146559430 | + | G | A/G | single | intron,near-gene-5 | 1 | 1000GENOMES, | 2 | 0.014233 |
FLAD1 | chr1 | 154964573 | 154964574 | rs192843098 | + | G | A/G | single | intron,near-gene-5 | 1 | 1000GENOMES, | 2 | 0.010560 |
FLAD1 | chr1 | 154964929 | 154964929 | rs34756997 | + | - | -/AGAC/GAC | insertion | intron,near-gene-5,cds-indel | 4 | 1000GENOMES,ABI,BUSHMAN,LUNTER, | 3 | 0.866636 |
FLAD1 | chr1 | 154965112 | 154965113 | rs7535144 | + | G | G/T | single | intron,near-gene-5 | 12 | 1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.914849 |
FMO3 | chr1 | 171060153 | 171060154 | rs28363520 | + | G | G/T | single | intron | 4 | 1000GENOMES,BUSHMAN,EGP_SNPS,TISHKOFF, | 2 | 0.988146 |
FMO3 | chr1 | 171060207 | 171060208 | rs1736561 | + | G | A/G | single | intron | 20 | 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,UWGC,YUSUKE, | 2 | 0.621224 |
FMO3 | chr1 | 171060359 | 171060360 | rs7060320 | + | G | A/G | single | intron | 4 | 1000GENOMES,BCM_SSAHASNP,BL,EGP_SNPS, | 2 | 0.016115 |
FMO3 | chr1 | 171060654 | 171060655 | rs7881612 | + | A | A/G | single | intron | 7 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, | 2 | 0.971251 |
FMO3 | chr1 | 171060732 | 171060732 | rs35525949 | + | - | -/C | insertion | intron | 8 | 1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,DEVINE_LAB,GMI,LUNTER,SSMP, | 2 | 0.394037 |
FMO3 | chr1 | 171060736 | 171060738 | rs201825632 | + | AA | -/AA | deletion | intron | 1 | 1000GENOMES, | 2 | 0.436639 |
FMO3 | chr1 | 171060755 | 171060756 | rs148451696 | + | G | A/G | single | intron | 2 | 1000GENOMES,MPI_MOLGEN, | 2 | 0.018366 |
FMO3 | chr1 | 171060820 | 171060821 | rs7880204 | + | C | C/T | single | intron | 13 | 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.675787 |
FMO3 | chr1 | 171061031 | 171061033 | rs201550260 | + | GC | -/GC | deletion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.191460 |
FMO3 | chr1 | 171061032 | 171061033 | rs7880493 | + | C | C/T | single | intron | 8 | 1000GENOMES,BUSHMAN,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP, | 2 | 0.883862 |
FMO3 | chr1 | 171061033 | 171061034 | rs28363522 | + | G | A/G | single | intron | 4 | BUSHMAN,EGP_SNPS,ILLUMINA,TISHKOFF, | 2 | 0.041420 |
FMO3 | chr1 | 171061067 | 171061069 | rs28363523 | + | GT | -/GT | deletion | intron | 1 | EGP_SNPS, | 2 | 0.012048 |
FMO3 | chr1 | 171061157 | 171061158 | rs28363524 | + | C | C/T | single | intron | 4 | 1000GENOMES,EGP_SNPS,ILLUMINA,KRIBB_YJKIM, | 2 | 0.982403 |
FMO3 | chr1 | 171061386 | 171061387 | rs113729962 | + | G | A/G | single | intron | 6 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF, | 2 | 0.126948 |
FMO3 | chr1 | 171061988 | 171061989 | rs4140653 | + | C | C/T | single | intron | 7 | 1000GENOMES,BGI,EGP_SNPS,GMI,HGSV,ILLUMINA,PJP, | 2 | 0.902304 |
FMO3 | chr1 | 171061989 | 171061990 | rs2064074 | + | A | A/G | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.574567 |
FMO3 | chr1 | 171062105 | 171062106 | rs6608462 | + | A | A/C | single | intron | 12 | 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, | 2 | 0.967296 |
FMO3 | chr1 | 171062192 | 171062193 | rs16828308 | + | T | C/T | single | intron | 7 | 1000GENOMES,BUSHMAN,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, | 2 | 0.024329 |
FMO3 | chr1 | 171062193 | 171062194 | rs1736566 | + | A | A/G | single | intron | 10 | 1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.904432 |
FMO3 | chr1 | 171062247 | 171062248 | rs2064075 | + | A | A/C | single | intron | 15 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.806507 |
FMO3 | chr1 | 171062497 | 171062498 | rs2064076 | + | G | A/G | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.460151 |
FMO3 | chr1 | 171062621 | 171062650 | rs28745579 | + | GTATTCCATGGTGTG | lengthTooLong | in-del | intron | 1 | EGP_SNPS, | 2 | 0.045454 |
FMO3 | chr1 | 171062650 | 171062651 | rs28745580 | + | C | C/T | single | intron | 1 | EGP_SNPS, | 2 | 0.953488 |
FMO3 | chr1 | 171062666 | 171062667 | rs28745581 | + | C | C/T | single | intron | 5 | 1000GENOMES,BGI,EGP_SNPS,GMI,SSMP, | 2 | 0.894511 |
FMO3 | chr1 | 171062891 | 171062892 | rs1795248 | + | T | C/T | single | intron | 16 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.616963 |
FMO3 | chr1 | 171062995 | 171062996 | rs12732215 | + | G | A/G | single | intron | 7 | 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SSAHASNP, | 2 | 0.317017 |
FMO3 | chr1 | 171062997 | 171062998 | rs115005124 | + | G | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.874674 |
FMO3 | chr1 | 171063027 | 171063028 | rs7886526 | + | G | G/T | single | intron | 10 | 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP, | 2 | 0.538813 |
FMO3 | chr1 | 171063166 | 171063167 | rs141433827 | + | G | A/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.043159 |
FMO3 | chr1 | 171063261 | 171063262 | rs12059956 | + | G | A/G | single | intron | 15 | 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.359909 |
FMO3 | chr1 | 171063522 | 171063523 | rs28745582 | + | T | C/T | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.018190 |
FMO3 | chr1 | 171063550 | 171063551 | rs28745584 | + | A | A/T | single | intron | 6 | 1000GENOMES,BGI,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.863790 |
FMO3 | chr1 | 171063589 | 171063590 | rs28745585 | + | C | C/T | single | intron | 7 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.871199 |
FMO3 | chr1 | 171063685 | 171063686 | rs28745586 | + | A | A/G | single | intron | 4 | 1000GENOMES,EGP_SNPS,GMI,SSMP, | 2 | 0.877327 |
FMO3 | chr1 | 171063792 | 171063793 | rs28745588 | + | G | A/G | single | intron | 6 | 1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.127434 |
FMO3 | chr1 | 171063801 | 171063802 | rs28745589 | + | T | C/T | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.030085 |
FMO3 | chr1 | 171064005 | 171064007 | rs28745591 | + | GT | -/GT | deletion | intron | 6 | 1000GENOMES,EGP_SNPS,GMI,LUNTER,SSMP,TISHKOFF, | 2 | 0.127219 |
FMO3 | chr1 | 171064224 | 171064225 | rs28363526 | + | T | C/T | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.025359 |
FMO3 | chr1 | 171064703 | 171064704 | rs28363527 | + | A | A/G | single | intron | 10 | 1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,SSMP, | 2 | 0.778199 |
FMO3 | chr1 | 171064873 | 171064873 | rs200656733 | + | - | -/TA | insertion | intron | 1 | 1000GENOMES, | 2 | 0.877870 |
FMO3 | chr1 | 171064882 | 171064883 | rs190685191 | + | C | A/C | single | intron | 1 | 1000GENOMES, | 2 | 0.109275 |
FMO3 | chr1 | 171064886 | 171064886 | rs200715887 | + | - | -/ATGA | insertion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.895776 |
FMO3 | chr1 | 171064905 | 171064906 | rs183483206 | + | T | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.029844 |
FMO3 | chr1 | 171064924 | 171064925 | rs188968306 | + | A | A/C | single | intron | 1 | 1000GENOMES, | 2 | 0.974288 |
FMO3 | chr1 | 171064980 | 171064981 | rs193242440 | + | A | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.943526 |
FMO3 | chr1 | 171065002 | 171065003 | rs182699086 | + | T | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.033058 |
FMO3 | chr1 | 171065015 | 171065016 | rs186573324 | + | A | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.939853 |
FMO3 | chr1 | 171065078 | 171065079 | rs191157225 | + | T | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.100551 |
FMO3 | chr1 | 171065119 | 171065120 | rs184045854 | + | G | A/G | single | intron | 1 | 1000GENOMES, | 2 | 0.105142 |
FMO3 | chr1 | 171065181 | 171065182 | rs188383573 | + | T | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.063361 |
FMO3 | chr1 | 171065270 | 171065271 | rs192907268 | + | G | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.751607 |
FMO3 | chr1 | 171065291 | 171065292 | rs185266583 | + | G | G/T | single | intron | 2 | 1000GENOMES,SSMP, | 2 | 0.595960 |
FMO3 | chr1 | 171065357 | 171065358 | rs190527685 | + | T | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.090450 |
FMO3 | chr1 | 171065386 | 171065387 | rs182299466 | + | C | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.857208 |
FMO3 | chr1 | 171065517 | 171065519 | rs202101794 | + | TA | -/TA | deletion | intron | 1 | 1000GENOMES, | 2 | 0.152893 |
FMO3 | chr1 | 171065566 | 171065567 | rs186348903 | + | A | A/G | single | intron | 1 | 1000GENOMES, | 2 | 0.943526 |
FMO3 | chr1 | 171065576 | 171065577 | rs188347521 | + | C | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.918733 |
FMO3 | chr1 | 171065616 | 171065617 | rs180710733 | + | T | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.052801 |
FMO3 | chr1 | 171065686 | 171065687 | rs185723654 | + | C | A/C | single | intron | 1 | 1000GENOMES, | 2 | 0.093205 |
FMO3 | chr1 | 171065707 | 171065708 | rs191417044 | + | C | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.953168 |
FMO3 | chr1 | 171065711 | 171065712 | rs11580161 | + | C | A/C | single | intron | 4 | 1000GENOMES,CSHL-HAPMAP,PJP,SSMP, | 2 | 0.236239 |
FMO3 | chr1 | 171065711 | 171065713 | rs200360778 | + | CT | -/CT | deletion | intron | 1 | 1000GENOMES, | 2 | 0.039945 |
FMO3 | chr1 | 171065732 | 171065733 | rs186894091 | + | C | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.841598 |
FMO3 | chr1 | 171065770 | 171065771 | rs192045829 | + | A | A/C | single | intron | 1 | 1000GENOMES, | 2 | 0.956841 |
FMO3 | chr1 | 171065810 | 171065811 | rs183348524 | + | A | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.896694 |
FMO3 | chr1 | 171065813 | 171065814 | rs187603784 | + | T | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.040404 |
FMO3 | chr1 | 171065940 | 171065941 | rs11578651 | + | G | G/T | single | intron | 8 | 1000GENOMES,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSMP, | 2 | 0.066271 |
FMO3 | chr1 | 171066022 | 171066023 | rs182050121 | + | G | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.986226 |
FMO3 | chr1 | 171066087 | 171066088 | rs77873435 | + | C | A/C/T | single | intron | 4 | 1000GENOMES,ENSEMBL,GMI,PJP, | 2 | 0.216117 |
FMO3 | chr1 | 171066091 | 171066092 | rs192885261 | + | C | C/T | single | intron | 2 | 1000GENOMES,GMI, | 2 | 0.904959 |
FMO3 | chr1 | 171066105 | 171066106 | rs78245463 | + | A | A/G | single | intron | 5 | 1000GENOMES,ENSEMBL,GMI,PJP,SSMP, | 2 | 0.569139 |
FMO3 | chr1 | 171067007 | 171067008 | rs28866833 | + | G | A/G | single | intron | 6 | ABI,ENSEMBL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP, | 2 | 0.400000 |
FMO3 | chr1 | 171067726 | 171067727 | rs138733362 | + | T | C/T | single | intron | 4 | 1000GENOMES,GMI,PJP,SSMP, | 2 | 0.326446 |
FMO3 | chr1 | 171067840 | 171067841 | rs12074485 | + | T | C/T | single | intron | 2 | 1000GENOMES,SC_SNP, | 2 | 0.034894 |
FMO3 | chr1 | 171068185 | 171068186 | rs2204790 | + | A | A/G | single | intron | 11 | 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.823422 |
FMO3 | chr1 | 171068190 | 171068191 | rs2204791 | + | C | C/T | single | intron | 13 | 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.654163 |
FMO3 | chr1 | 171068248 | 171068249 | rs2205725 | + | C | C/G | single | intron | 13 | 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.654022 |
FMO3 | chr1 | 171068249 | 171068250 | rs1795239 | + | G | A/G | single | intron | 9 | 1000GENOMES,ABI,BCM_SSAHASNP,GMI,HGSV,SC_JCM,SEQUENOM,SSMP,TISHKOFF, | 2 | 0.094867 |
FMO3 | chr1 | 171068751 | 171068756 | rs201557815 | + | AAAAG | -/AAAAG | deletion | intron | 1 | 1000GENOMES, | 2 | 0.012856 |
FMO3 | chr1 | 171068843 | 171068844 | rs114446469 | + | T | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.024826 |
FMO3 | chr1 | 171068881 | 171068882 | rs67727346 | + | C | C/T | single | intron,near-gene-5 | 8 | 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,TISHKOFF, | 2 | 0.478738 |
FMO3 | chr1 | 171069028 | 171069029 | rs28363528 | + | G | A/G | single | intron,near-gene-5 | 4 | 1000GENOMES,EGP_SNPS,GMI,SSMP, | 2 | 0.124681 |
FMO3 | chr1 | 171069087 | 171069088 | rs28363530 | + | G | A/G | single | intron,near-gene-5 | 7 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.126904 |
FMO3 | chr1 | 171069156 | 171069157 | rs1920137 | + | A | A/C | single | intron,near-gene-5 | 13 | 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.542194 |
FMO3 | chr1 | 171069958 | 171069959 | rs12076145 | + | A | A/G | single | intron,near-gene-5 | 14 | 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF, | 2 | 0.523667 |
FMO3 | chr1 | 171069981 | 171069982 | rs74602385 | + | A | A/G | single | intron,near-gene-5 | 3 | 1000GENOMES,ILLUMINA,SSMP, | 2 | 0.987144 |
FMO3 | chr1 | 171070088 | 171070089 | rs112371364 | + | A | A/G | single | intron,near-gene-5 | 3 | 1000GENOMES,BUSHMAN,TISHKOFF, | 2 | 0.987615 |
FMO3 | chr1 | 171070175 | 171070176 | rs74319242 | + | G | G/T | single | intron,near-gene-5 | 4 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,MPI_MOLGEN, | 2 | 0.973853 |
FMO3 | chr1 | 171070471 | 171070472 | rs12404455 | + | G | G/T | single | intron,near-gene-3,near-gene-5 | 9 | 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,SSMP,TISHKOFF, | 2 | 0.892692 |
FMO3 | chr1 | 171070795 | 171070796 | rs79111056 | + | C | A/C | single | intron,near-gene-3,near-gene-5 | 3 | 1000GENOMES,BUSHMAN,TISHKOFF, | 2 | 0.012385 |
FMO3 | chr1 | 171071481 | 171071482 | rs72712649 | + | T | A/T | single | intron,near-gene-5 | 6 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF, | 2 | 0.131410 |
FMO3 | chr1 | 171071542 | 171071543 | rs12072547 | + | T | A/T | single | intron,near-gene-5 | 13 | 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, | 2 | 0.344718 |
FMO3 | chr1 | 171071847 | 171071848 | rs28363533 | + | G | C/G | single | intron,near-gene-5 | 7 | 1000GENOMES,BGI,BUSHMAN,EGP_SNPS,GMI,HGSV,SSMP, | 2 | 0.102239 |
FMO3 | chr1 | 171071882 | 171071883 | rs10911192 | + | A | A/C | single | intron,near-gene-5 | 21 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.458189 |
FMO3 | chr1 | 171071973 | 171071974 | rs12072717 | + | T | C/T | single | intron,near-gene-5 | 12 | 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF, | 2 | 0.353659 |
FMO3 | chr1 | 171072235 | 171072236 | rs12403297 | + | G | A/G | single | intron,near-gene-5 | 10 | 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,SSMP,TISHKOFF, | 2 | 0.133024 |
FMO3 | chr1 | 171072317 | 171072318 | rs1983550 | + | G | A/G | single | intron,near-gene-5 | 6 | 1000GENOMES,BGI,EGP_SNPS,GMI,SSMP,TSC-CSHL, | 2 | 0.102292 |
FMO3 | chr1 | 171072582 | 171072584 | rs28363534 | + | CA | -/CA | deletion | intron,near-gene-5 | 4 | 1000GENOMES,EGP_SNPS,LUNTER,TISHKOFF, | 2 | 0.011441 |
FMO3 | chr1 | 171072607 | 171072608 | rs10911238 | + | A | A/T | single | intron,near-gene-5 | 13 | 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.825316 |
FMO3 | chr1 | 171072797 | 171072798 | rs28363535 | + | G | A/G | single | intron,near-gene-5 | 6 | 1000GENOMES,BGI,BUSHMAN,EGP_SNPS,GMI,SSMP, | 2 | 0.101868 |
FMO3 | chr1 | 171072804 | 171072805 | rs199878858 | + | C | C/T | single | intron,near-gene-5 | 1 | CLNPGX_UU, | 2 | 0.986014 |
FMO3 | chr1 | 171072861 | 171072862 | rs28363536 | + | G | G/T | single | intron,near-gene-5 | 8 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,ILLUMINA,SSMP,TISHKOFF, | 2 | 0.869547 |
FMO3 | chr1 | 171073251 | 171073252 | rs28363537 | + | G | A/G | single | intron | 7 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.130565 |
FMO3 | chr1 | 171073577 | 171073578 | rs66963071 | + | A | A/C | single | intron | 4 | 1000GENOMES,BGI,GMI,SSMP, | 2 | 0.899090 |
FMO3 | chr1 | 171073970 | 171073971 | rs151072108 | + | C | C/T | single | intron | 2 | 1000GENOMES,MPI_MOLGEN, | 2 | 0.981175 |
FMO3 | chr1 | 171074001 | 171074002 | rs112505692 | + | G | A/G | single | intron | 5 | 1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF, | 2 | 0.131072 |
FMO3 | chr1 | 171074176 | 171074177 | rs79298244 | + | T | G/T | single | intron | 2 | 1000GENOMES,MPI_MOLGEN, | 2 | 0.018712 |
FMO3 | chr1 | 171074202 | 171074203 | rs77882099 | + | T | A/T | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,GMI, | 2 | 0.126606 |
FMO3 | chr1 | 171074202 | 171074202 | rs201638516 | + | - | -/A | insertion | intron | 2 | 1000GENOMES,GMI, | 2 | 0.869605 |
FMO3 | chr1 | 171074206 | 171074206 | rs35625940 | + | - | -/A | insertion | intron | 4 | 1000GENOMES,ABI,GMI,LUNTER, | 2 | 0.524334 |
FMO3 | chr1 | 171075140 | 171075142 | rs28363539 | + | AA | -/AA | deletion | intron | 7 | 1000GENOMES,ABI,BGI,EGP_SNPS,GMI,LUNTER,SSMP, | 2 | 0.154255 |
FMO3 | chr1 | 171075144 | 171075146 | rs200232134 | + | AC | -/AC | deletion | intron | 1 | 1000GENOMES, | 2 | 0.115702 |
FMO3 | chr1 | 171075195 | 171075196 | rs28745592 | + | T | -/T | deletion | intron | 3 | 1000GENOMES,EGP_SNPS,LUNTER, | 2 | 0.019882 |
FMO3 | chr1 | 171075293 | 171075294 | rs28745593 | + | G | A/G/T | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.020693 |
FMO3 | chr1 | 171075350 | 171075351 | rs10911320 | + | G | A/G | single | intron | 13 | 1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF, | 2 | 0.218908 |
FMO3 | chr1 | 171075406 | 171075407 | rs28363540 | + | A | A/T | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.981841 |
FMO3 | chr1 | 171075463 | 171075464 | rs28363541 | + | A | A/G | single | intron | 6 | 1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.867062 |
FMO3 | chr1 | 171075555 | 171075556 | rs10797877 | + | C | C/T | single | intron | 16 | 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.499789 |
FMO3 | chr1 | 171075559 | 171075560 | rs28363542 | + | C | C/T | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.981718 |
FMO3 | chr1 | 171075575 | 171075576 | rs10797878 | + | T | C/T | single | intron | 17 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.341927 |
FMO3 | chr1 | 171075809 | 171075811 | rs148261088 | + | AC | -/AC | deletion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.015611 |
FMO3 | chr1 | 171075812 | 171075814 | rs28363543 | + | CA | -/CA | deletion | intron | 2 | BUSHMAN,EGP_SNPS, | 2 | 0.026042 |
FMO3 | chr1 | 171075996 | 171075997 | rs1080197 | + | T | C/T | single | intron | 12 | 1000GENOMES,ABI,BUSHMAN,DEVINE_LAB,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL, | 2 | 0.116740 |
FMO3 | chr1 | 171076337 | 171076338 | rs6608463 | + | C | C/T | single | intron | 10 | 1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA-UK,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP, | 2 | 0.978481 |
FMO3 | chr1 | 171076739 | 171076740 | rs28363545 | + | T | C/T | single | intron | 6 | 1000GENOMES,BGI,EGP_SNPS,GMI,HGSV,SSMP, | 2 | 0.123624 |
FMO3 | chr1 | 171077038 | 171077041 | rs143661234 | + | TCT | -/TCT | deletion | intron | 5 | 1000GENOMES,GMI,LUNTER,SSMP,WARNICH_LAB, | 2 | 0.120753 |
FMO3 | chr1 | 171077042 | 171077043 | rs3832023 | + | C | -/C/CTT | in-del | intron,cds-indel | 6 | 1000GENOMES,CLNPGX_UU,DEVINE_LAB,EGP_SNPS,HGSV,YUSUKE, | 2 | 0.120559 |
FMO3 | chr1 | 171077164 | 171077165 | rs2066529 | + | G | A/G | single | intron | 13 | 1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGBASE,PERLEGEN,SI_EXO,SSMP,TISHKOFF,UWGC,YUSUKE, | 2 | 0.133027 |
FMO3 | chr1 | 171077197 | 171077198 | rs1920149 | + | G | A/G | single | intron | 27 | 1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,UWGC,YUSUKE, | 2 | 0.516375 |
FMO3 | chr1 | 171077371 | 171077372 | rs2066534 | + | C | C/G | single | intron | 25 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,PJP,SC_SNP,SI_EXO,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,UWGC, | 2 | 0.829694 |
FMO3 | chr1 | 171077502 | 171077503 | rs28363550 | + | C | -/C | deletion | intron | 6 | 1000GENOMES,EGP_SNPS,GMI,LUNTER,SSMP,TISHKOFF, | 2 | 0.131134 |
FMO3 | chr1 | 171077506 | 171077507 | rs200758892 | + | A | -/A | deletion | intron | 1 | 1000GENOMES, | 2 | 0.066116 |
FMO3 | chr1 | 171077674 | 171077675 | rs28363552 | + | G | A/G | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.018190 |
FMO3 | chr1 | 171077763 | 171077764 | rs28363553 | + | A | A/G | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.979290 |
FMO3 | chr1 | 171077781 | 171077782 | rs10797894 | + | A | A/C | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.812791 |
FMO3 | chr1 | 171077899 | 171077900 | rs28363554 | + | G | C/G | single | intron | 4 | 1000GENOMES,EGP_SNPS,HGSV,TISHKOFF, | 2 | 0.010970 |
FMO3 | chr1 | 171078568 | 171078569 | rs1736556 | + | C | C/G | single | intron | 21 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.361252 |
FMO3 | chr1 | 171078833 | 171078834 | rs28363557 | + | C | C/T | single | intron | 5 | 1000GENOMES,BUSHMAN,EGP_SNPS,GMI,SSMP, | 2 | 0.893266 |
FMO3 | chr1 | 171078977 | 171078978 | rs28363558 | + | C | C/T | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.981811 |
FMO3 | chr1 | 171079004 | 171079005 | rs16864042 | + | G | G/T | single | intron | 13 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, | 2 | 0.638212 |
FMO3 | chr1 | 171079228 | 171079229 | rs28363560 | + | C | C/T | single | intron | 5 | 1000GENOMES,BGI,EGP_SNPS,GMI,SSMP, | 2 | 0.898046 |
FMO3 | chr1 | 171079458 | 171079459 | rs28363562 | + | C | C/T | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.978353 |
FMO3 | chr1 | 171079548 | 171079549 | rs2235192 | + | C | A/C | single | intron | 17 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, | 2 | 0.352463 |
FMO3 | chr1 | 171079550 | 171079551 | rs28363563 | + | A | A/G | single | intron | 4 | 1000GENOMES,BGI,EGP_SNPS,GMI, | 2 | 0.980017 |
FMO3 | chr1 | 171079699 | 171079700 | rs7051320 | + | C | C/T | single | intron | 11 | 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF, | 2 | 0.942107 |
FMO3 | chr1 | 171079927 | 171079928 | rs201838898 | + | T | C/T | single | intron | 1 | CLNPGX_UU, | 2 | 0.013513 |
FMO3 | chr1 | 171080484 | 171080485 | rs2075992 | + | C | C/T | single | intron | 20 | 1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.354335 |
FMO3 | chr1 | 171080614 | 171080615 | rs7061710 | + | G | C/G | single | intron | 13 | 1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, | 2 | 0.251627 |
FMO3 | chr1 | 171080628 | 171080629 | rs2281002 | + | C | A/C | single | intron | 8 | 1000GENOMES,AFFY,BGI,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,SSMP,YUSUKE, | 2 | 0.104266 |
FMO3 | chr1 | 171080732 | 171080733 | rs28363570 | + | C | C/T | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.976903 |
FMO3 | chr1 | 171080956 | 171080957 | rs7062331 | + | G | A/G | single | intron | 6 | 1000GENOMES,BCM_SSAHASNP,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,TISHKOFF, | 2 | 0.031031 |
FMO3 | chr1 | 171081142 | 171081143 | rs28363571 | + | G | A/G | single | intron | 7 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF, | 2 | 0.133845 |
FMO3 | chr1 | 171081837 | 171081838 | rs28363575 | + | A | A/G | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.979237 |
FMO3 | chr1 | 171081984 | 171081984 | rs61701642 | + | - | -/C | insertion | intron | 12 | 1000GENOMES,BGI,BILGI_BIOE,BL,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF, | 2 | 0.000000 |
FMO3 | chr1 | 171082647 | 171082648 | rs76575647 | + | C | C/T | single | intron | 2 | 1000GENOMES,MPI_MOLGEN, | 2 | 0.986510 |
FMO3 | chr1 | 171082758 | 171082759 | rs12073562 | + | G | G/T | single | intron | 7 | 1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, | 2 | 0.982599 |
FMO3 | chr1 | 171082895 | 171082896 | rs909529 | + | C | C/T | single | intron | 10 | 1000GENOMES,BGI,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE, | 2 | 0.874192 |
FMO3 | chr1 | 171082953 | 171082954 | rs16864050 | + | G | A/G | single | intron | 6 | 1000GENOMES,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, | 2 | 0.015744 |
FMO3 | chr1 | 171083536 | 171083537 | rs909531 | + | T | C/T | single | intron | 18 | 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,GMI,HGBASE,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,UWGC, | 2 | 0.217603 |
FMO3 | chr1 | 171083713 | 171083714 | rs909532 | + | C | C/T | single | intron | 11 | 1000GENOMES,ABI,BGI,BUSHMAN,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.877931 |
FMO3 | chr1 | 171083846 | 171083847 | rs28363583 | + | A | A/G | single | intron | 2 | 1000GENOMES,EGP_SNPS, | 2 | 0.975000 |
FMO3 | chr1 | 171083881 | 171083882 | rs74854600 | + | T | C/T | single | intron | 2 | 1000GENOMES,MPI_MOLGEN, | 2 | 0.013490 |
FMO3 | chr1 | 171083887 | 171083888 | rs28363584 | + | C | C/T | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.959322 |
FMO3 | chr1 | 171084148 | 171084149 | rs12405599 | + | G | G/T | single | intron | 12 | 1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, | 2 | 0.881091 |
FMO3 | chr1 | 171084160 | 171084161 | rs2236872 | + | G | A/G | single | intron | 14 | 1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA-UK,PERLEGEN,SSMP,TISHKOFF,YUSUKE, | 2 | 0.332935 |
FMO3 | chr1 | 171084241 | 171084242 | rs12406572 | + | C | A/C | single | intron | 13 | 1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF, | 2 | 0.223355 |
FMO3 | chr1 | 171084531 | 171084532 | rs28363588 | + | T | -/T | deletion | intron | 3 | 1000GENOMES,EGP_SNPS,LUNTER, | 2 | 0.020495 |
FMO3 | chr1 | 171084571 | 171084572 | rs28363589 | + | G | A/G | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.015825 |
FMO3 | chr1 | 171084711 | 171084712 | rs2236873 | + | A | A/T | single | intron | 12 | 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA-UK,PERLEGEN,SSMP,TISHKOFF,YUSUKE, | 2 | 0.662542 |
FMO3 | chr1 | 171084712 | 171084713 | rs28363590 | + | C | A/C | single | intron | 10 | 1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF, | 2 | 0.178374 |
FMO3 | chr1 | 171084953 | 171084954 | rs116805194 | + | G | G/T | single | intron | 2 | 1000GENOMES,MPI_MOLGEN, | 2 | 0.986075 |
FMO3 | chr1 | 171085314 | 171085314 | rs2066528 | + | - | -/T | insertion | intron | 12 | 1000GENOMES,BGI,BUSHMAN,DEVINE_LAB,EGP_SNPS,GMI,HGBASE,HGSV,LUNTER,SSMP,TISHKOFF,UWGC, | 2 | 0.664222 |
FMO3 | chr1 | 171085581 | 171085582 | rs16864066 | + | C | C/T | single | intron | 6 | 1000GENOMES,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF, | 2 | 0.974066 |
FMO3 | chr1 | 171085645 | 171085646 | rs1736559 | + | G | G/T | single | intron | 10 | 1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE, | 2 | 0.901809 |
FMO3 | chr1 | 171085676 | 171085677 | rs17564980 | + | C | C/T | single | intron | 10 | 1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF, | 2 | 0.881526 |
FMO3 | chr1 | 171085843 | 171085844 | rs28363592 | + | G | A/G | single | intron | 3 | 1000GENOMES,EGP_SNPS,TISHKOFF, | 2 | 0.015691 |
FMO3 | chr1 | 171085913 | 171085914 | rs12085248 | + | T | C/T | single | intron | 7 | 1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF, | 2 | 0.056167 |
FMO3 | chr1 | 171086079 | 171086080 | rs28363593 | + | G | G/T | single | intron | 5 | 1000GENOMES,BUSHMAN,EGP_SNPS,ILLUMINA-UK,TISHKOFF, | 2 | 0.980607 |
FMO3 | chr1 | 171086183 | 171086184 | rs28363594 | + | T | C/T | single | intron | 4 | 1000GENOMES,BUSHMAN,EGP_SNPS,TISHKOFF, | 2 | 0.012236 |
KDM1A | chr1 | 23346648 | 23346649 | rs148150162 | + | G | A/G | single | intron | 2 | 1000GENOMES,ILLUMINA, | 2 | 0.010101 |
KDM1A | chr1 | 23347124 | 23347125 | rs1413974 | + | C | C/T | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,YUSUKE, | 2 | 0.654899 |
KDM1A | chr1 | 23348827 | 23348827 | rs201642314 | + | - | -/G | insertion | intron | 1 | 1000GENOMES, | 2 | 0.983012 |
KDM1A | chr1 | 23349127 | 23349128 | rs647551 | + | T | C/T | single | intron | 15 | 1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,TISHKOFF,WI_SSAHASNP, | 2 | 0.747604 |
KDM1A | chr1 | 23349528 | 23349529 | rs12737238 | + | T | G/T | single | intron | 1 | SSAHASNP, | 2 | 0.876405 |
KDM1A | chr1 | 23349535 | 23349536 | rs493155 | - | G | C/T | single | intron | 5 | 1000GENOMES,ABI,COMPLETE_GENOMICS,SC_JCM,TISHKOFF, | 2 | 0.984862 |
KDM1A | chr1 | 23349870 | 23349871 | rs116086480 | + | T | G/T | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.025261 |
KDM1A | chr1 | 23350126 | 23350127 | rs576925 | - | A | A/T | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,SC_JCM, | 2 | 0.014220 |
KDM1A | chr1 | 23350653 | 23350654 | rs138534510 | + | T | -/T | deletion | intron | 3 | 1000GENOMES,LUNTER,TISHKOFF, | 2 | 0.024334 |
KDM1A | chr1 | 23351538 | 23351539 | rs12057276 | + | G | A/G | single | intron | 5 | 1000GENOMES,BUSHMAN,PJP,SC_SNP,TISHKOFF, | 2 | 0.036609 |
KDM1A | chr1 | 23351939 | 23351940 | rs113289593 | + | C | C/G | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, | 2 | 0.985780 |
KDM1A | chr1 | 23352165 | 23352166 | rs6683468 | + | A | A/C | single | intron | 7 | 1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PJP,TISHKOFF, | 2 | 0.953343 |
KDM1A | chr1 | 23352297 | 23352298 | rs76830165 | + | A | A/G | single | intron | 2 | 1000GENOMES,ILLUMINA, | 2 | 0.978242 |
KDM1A | chr1 | 23352888 | 23352888 | rs144940081 | + | - | -/GTT/TT/TTG | insertion | intron,cds-indel | 4 | 1000GENOMES,BILGI_BIOE,GMI,PJP, | 2 | 0.298439 |
KDM1A | chr1 | 23352889 | 23352889 | rs67713820 | + | - | -/GTT/TG/TTG | insertion | intron,cds-indel | 5 | 1000GENOMES,BGI,BUSHMAN,DEVINE_LAB,SSMP, | 2 | 0.302294 |
KDM1A | chr1 | 23353767 | 23353768 | rs74470274 | + | C | C/T | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.957317 |
KDM1A | chr1 | 23353818 | 23353819 | rs74355150 | + | C | A/C | single | intron | 2 | 1000GENOMES,GMI, | 2 | 0.036989 |
KDM1A | chr1 | 23354813 | 23354814 | rs12128178 | + | C | C/T | single | intron | 15 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP, | 2 | 0.617002 |
KDM1A | chr1 | 23354876 | 23354877 | rs7548692 | + | T | A/T | single | intron | 14 | 1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.289110 |
KDM1A | chr1 | 23355951 | 23355952 | rs591764 | - | G | A/C | single | intron | 6 | 1000GENOMES,ABI,COMPLETE_GENOMICS,KWOK,SC_JCM,TISHKOFF, | 2 | 0.015138 |
KDM1A | chr1 | 23356257 | 23356258 | rs6659638 | + | G | C/G | single | intron | 3 | 1000GENOMES,BCM_SSAHASNP,TISHKOFF, | 2 | 0.033058 |
KDM1A | chr1 | 23356863 | 23356864 | rs10799788 | + | G | A/G | single | intron | 17 | 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.281607 |
KDM1A | chr1 | 23357281 | 23357282 | rs6682560 | + | A | A/T | single | intron | 5 | 1000GENOMES,BCM_SSAHASNP,GMI,ILLUMINA-UK,SSMP, | 2 | 0.897706 |
KDM1A | chr1 | 23357482 | 23357483 | rs78636248 | + | A | A/G | single | intron | 1 | 1000GENOMES, | 2 | 0.989983 |
KDM1A | chr1 | 23358027 | 23358028 | rs17369793 | + | T | G/T | single | intron | 3 | 1000GENOMES,ILLUMINA,PERLEGEN, | 2 | 0.018998 |
KDM1A | chr1 | 23358999 | 23358999 | rs5773031 | + | - | -/G | insertion | intron | 10 | 1000GENOMES,ABI,BILGI_BIOE,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP, | 2 | 0.618807 |
KDM1A | chr1 | 23359599 | 23359600 | rs10917345 | + | A | A/G | single | intron | 13 | 1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.237443 |
KDM1A | chr1 | 23359789 | 23359790 | rs7555529 | + | G | A/G | single | intron | 9 | 1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.281722 |
KDM1A | chr1 | 23360222 | 23360223 | rs12117752 | + | T | C/T | single | intron | 15 | 1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP, | 2 | 0.380482 |
KDM1A | chr1 | 23360264 | 23360265 | rs10799789 | + | G | A/G | single | intron | 20 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.733188 |
KDM1A | chr1 | 23360615 | 23360616 | rs75702621 | + | A | A/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.958624 |
KDM1A | chr1 | 23360643 | 23360643 | rs139969274 | + | - | -/T | insertion | intron | 3 | 1000GENOMES,LUNTER,TISHKOFF, | 2 | 0.985308 |
KDM1A | chr1 | 23360695 | 23360696 | rs116787935 | + | T | C/T | single | intron | 1 | 1000GENOMES, | 2 | 0.010017 |
KDM1A | chr1 | 23361013 | 23361013 | rs146716432 | + | - | -/A | insertion | intron | 3 | 1000GENOMES,LUNTER,TISHKOFF, | 2 | 0.965565 |
KDM1A | chr1 | 23361957 | 23361958 | rs144044398 | + | G | A/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.034435 |
KDM1A | chr1 | 23362687 | 23362688 | rs669731 | + | A | A/C | single | intron | 6 | 1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,TISHKOFF, | 2 | 0.974760 |
KDM1A | chr1 | 23363043 | 23363044 | rs671357 | + | G | A/G | single | intron | 21 | 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.795019 |
KDM1A | chr1 | 23363614 | 23363614 | rs199672006 | + | - | -/AT | insertion | intron | 1 | 1000GENOMES, | 2 | 0.949954 |
KDM1A | chr1 | 23363621 | 23363622 | rs590356 | + | T | C/T | single | intron | 6 | 1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_JCM,WI_SSAHASNP, | 2 | 0.060037 |
KDM1A | chr1 | 23363776 | 23363777 | rs143982504 | + | A | A/C | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.966024 |
KDM1A | chr1 | 23364206 | 23364207 | rs117438260 | + | A | A/C | single | intron | 2 | 1000GENOMES,SSMP, | 2 | 0.986075 |
KDM1A | chr1 | 23364918 | 23364919 | rs4654834 | + | T | C/T | single | intron | 19 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.424861 |
KDM1A | chr1 | 23365183 | 23365184 | rs686663 | + | A | A/G | single | intron | 21 | 1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE, | 2 | 0.209218 |
KDM1A | chr1 | 23366697 | 23366698 | rs72875357 | + | T | C/T | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF, | 2 | 0.015138 |
KDM1A | chr1 | 23366883 | 23366884 | rs1123021 | - | A | C/T | single | intron | 12 | 1000GENOMES,ABI,DEVINE_LAB,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.103181 |
KDM1A | chr1 | 23367137 | 23367138 | rs1984576 | - | A | C/T | single | intron | 15 | 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.437986 |
KDM1A | chr1 | 23367472 | 23367473 | rs9919326 | + | C | C/G | single | intron | 3 | 1000GENOMES,BCM_SSAHASNP,TISHKOFF, | 2 | 0.959059 |
KDM1A | chr1 | 23368127 | 23368128 | rs7519326 | + | G | A/G | single | intron | 4 | 1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,WI_SSAHASNP, | 2 | 0.023394 |
KDM1A | chr1 | 23368281 | 23368281 | rs146205896 | + | - | -/A | insertion | intron | 4 | 1000GENOMES,GMI,LUNTER,SSMP, | 2 | 0.928375 |
KDM1A | chr1 | 23368337 | 23368337 | rs144803602 | + | - | -/A | insertion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.966942 |
KDM1A | chr1 | 23368461 | 23368462 | rs10737471 | + | A | A/G | single | intron | 19 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.273100 |
KDM1A | chr1 | 23368466 | 23368467 | rs114072618 | + | T | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.010453 |
KDM1A | chr1 | 23369120 | 23369121 | rs61333895 | + | A | A/G | single | intron,near-gene-5 | 2 | 1000GENOMES,HGSV, | 2 | 0.943067 |
KDM1A | chr1 | 23369276 | 23369277 | rs137993948 | + | T | G/T | single | intron,near-gene-5 | 3 | 1000GENOMES,SSMP,TISHKOFF, | 2 | 0.102388 |
KDM1A | chr1 | 23369507 | 23369508 | rs616501 | + | A | A/C | single | intron,near-gene-5 | 14 | 1000GENOMES,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP, | 2 | 0.220293 |
KDM1A | chr1 | 23371607 | 23371608 | rs587168 | + | A | A/C | single | intron | 20 | 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.262956 |
KDM1A | chr1 | 23371920 | 23371921 | rs10489564 | - | G | C/T | single | intron | 9 | 1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF, | 2 | 0.955959 |
KDM1A | chr1 | 23372172 | 23372173 | rs115368683 | + | T | G/T | single | intron | 1 | 1000GENOMES, | 2 | 0.016986 |
KDM1A | chr1 | 23372770 | 23372771 | rs2294518 | - | T | A/G | single | intron | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP,YUSUKE, | 2 | 0.651871 |
KDM1A | chr1 | 23372880 | 23372881 | rs4655144 | + | A | A/T | single | intron | 19 | 1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.027273 |
KDM1A | chr1 | 23373690 | 23373691 | rs139448894 | + | A | -/A | deletion | intron | 4 | 1000GENOMES,LUNTER,SSMP,TISHKOFF, | 2 | 0.016988 |
KDM1A | chr1 | 23373745 | 23373746 | rs61336240 | + | G | A/G | single | intron | 5 | 1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF, | 2 | 0.058203 |
KDM1A | chr1 | 23373838 | 23373839 | rs598197 | - | A | G/T | single | intron | 3 | 1000GENOMES,COMPLETE_GENOMICS,SC_JCM, | 2 | 0.014220 |
KDM1A | chr1 | 23374413 | 23374414 | rs7528562 | + | A | A/C | single | intron | 3 | 1000GENOMES,SC_SNP,WI_SSAHASNP, | 2 | 0.972452 |
KDM1A | chr1 | 23374628 | 23374629 | rs2143156 | - | T | A/C | single | intron | 12 | 1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA-UK,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.710165 |
KDM1A | chr1 | 23374925 | 23374926 | rs114889658 | + | A | A/T | single | intron | 1 | 1000GENOMES, | 2 | 0.977352 |
KDM1A | chr1 | 23374925 | 23374926 | rs201135793 | + | A | -/A | deletion | intron | 1 | 1000GENOMES, | 2 | 0.010560 |
KDM1A | chr1 | 23374950 | 23374951 | rs649648 | + | A | A/G | single | intron | 21 | 1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.221769 |
KDM1A | chr1 | 23375107 | 23375108 | rs10753552 | + | C | C/T | single | intron | 19 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.270159 |
KDM1A | chr1 | 23375466 | 23375467 | rs199648094 | + | C | -/C | deletion | intron | 3 | 1000GENOMES,LUNTER,TISHKOFF, | 2 | 0.014692 |
KDM1A | chr1 | 23375692 | 23375693 | rs5027299 | + | A | A/G | single | intron | 11 | 1000GENOMES,ABI,AFFY,BUSHMAN,DEVINE_LAB,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP, | 2 | 0.918599 |
KDM1A | chr1 | 23375925 | 23375927 | rs71893737 | + | AT | -/AT | deletion | intron | 3 | 1000GENOMES,DEVINE_LAB,LUNTER, | 2 | 0.014692 |
KDM1A | chr1 | 23376003 | 23376004 | rs4545309 | + | C | C/T | single | intron | 5 | 1000GENOMES,ABI,DEVINE_LAB,SC_JCM,SC_SNP, | 2 | 0.971534 |
KDM1A | chr1 | 23376190 | 23376191 | rs78340593 | + | A | A/G | single | intron | 2 | 1000GENOMES,ILLUMINA-UK, | 2 | 0.987615 |
KDM1A | chr1 | 23376232 | 23376233 | rs6680974 | + | A | A/G | single | intron | 12 | 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,PJP,SSMP, | 2 | 0.718007 |
KDM1A | chr1 | 23376344 | 23376345 | rs72657821 | + | T | C/T | single | intron | 2 | 1000GENOMES,SSMP, | 2 | 0.046319 |
KDM1A | chr1 | 23376540 | 23376541 | rs10917347 | + | T | G/T | single | intron | 16 | 1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP, | 2 | 0.236441 |
KDM1A | chr1 | 23376559 | 23376560 | rs12074836 | + | T | C/T | single | intron | 3 | 1000GENOMES,SC_SNP,TISHKOFF, | 2 | 0.036585 |
KDM1A | chr1 | 23376672 | 23376673 | rs12078443 | + | G | A/G | single | intron | 5 | 1000GENOMES,BUSHMAN,ILLUMINA-UK,SC_SNP,TISHKOFF, | 2 | 0.058203 |
KDM1A | chr1 | 23377580 | 23377580 | rs201778126 | + | - | -/A | insertion | intron | 2 | 1000GENOMES,SSMP, | 2 | 0.978421 |
KDM1A | chr1 | 23378626 | 23378627 | rs559431 | - | T | A/G | single | intron | 22 | 1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE, | 2 | 0.223238 |
KDM1A | chr1 | 23379249 | 23379250 | rs7529938 | + | T | C/T | single | intron | 4 | 1000GENOMES,BUSHMAN,TISHKOFF,WI_SSAHASNP, | 2 | 0.037173 |
KDM1A | chr1 | 23379468 | 23379469 | rs117174958 | + | T | C/T | single | intron | 3 | 1000GENOMES,GMI,SSMP, | 2 | 0.011749 |
KDM1A | chr1 | 23380107 | 23380108 | rs694839 | + | G | G/T | single | intron | 4 | 1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF, | 2 | 0.984862 |
KDM1A | chr1 | 23380197 | 23380198 | rs579785 | - | A | C/T | single | intron | 21 | 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE, | 2 | 0.790814 |
KDM1A | chr1 | 23380782 | 23380783 | rs574530 | - | A | C/T | single | intron | 5 | 1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,WI_SSAHASNP, | 2 | 0.015138 |
KDM1A | chr1 | 23381027 | 23381028 | rs78415141 | + | G | C/G | single | intron | 3 | 1000GENOMES,BUSHMAN,TISHKOFF, | 2 | 0.034419 |
KDM1A | chr1 | 23381115 | 23381116 | rs7543975 | + | G | A/G | single | intron | 16 | 1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP, | 2 | 0.293920 |
KDM1A | chr1 | 23382400 | 23382400 | rs142119400 | + | - | -/T | insertion | intron | 2 | 1000GENOMES,LUNTER, | 2 | 0.971534 |
KDM1A | chr1 | 23382728 | 23382729 | rs763310 | + | A | A/G | single | intron | 20 | 1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.208494 |
KDM1A | chr1 | 23382835 | 23382836 | rs72875371 | + | C | C/G | single | intron | 2 | 1000GENOMES,COMPLETE_GENOMICS, | 2 | 0.985780 |
KDM1A | chr1 | 23383255 | 23383256 | rs78127835 | + | A | A/G | single | intron | 2 | 1000GENOMES,TISHKOFF, | 2 | 0.957753 |
KDM1A | chr1 | 23383703 | 23383704 | rs11806664 | + | G | A/G | single | intron | 19 | 1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF, | 2 | 0.706333 |
KDM1A | chr1 | 23384184 | 23384185 | rs28663624 | + | A | A/G | single | intron,near-gene-3 | 5 | 1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSAHASNP,TISHKOFF, | 2 | 0.984862 |
KDM1A | chr1 | 23384536 | 23384537 | rs2869044 | - | C | A/G | single | intron,near-gene-5 | 20 | 1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.705079 |
KDM1A | chr1 | 23384755 | 23384756 | rs1984978 | + | G | A/G | single | intron,near-gene-5 | 18 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.722678 |
KDM1A | chr1 | 23384835 | 23384836 | rs2007023 | + | T | C/T | single | intron,near-gene-5 | 16 | 1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL, | 2 | 0.743730 |
KDM1A | chr1 | 23385823 | 23385825 | rs200504041 | + | CT | -/CT | deletion | intron,near-gene-5 | 1 | 1000GENOMES, | 2 | 0.283747 |
KDM1A | chr1 | 23385826 | 23385828 | rs79588010 | + | TT | -/TT | deletion | intron,near-gene-5 | 6 | 1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP,TISHKOFF, | 2 | 0.286893 |
KDM1A | chr1 | 23386165 | 23386166 | rs998894 | - | T | A/G | single | intron,near-gene-5 | 16 | 1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP, | 2 | 0.919919 |
KDM1A | chr1 | 23386319 | 23386320 | rs12081529 | + | T | C/T | single | intron,near-gene-5 | 5 | 1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF, | 2 | 0.050923 |
KDM1A | chr1 | 23386752 | 23386753 | rs72657824 | + | A | A/G | single | intron | 3 | 1000GENOMES,ILLUMINA,SSMP, | 2 | 0.951697 |
KDM1A | chr1 | 23387833 | 23387834 | rs61256955 | + | G | G/T | single | intron | 4 | 1000GENOMES,HGSV,ILLUMINA,TISHKOFF, | 2 | 0.963850 |
KDM1A | chr1 | 23387834 | 23387835 | rs481877 | + | C | C/T | single | intron | 7 | 1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF, | 2 | 0.977318 |
KDM1A | chr1 | 23387941 | 23387942 | rs146066631 | + | T | G/T | single | intron | 3 | 1000GENOMES,ILLUMINA,SSMP, | 2 | 0.010560 |
KDM1A | chr1 | 23388031 | 23388032 | rs34092336 | + | G | A/G | single | intron | 7 | 1000GENOMES,ABI,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,SSMP, | 2 | 0.086081 |
KDM1A | chr1 | 23388259 | 23388260 | rs649377 | - | G | C/T | single | intron | 4 | 1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF, | 2 | 0.984862 |