Riboflavin Intron Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Class	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
FLAD1	chr1	154961705	154961706	rs2089248	+	A	A/G	single	intron,near-gene-3	15	1000GENOMES,ABI,AFFY,BCM_SSAHASNP,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,TSC-CSHL,	2	0.887726
FLAD1	chr1	154963661	154963662	rs59519769	+	A	A/G	single	intron	4	1000GENOMES,HGSV,SSMP,TISHKOFF,	2	0.910009
FLAD1	chr1	154963700	154963701	rs12038762	+	A	A/T	single	intron	8	1000GENOMES,ABI,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSAHASNP,	2	0.835321
FLAD1	chr1	154963755	154963756	rs58044928	+	C	C/T	single	intron	3	1000GENOMES,HGSV,TISHKOFF,	2	0.950348
FLAD1	chr1	154963897	154963898	rs139637379	+	G	A/G	single	intron	2	1000GENOMES,TISHKOFF,	2	0.024793
FLAD1	chr1	154963945	154963946	rs28851228	+	A	A/G	single	intron	7	1000GENOMES,ABI,BUSHMAN,HGSV,SSAHASNP,SSMP,TISHKOFF,	2	0.907925
FLAD1	chr1	154964025	154964026	rs145051241	+	G	A/G	single	intron	2	1000GENOMES,ILLUMINA,	2	0.010101
FLAD1	chr1	154964055	154964056	rs57768440	+	T	C/T	single	intron	3	1000GENOMES,HGSV,TISHKOFF,	2	0.049652
FLAD1	chr1	154964419	154964420	rs142793055	+	C	C/T	single	intron,near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.961433
FLAD1	chr1	154964433	154964434	rs188714244	+	T	C/T	single	intron,near-gene-5	1	1000GENOMES,	2	0.010101
FLAD1	chr1	154964487	154964488	rs146559430	+	G	A/G	single	intron,near-gene-5	1	1000GENOMES,	2	0.014233
FLAD1	chr1	154964573	154964574	rs192843098	+	G	A/G	single	intron,near-gene-5	1	1000GENOMES,	2	0.010560
FLAD1	chr1	154964929	154964929	rs34756997	+	-	-/AGAC/GAC	insertion	intron,near-gene-5,cds-indel	4	1000GENOMES,ABI,BUSHMAN,LUNTER,	3	0.866636
FLAD1	chr1	154965112	154965113	rs7535144	+	G	G/T	single	intron,near-gene-5	12	1000GENOMES,AFFY,BUSHMAN,CLINSEQ_SNP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.914849
FMO3	chr1	171060153	171060154	rs28363520	+	G	G/T	single	intron	4	1000GENOMES,BUSHMAN,EGP_SNPS,TISHKOFF,	2	0.988146
FMO3	chr1	171060207	171060208	rs1736561	+	G	A/G	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,UWGC,YUSUKE,	2	0.621224
FMO3	chr1	171060359	171060360	rs7060320	+	G	A/G	single	intron	4	1000GENOMES,BCM_SSAHASNP,BL,EGP_SNPS,	2	0.016115
FMO3	chr1	171060654	171060655	rs7881612	+	A	A/G	single	intron	7	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP,	2	0.971251
FMO3	chr1	171060732	171060732	rs35525949	+	-	-/C	insertion	intron	8	1000GENOMES,ABI,BILGI_BIOE,BUSHMAN,DEVINE_LAB,GMI,LUNTER,SSMP,	2	0.394037
FMO3	chr1	171060736	171060738	rs201825632	+	AA	-/AA	deletion	intron	1	1000GENOMES,	2	0.436639
FMO3	chr1	171060755	171060756	rs148451696	+	G	A/G	single	intron	2	1000GENOMES,MPI_MOLGEN,	2	0.018366
FMO3	chr1	171060820	171060821	rs7880204	+	C	C/T	single	intron	13	1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.675787
FMO3	chr1	171061031	171061033	rs201550260	+	GC	-/GC	deletion	intron	2	1000GENOMES,LUNTER,	2	0.191460
FMO3	chr1	171061032	171061033	rs7880493	+	C	C/T	single	intron	8	1000GENOMES,BUSHMAN,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP,	2	0.883862
FMO3	chr1	171061033	171061034	rs28363522	+	G	A/G	single	intron	4	BUSHMAN,EGP_SNPS,ILLUMINA,TISHKOFF,	2	0.041420
FMO3	chr1	171061067	171061069	rs28363523	+	GT	-/GT	deletion	intron	1	EGP_SNPS,	2	0.012048
FMO3	chr1	171061157	171061158	rs28363524	+	C	C/T	single	intron	4	1000GENOMES,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,	2	0.982403
FMO3	chr1	171061386	171061387	rs113729962	+	G	A/G	single	intron	6	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF,	2	0.126948
FMO3	chr1	171061988	171061989	rs4140653	+	C	C/T	single	intron	7	1000GENOMES,BGI,EGP_SNPS,GMI,HGSV,ILLUMINA,PJP,	2	0.902304
FMO3	chr1	171061989	171061990	rs2064074	+	A	A/G	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,TSC-CSHL,	2	0.574567
FMO3	chr1	171062105	171062106	rs6608462	+	A	A/C	single	intron	12	1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP,	2	0.967296
FMO3	chr1	171062192	171062193	rs16828308	+	T	C/T	single	intron	7	1000GENOMES,BUSHMAN,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.024329
FMO3	chr1	171062193	171062194	rs1736566	+	A	A/G	single	intron	10	1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,	2	0.904432
FMO3	chr1	171062247	171062248	rs2064075	+	A	A/C	single	intron	15	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.806507
FMO3	chr1	171062497	171062498	rs2064076	+	G	A/G	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.460151
FMO3	chr1	171062621	171062650	rs28745579	+	GTATTCCATGGTGTG	lengthTooLong	in-del	intron	1	EGP_SNPS,	2	0.045454
FMO3	chr1	171062650	171062651	rs28745580	+	C	C/T	single	intron	1	EGP_SNPS,	2	0.953488
FMO3	chr1	171062666	171062667	rs28745581	+	C	C/T	single	intron	5	1000GENOMES,BGI,EGP_SNPS,GMI,SSMP,	2	0.894511
FMO3	chr1	171062891	171062892	rs1795248	+	T	C/T	single	intron	16	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.616963
FMO3	chr1	171062995	171062996	rs12732215	+	G	A/G	single	intron	7	1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SSAHASNP,	2	0.317017
FMO3	chr1	171062997	171062998	rs115005124	+	G	G/T	single	intron	1	1000GENOMES,	2	0.874674
FMO3	chr1	171063027	171063028	rs7886526	+	G	G/T	single	intron	10	1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP,WI_SSAHASNP,	2	0.538813
FMO3	chr1	171063166	171063167	rs141433827	+	G	A/G	single	intron	2	1000GENOMES,TISHKOFF,	2	0.043159
FMO3	chr1	171063261	171063262	rs12059956	+	G	A/G	single	intron	15	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.359909
FMO3	chr1	171063522	171063523	rs28745582	+	T	C/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.018190
FMO3	chr1	171063550	171063551	rs28745584	+	A	A/T	single	intron	6	1000GENOMES,BGI,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.863790
FMO3	chr1	171063589	171063590	rs28745585	+	C	C/T	single	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.871199
FMO3	chr1	171063685	171063686	rs28745586	+	A	A/G	single	intron	4	1000GENOMES,EGP_SNPS,GMI,SSMP,	2	0.877327
FMO3	chr1	171063792	171063793	rs28745588	+	G	A/G	single	intron	6	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.127434
FMO3	chr1	171063801	171063802	rs28745589	+	T	C/T	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.030085
FMO3	chr1	171064005	171064007	rs28745591	+	GT	-/GT	deletion	intron	6	1000GENOMES,EGP_SNPS,GMI,LUNTER,SSMP,TISHKOFF,	2	0.127219
FMO3	chr1	171064224	171064225	rs28363526	+	T	C/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.025359
FMO3	chr1	171064703	171064704	rs28363527	+	A	A/G	single	intron	10	1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,SSMP,	2	0.778199
FMO3	chr1	171064873	171064873	rs200656733	+	-	-/TA	insertion	intron	1	1000GENOMES,	2	0.877870
FMO3	chr1	171064882	171064883	rs190685191	+	C	A/C	single	intron	1	1000GENOMES,	2	0.109275
FMO3	chr1	171064886	171064886	rs200715887	+	-	-/ATGA	insertion	intron	2	1000GENOMES,LUNTER,	2	0.895776
FMO3	chr1	171064905	171064906	rs183483206	+	T	G/T	single	intron	1	1000GENOMES,	2	0.029844
FMO3	chr1	171064924	171064925	rs188968306	+	A	A/C	single	intron	1	1000GENOMES,	2	0.974288
FMO3	chr1	171064980	171064981	rs193242440	+	A	A/T	single	intron	1	1000GENOMES,	2	0.943526
FMO3	chr1	171065002	171065003	rs182699086	+	T	C/T	single	intron	1	1000GENOMES,	2	0.033058
FMO3	chr1	171065015	171065016	rs186573324	+	A	A/T	single	intron	1	1000GENOMES,	2	0.939853
FMO3	chr1	171065078	171065079	rs191157225	+	T	A/T	single	intron	1	1000GENOMES,	2	0.100551
FMO3	chr1	171065119	171065120	rs184045854	+	G	A/G	single	intron	1	1000GENOMES,	2	0.105142
FMO3	chr1	171065181	171065182	rs188383573	+	T	A/T	single	intron	1	1000GENOMES,	2	0.063361
FMO3	chr1	171065270	171065271	rs192907268	+	G	G/T	single	intron	1	1000GENOMES,	2	0.751607
FMO3	chr1	171065291	171065292	rs185266583	+	G	G/T	single	intron	2	1000GENOMES,SSMP,	2	0.595960
FMO3	chr1	171065357	171065358	rs190527685	+	T	C/T	single	intron	1	1000GENOMES,	2	0.090450
FMO3	chr1	171065386	171065387	rs182299466	+	C	C/T	single	intron	1	1000GENOMES,	2	0.857208
FMO3	chr1	171065517	171065519	rs202101794	+	TA	-/TA	deletion	intron	1	1000GENOMES,	2	0.152893
FMO3	chr1	171065566	171065567	rs186348903	+	A	A/G	single	intron	1	1000GENOMES,	2	0.943526
FMO3	chr1	171065576	171065577	rs188347521	+	C	C/T	single	intron	1	1000GENOMES,	2	0.918733
FMO3	chr1	171065616	171065617	rs180710733	+	T	C/T	single	intron	1	1000GENOMES,	2	0.052801
FMO3	chr1	171065686	171065687	rs185723654	+	C	A/C	single	intron	1	1000GENOMES,	2	0.093205
FMO3	chr1	171065707	171065708	rs191417044	+	C	C/T	single	intron	1	1000GENOMES,	2	0.953168
FMO3	chr1	171065711	171065712	rs11580161	+	C	A/C	single	intron	4	1000GENOMES,CSHL-HAPMAP,PJP,SSMP,	2	0.236239
FMO3	chr1	171065711	171065713	rs200360778	+	CT	-/CT	deletion	intron	1	1000GENOMES,	2	0.039945
FMO3	chr1	171065732	171065733	rs186894091	+	C	C/T	single	intron	1	1000GENOMES,	2	0.841598
FMO3	chr1	171065770	171065771	rs192045829	+	A	A/C	single	intron	1	1000GENOMES,	2	0.956841
FMO3	chr1	171065810	171065811	rs183348524	+	A	A/T	single	intron	1	1000GENOMES,	2	0.896694
FMO3	chr1	171065813	171065814	rs187603784	+	T	G/T	single	intron	1	1000GENOMES,	2	0.040404
FMO3	chr1	171065940	171065941	rs11578651	+	G	G/T	single	intron	8	1000GENOMES,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSMP,	2	0.066271
FMO3	chr1	171066022	171066023	rs182050121	+	G	G/T	single	intron	1	1000GENOMES,	2	0.986226
FMO3	chr1	171066087	171066088	rs77873435	+	C	A/C/T	single	intron	4	1000GENOMES,ENSEMBL,GMI,PJP,	2	0.216117
FMO3	chr1	171066091	171066092	rs192885261	+	C	C/T	single	intron	2	1000GENOMES,GMI,	2	0.904959
FMO3	chr1	171066105	171066106	rs78245463	+	A	A/G	single	intron	5	1000GENOMES,ENSEMBL,GMI,PJP,SSMP,	2	0.569139
FMO3	chr1	171067007	171067008	rs28866833	+	G	A/G	single	intron	6	ABI,ENSEMBL,GMI,HUMANGENOME_JCVI,SSAHASNP,SSMP,	2	0.400000
FMO3	chr1	171067726	171067727	rs138733362	+	T	C/T	single	intron	4	1000GENOMES,GMI,PJP,SSMP,	2	0.326446
FMO3	chr1	171067840	171067841	rs12074485	+	T	C/T	single	intron	2	1000GENOMES,SC_SNP,	2	0.034894
FMO3	chr1	171068185	171068186	rs2204790	+	A	A/G	single	intron	11	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.823422
FMO3	chr1	171068190	171068191	rs2204791	+	C	C/T	single	intron	13	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.654163
FMO3	chr1	171068248	171068249	rs2205725	+	C	C/G	single	intron	13	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.654022
FMO3	chr1	171068249	171068250	rs1795239	+	G	A/G	single	intron	9	1000GENOMES,ABI,BCM_SSAHASNP,GMI,HGSV,SC_JCM,SEQUENOM,SSMP,TISHKOFF,	2	0.094867
FMO3	chr1	171068751	171068756	rs201557815	+	AAAAG	-/AAAAG	deletion	intron	1	1000GENOMES,	2	0.012856
FMO3	chr1	171068843	171068844	rs114446469	+	T	C/T	single	intron	1	1000GENOMES,	2	0.024826
FMO3	chr1	171068881	171068882	rs67727346	+	C	C/T	single	intron,near-gene-5	8	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,TISHKOFF,	2	0.478738
FMO3	chr1	171069028	171069029	rs28363528	+	G	A/G	single	intron,near-gene-5	4	1000GENOMES,EGP_SNPS,GMI,SSMP,	2	0.124681
FMO3	chr1	171069087	171069088	rs28363530	+	G	A/G	single	intron,near-gene-5	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.126904
FMO3	chr1	171069156	171069157	rs1920137	+	A	A/C	single	intron,near-gene-5	13	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL,	2	0.542194
FMO3	chr1	171069958	171069959	rs12076145	+	A	A/G	single	intron,near-gene-5	14	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.523667
FMO3	chr1	171069981	171069982	rs74602385	+	A	A/G	single	intron,near-gene-5	3	1000GENOMES,ILLUMINA,SSMP,	2	0.987144
FMO3	chr1	171070088	171070089	rs112371364	+	A	A/G	single	intron,near-gene-5	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.987615
FMO3	chr1	171070175	171070176	rs74319242	+	G	G/T	single	intron,near-gene-5	4	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,MPI_MOLGEN,	2	0.973853
FMO3	chr1	171070471	171070472	rs12404455	+	G	G/T	single	intron,near-gene-3,near-gene-5	9	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,SSMP,TISHKOFF,	2	0.892692
FMO3	chr1	171070795	171070796	rs79111056	+	C	A/C	single	intron,near-gene-3,near-gene-5	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.012385
FMO3	chr1	171071481	171071482	rs72712649	+	T	A/T	single	intron,near-gene-5	6	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF,	2	0.131410
FMO3	chr1	171071542	171071543	rs12072547	+	T	A/T	single	intron,near-gene-5	13	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.344718
FMO3	chr1	171071847	171071848	rs28363533	+	G	C/G	single	intron,near-gene-5	7	1000GENOMES,BGI,BUSHMAN,EGP_SNPS,GMI,HGSV,SSMP,	2	0.102239
FMO3	chr1	171071882	171071883	rs10911192	+	A	A/C	single	intron,near-gene-5	21	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.458189
FMO3	chr1	171071973	171071974	rs12072717	+	T	C/T	single	intron,near-gene-5	12	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.353659
FMO3	chr1	171072235	171072236	rs12403297	+	G	A/G	single	intron,near-gene-5	10	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,SSMP,TISHKOFF,	2	0.133024
FMO3	chr1	171072317	171072318	rs1983550	+	G	A/G	single	intron,near-gene-5	6	1000GENOMES,BGI,EGP_SNPS,GMI,SSMP,TSC-CSHL,	2	0.102292
FMO3	chr1	171072582	171072584	rs28363534	+	CA	-/CA	deletion	intron,near-gene-5	4	1000GENOMES,EGP_SNPS,LUNTER,TISHKOFF,	2	0.011441
FMO3	chr1	171072607	171072608	rs10911238	+	A	A/T	single	intron,near-gene-5	13	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.825316
FMO3	chr1	171072797	171072798	rs28363535	+	G	A/G	single	intron,near-gene-5	6	1000GENOMES,BGI,BUSHMAN,EGP_SNPS,GMI,SSMP,	2	0.101868
FMO3	chr1	171072804	171072805	rs199878858	+	C	C/T	single	intron,near-gene-5	1	CLNPGX_UU,	2	0.986014
FMO3	chr1	171072861	171072862	rs28363536	+	G	G/T	single	intron,near-gene-5	8	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.869547
FMO3	chr1	171073251	171073252	rs28363537	+	G	A/G	single	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.130565
FMO3	chr1	171073577	171073578	rs66963071	+	A	A/C	single	intron	4	1000GENOMES,BGI,GMI,SSMP,	2	0.899090
FMO3	chr1	171073970	171073971	rs151072108	+	C	C/T	single	intron	2	1000GENOMES,MPI_MOLGEN,	2	0.981175
FMO3	chr1	171074001	171074002	rs112505692	+	G	A/G	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF,	2	0.131072
FMO3	chr1	171074176	171074177	rs79298244	+	T	G/T	single	intron	2	1000GENOMES,MPI_MOLGEN,	2	0.018712
FMO3	chr1	171074202	171074203	rs77882099	+	T	A/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,GMI,	2	0.126606
FMO3	chr1	171074202	171074202	rs201638516	+	-	-/A	insertion	intron	2	1000GENOMES,GMI,	2	0.869605
FMO3	chr1	171074206	171074206	rs35625940	+	-	-/A	insertion	intron	4	1000GENOMES,ABI,GMI,LUNTER,	2	0.524334
FMO3	chr1	171075140	171075142	rs28363539	+	AA	-/AA	deletion	intron	7	1000GENOMES,ABI,BGI,EGP_SNPS,GMI,LUNTER,SSMP,	2	0.154255
FMO3	chr1	171075144	171075146	rs200232134	+	AC	-/AC	deletion	intron	1	1000GENOMES,	2	0.115702
FMO3	chr1	171075195	171075196	rs28745592	+	T	-/T	deletion	intron	3	1000GENOMES,EGP_SNPS,LUNTER,	2	0.019882
FMO3	chr1	171075293	171075294	rs28745593	+	G	A/G/T	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.020693
FMO3	chr1	171075350	171075351	rs10911320	+	G	A/G	single	intron	13	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.218908
FMO3	chr1	171075406	171075407	rs28363540	+	A	A/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.981841
FMO3	chr1	171075463	171075464	rs28363541	+	A	A/G	single	intron	6	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.867062
FMO3	chr1	171075555	171075556	rs10797877	+	C	C/T	single	intron	16	1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.499789
FMO3	chr1	171075559	171075560	rs28363542	+	C	C/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.981718
FMO3	chr1	171075575	171075576	rs10797878	+	T	C/T	single	intron	17	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.341927
FMO3	chr1	171075809	171075811	rs148261088	+	AC	-/AC	deletion	intron	2	1000GENOMES,LUNTER,	2	0.015611
FMO3	chr1	171075812	171075814	rs28363543	+	CA	-/CA	deletion	intron	2	BUSHMAN,EGP_SNPS,	2	0.026042
FMO3	chr1	171075996	171075997	rs1080197	+	T	C/T	single	intron	12	1000GENOMES,ABI,BUSHMAN,DEVINE_LAB,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TSC-CSHL,	2	0.116740
FMO3	chr1	171076337	171076338	rs6608463	+	C	C/T	single	intron	10	1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA-UK,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP,	2	0.978481
FMO3	chr1	171076739	171076740	rs28363545	+	T	C/T	single	intron	6	1000GENOMES,BGI,EGP_SNPS,GMI,HGSV,SSMP,	2	0.123624
FMO3	chr1	171077038	171077041	rs143661234	+	TCT	-/TCT	deletion	intron	5	1000GENOMES,GMI,LUNTER,SSMP,WARNICH_LAB,	2	0.120753
FMO3	chr1	171077042	171077043	rs3832023	+	C	-/C/CTT	in-del	intron,cds-indel	6	1000GENOMES,CLNPGX_UU,DEVINE_LAB,EGP_SNPS,HGSV,YUSUKE,	2	0.120559
FMO3	chr1	171077164	171077165	rs2066529	+	G	A/G	single	intron	13	1000GENOMES,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGBASE,PERLEGEN,SI_EXO,SSMP,TISHKOFF,UWGC,YUSUKE,	2	0.133027
FMO3	chr1	171077197	171077198	rs1920149	+	G	A/G	single	intron	27	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SC_SNP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,UWGC,YUSUKE,	2	0.516375
FMO3	chr1	171077371	171077372	rs2066534	+	C	C/G	single	intron	25	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,PJP,SC_SNP,SI_EXO,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,UWGC,	2	0.829694
FMO3	chr1	171077502	171077503	rs28363550	+	C	-/C	deletion	intron	6	1000GENOMES,EGP_SNPS,GMI,LUNTER,SSMP,TISHKOFF,	2	0.131134
FMO3	chr1	171077506	171077507	rs200758892	+	A	-/A	deletion	intron	1	1000GENOMES,	2	0.066116
FMO3	chr1	171077674	171077675	rs28363552	+	G	A/G	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.018190
FMO3	chr1	171077763	171077764	rs28363553	+	A	A/G	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.979290
FMO3	chr1	171077781	171077782	rs10797894	+	A	A/C	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.812791
FMO3	chr1	171077899	171077900	rs28363554	+	G	C/G	single	intron	4	1000GENOMES,EGP_SNPS,HGSV,TISHKOFF,	2	0.010970
FMO3	chr1	171078568	171078569	rs1736556	+	C	C/G	single	intron	21	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.361252
FMO3	chr1	171078833	171078834	rs28363557	+	C	C/T	single	intron	5	1000GENOMES,BUSHMAN,EGP_SNPS,GMI,SSMP,	2	0.893266
FMO3	chr1	171078977	171078978	rs28363558	+	C	C/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.981811
FMO3	chr1	171079004	171079005	rs16864042	+	G	G/T	single	intron	13	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.638212
FMO3	chr1	171079228	171079229	rs28363560	+	C	C/T	single	intron	5	1000GENOMES,BGI,EGP_SNPS,GMI,SSMP,	2	0.898046
FMO3	chr1	171079458	171079459	rs28363562	+	C	C/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.978353
FMO3	chr1	171079548	171079549	rs2235192	+	C	A/C	single	intron	17	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.352463
FMO3	chr1	171079550	171079551	rs28363563	+	A	A/G	single	intron	4	1000GENOMES,BGI,EGP_SNPS,GMI,	2	0.980017
FMO3	chr1	171079699	171079700	rs7051320	+	C	C/T	single	intron	11	1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,	2	0.942107
FMO3	chr1	171079927	171079928	rs201838898	+	T	C/T	single	intron	1	CLNPGX_UU,	2	0.013513
FMO3	chr1	171080484	171080485	rs2075992	+	C	C/T	single	intron	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.354335
FMO3	chr1	171080614	171080615	rs7061710	+	G	C/G	single	intron	13	1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.251627
FMO3	chr1	171080628	171080629	rs2281002	+	C	A/C	single	intron	8	1000GENOMES,AFFY,BGI,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,SSMP,YUSUKE,	2	0.104266
FMO3	chr1	171080732	171080733	rs28363570	+	C	C/T	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.976903
FMO3	chr1	171080956	171080957	rs7062331	+	G	A/G	single	intron	6	1000GENOMES,BCM_SSAHASNP,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,TISHKOFF,	2	0.031031
FMO3	chr1	171081142	171081143	rs28363571	+	G	A/G	single	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.133845
FMO3	chr1	171081837	171081838	rs28363575	+	A	A/G	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.979237
FMO3	chr1	171081984	171081984	rs61701642	+	-	-/C	insertion	intron	12	1000GENOMES,BGI,BILGI_BIOE,BL,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,	2	0.000000
FMO3	chr1	171082647	171082648	rs76575647	+	C	C/T	single	intron	2	1000GENOMES,MPI_MOLGEN,	2	0.986510
FMO3	chr1	171082758	171082759	rs12073562	+	G	G/T	single	intron	7	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF,	2	0.982599
FMO3	chr1	171082895	171082896	rs909529	+	C	C/T	single	intron	10	1000GENOMES,BGI,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,YUSUKE,	2	0.874192
FMO3	chr1	171082953	171082954	rs16864050	+	G	A/G	single	intron	6	1000GENOMES,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.015744
FMO3	chr1	171083536	171083537	rs909531	+	T	C/T	single	intron	18	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,GMI,HGBASE,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,UWGC,	2	0.217603
FMO3	chr1	171083713	171083714	rs909532	+	C	C/T	single	intron	11	1000GENOMES,ABI,BGI,BUSHMAN,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,TSC-CSHL,	2	0.877931
FMO3	chr1	171083846	171083847	rs28363583	+	A	A/G	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.975000
FMO3	chr1	171083881	171083882	rs74854600	+	T	C/T	single	intron	2	1000GENOMES,MPI_MOLGEN,	2	0.013490
FMO3	chr1	171083887	171083888	rs28363584	+	C	C/T	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.959322
FMO3	chr1	171084148	171084149	rs12405599	+	G	G/T	single	intron	12	1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.881091
FMO3	chr1	171084160	171084161	rs2236872	+	G	A/G	single	intron	14	1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA-UK,PERLEGEN,SSMP,TISHKOFF,YUSUKE,	2	0.332935
FMO3	chr1	171084241	171084242	rs12406572	+	C	A/C	single	intron	13	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,	2	0.223355
FMO3	chr1	171084531	171084532	rs28363588	+	T	-/T	deletion	intron	3	1000GENOMES,EGP_SNPS,LUNTER,	2	0.020495
FMO3	chr1	171084571	171084572	rs28363589	+	G	A/G	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.015825
FMO3	chr1	171084711	171084712	rs2236873	+	A	A/T	single	intron	12	1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA-UK,PERLEGEN,SSMP,TISHKOFF,YUSUKE,	2	0.662542
FMO3	chr1	171084712	171084713	rs28363590	+	C	A/C	single	intron	10	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF,	2	0.178374
FMO3	chr1	171084953	171084954	rs116805194	+	G	G/T	single	intron	2	1000GENOMES,MPI_MOLGEN,	2	0.986075
FMO3	chr1	171085314	171085314	rs2066528	+	-	-/T	insertion	intron	12	1000GENOMES,BGI,BUSHMAN,DEVINE_LAB,EGP_SNPS,GMI,HGBASE,HGSV,LUNTER,SSMP,TISHKOFF,UWGC,	2	0.664222
FMO3	chr1	171085581	171085582	rs16864066	+	C	C/T	single	intron	6	1000GENOMES,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.974066
FMO3	chr1	171085645	171085646	rs1736559	+	G	G/T	single	intron	10	1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SC_JCM,SSMP,TISHKOFF,YUSUKE,	2	0.901809
FMO3	chr1	171085676	171085677	rs17564980	+	C	C/T	single	intron	10	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.881526
FMO3	chr1	171085843	171085844	rs28363592	+	G	A/G	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.015691
FMO3	chr1	171085913	171085914	rs12085248	+	T	C/T	single	intron	7	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,SC_SNP,TISHKOFF,	2	0.056167
FMO3	chr1	171086079	171086080	rs28363593	+	G	G/T	single	intron	5	1000GENOMES,BUSHMAN,EGP_SNPS,ILLUMINA-UK,TISHKOFF,	2	0.980607
FMO3	chr1	171086183	171086184	rs28363594	+	T	C/T	single	intron	4	1000GENOMES,BUSHMAN,EGP_SNPS,TISHKOFF,	2	0.012236
KDM1A	chr1	23346648	23346649	rs148150162	+	G	A/G	single	intron	2	1000GENOMES,ILLUMINA,	2	0.010101
KDM1A	chr1	23347124	23347125	rs1413974	+	C	C/T	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,YUSUKE,	2	0.654899
KDM1A	chr1	23348827	23348827	rs201642314	+	-	-/G	insertion	intron	1	1000GENOMES,	2	0.983012
KDM1A	chr1	23349127	23349128	rs647551	+	T	C/T	single	intron	15	1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,TISHKOFF,WI_SSAHASNP,	2	0.747604
KDM1A	chr1	23349528	23349529	rs12737238	+	T	G/T	single	intron	1	SSAHASNP,	2	0.876405
KDM1A	chr1	23349535	23349536	rs493155	-	G	C/T	single	intron	5	1000GENOMES,ABI,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,	2	0.984862
KDM1A	chr1	23349870	23349871	rs116086480	+	T	G/T	single	intron	2	1000GENOMES,TISHKOFF,	2	0.025261
KDM1A	chr1	23350126	23350127	rs576925	-	A	A/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,	2	0.014220
KDM1A	chr1	23350653	23350654	rs138534510	+	T	-/T	deletion	intron	3	1000GENOMES,LUNTER,TISHKOFF,	2	0.024334
KDM1A	chr1	23351538	23351539	rs12057276	+	G	A/G	single	intron	5	1000GENOMES,BUSHMAN,PJP,SC_SNP,TISHKOFF,	2	0.036609
KDM1A	chr1	23351939	23351940	rs113289593	+	C	C/G	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,	2	0.985780
KDM1A	chr1	23352165	23352166	rs6683468	+	A	A/C	single	intron	7	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA,KRIBB_YJKIM,PJP,TISHKOFF,	2	0.953343
KDM1A	chr1	23352297	23352298	rs76830165	+	A	A/G	single	intron	2	1000GENOMES,ILLUMINA,	2	0.978242
KDM1A	chr1	23352888	23352888	rs144940081	+	-	-/GTT/TT/TTG	insertion	intron,cds-indel	4	1000GENOMES,BILGI_BIOE,GMI,PJP,	2	0.298439
KDM1A	chr1	23352889	23352889	rs67713820	+	-	-/GTT/TG/TTG	insertion	intron,cds-indel	5	1000GENOMES,BGI,BUSHMAN,DEVINE_LAB,SSMP,	2	0.302294
KDM1A	chr1	23353767	23353768	rs74470274	+	C	C/T	single	intron	2	1000GENOMES,TISHKOFF,	2	0.957317
KDM1A	chr1	23353818	23353819	rs74355150	+	C	A/C	single	intron	2	1000GENOMES,GMI,	2	0.036989
KDM1A	chr1	23354813	23354814	rs12128178	+	C	C/T	single	intron	15	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PJP,SC_SNP,SSAHASNP,SSMP,	2	0.617002
KDM1A	chr1	23354876	23354877	rs7548692	+	T	A/T	single	intron	14	1000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.289110
KDM1A	chr1	23355951	23355952	rs591764	-	G	A/C	single	intron	6	1000GENOMES,ABI,COMPLETE_GENOMICS,KWOK,SC_JCM,TISHKOFF,	2	0.015138
KDM1A	chr1	23356257	23356258	rs6659638	+	G	C/G	single	intron	3	1000GENOMES,BCM_SSAHASNP,TISHKOFF,	2	0.033058
KDM1A	chr1	23356863	23356864	rs10799788	+	G	A/G	single	intron	17	1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.281607
KDM1A	chr1	23357281	23357282	rs6682560	+	A	A/T	single	intron	5	1000GENOMES,BCM_SSAHASNP,GMI,ILLUMINA-UK,SSMP,	2	0.897706
KDM1A	chr1	23357482	23357483	rs78636248	+	A	A/G	single	intron	1	1000GENOMES,	2	0.989983
KDM1A	chr1	23358027	23358028	rs17369793	+	T	G/T	single	intron	3	1000GENOMES,ILLUMINA,PERLEGEN,	2	0.018998
KDM1A	chr1	23358999	23358999	rs5773031	+	-	-/G	insertion	intron	10	1000GENOMES,ABI,BILGI_BIOE,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,	2	0.618807
KDM1A	chr1	23359599	23359600	rs10917345	+	A	A/G	single	intron	13	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.237443
KDM1A	chr1	23359789	23359790	rs7555529	+	G	A/G	single	intron	9	1000GENOMES,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.281722
KDM1A	chr1	23360222	23360223	rs12117752	+	T	C/T	single	intron	15	1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,	2	0.380482
KDM1A	chr1	23360264	23360265	rs10799789	+	G	A/G	single	intron	20	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.733188
KDM1A	chr1	23360615	23360616	rs75702621	+	A	A/G	single	intron	2	1000GENOMES,TISHKOFF,	2	0.958624
KDM1A	chr1	23360643	23360643	rs139969274	+	-	-/T	insertion	intron	3	1000GENOMES,LUNTER,TISHKOFF,	2	0.985308
KDM1A	chr1	23360695	23360696	rs116787935	+	T	C/T	single	intron	1	1000GENOMES,	2	0.010017
KDM1A	chr1	23361013	23361013	rs146716432	+	-	-/A	insertion	intron	3	1000GENOMES,LUNTER,TISHKOFF,	2	0.965565
KDM1A	chr1	23361957	23361958	rs144044398	+	G	A/G	single	intron	2	1000GENOMES,TISHKOFF,	2	0.034435
KDM1A	chr1	23362687	23362688	rs669731	+	A	A/C	single	intron	6	1000GENOMES,AFFY,COMPLETE_GENOMICS,KRIBB_YJKIM,SC_JCM,TISHKOFF,	2	0.974760
KDM1A	chr1	23363043	23363044	rs671357	+	G	A/G	single	intron	21	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.795019
KDM1A	chr1	23363614	23363614	rs199672006	+	-	-/AT	insertion	intron	1	1000GENOMES,	2	0.949954
KDM1A	chr1	23363621	23363622	rs590356	+	T	C/T	single	intron	6	1000GENOMES,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_JCM,WI_SSAHASNP,	2	0.060037
KDM1A	chr1	23363776	23363777	rs143982504	+	A	A/C	single	intron	2	1000GENOMES,TISHKOFF,	2	0.966024
KDM1A	chr1	23364206	23364207	rs117438260	+	A	A/C	single	intron	2	1000GENOMES,SSMP,	2	0.986075
KDM1A	chr1	23364918	23364919	rs4654834	+	T	C/T	single	intron	19	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.424861
KDM1A	chr1	23365183	23365184	rs686663	+	A	A/G	single	intron	21	1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.209218
KDM1A	chr1	23366697	23366698	rs72875357	+	T	C/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,	2	0.015138
KDM1A	chr1	23366883	23366884	rs1123021	-	A	C/T	single	intron	12	1000GENOMES,ABI,DEVINE_LAB,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,	2	0.103181
KDM1A	chr1	23367137	23367138	rs1984576	-	A	C/T	single	intron	15	1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.437986
KDM1A	chr1	23367472	23367473	rs9919326	+	C	C/G	single	intron	3	1000GENOMES,BCM_SSAHASNP,TISHKOFF,	2	0.959059
KDM1A	chr1	23368127	23368128	rs7519326	+	G	A/G	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,WI_SSAHASNP,	2	0.023394
KDM1A	chr1	23368281	23368281	rs146205896	+	-	-/A	insertion	intron	4	1000GENOMES,GMI,LUNTER,SSMP,	2	0.928375
KDM1A	chr1	23368337	23368337	rs144803602	+	-	-/A	insertion	intron	2	1000GENOMES,LUNTER,	2	0.966942
KDM1A	chr1	23368461	23368462	rs10737471	+	A	A/G	single	intron	19	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.273100
KDM1A	chr1	23368466	23368467	rs114072618	+	T	G/T	single	intron	1	1000GENOMES,	2	0.010453
KDM1A	chr1	23369120	23369121	rs61333895	+	A	A/G	single	intron,near-gene-5	2	1000GENOMES,HGSV,	2	0.943067
KDM1A	chr1	23369276	23369277	rs137993948	+	T	G/T	single	intron,near-gene-5	3	1000GENOMES,SSMP,TISHKOFF,	2	0.102388
KDM1A	chr1	23369507	23369508	rs616501	+	A	A/C	single	intron,near-gene-5	14	1000GENOMES,BGI,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,WI_SSAHASNP,	2	0.220293
KDM1A	chr1	23371607	23371608	rs587168	+	A	A/C	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.262956
KDM1A	chr1	23371920	23371921	rs10489564	-	G	C/T	single	intron	9	1000GENOMES,AFFY,BUSHMAN,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SC_SNP,TISHKOFF,	2	0.955959
KDM1A	chr1	23372172	23372173	rs115368683	+	T	G/T	single	intron	1	1000GENOMES,	2	0.016986
KDM1A	chr1	23372770	23372771	rs2294518	-	T	A/G	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,WI_SSAHASNP,YUSUKE,	2	0.651871
KDM1A	chr1	23372880	23372881	rs4655144	+	A	A/T	single	intron	19	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.027273
KDM1A	chr1	23373690	23373691	rs139448894	+	A	-/A	deletion	intron	4	1000GENOMES,LUNTER,SSMP,TISHKOFF,	2	0.016988
KDM1A	chr1	23373745	23373746	rs61336240	+	G	A/G	single	intron	5	1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.058203
KDM1A	chr1	23373838	23373839	rs598197	-	A	G/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,	2	0.014220
KDM1A	chr1	23374413	23374414	rs7528562	+	A	A/C	single	intron	3	1000GENOMES,SC_SNP,WI_SSAHASNP,	2	0.972452
KDM1A	chr1	23374628	23374629	rs2143156	-	T	A/C	single	intron	12	1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA-UK,PJP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.710165
KDM1A	chr1	23374925	23374926	rs114889658	+	A	A/T	single	intron	1	1000GENOMES,	2	0.977352
KDM1A	chr1	23374925	23374926	rs201135793	+	A	-/A	deletion	intron	1	1000GENOMES,	2	0.010560
KDM1A	chr1	23374950	23374951	rs649648	+	A	A/G	single	intron	21	1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.221769
KDM1A	chr1	23375107	23375108	rs10753552	+	C	C/T	single	intron	19	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.270159
KDM1A	chr1	23375466	23375467	rs199648094	+	C	-/C	deletion	intron	3	1000GENOMES,LUNTER,TISHKOFF,	2	0.014692
KDM1A	chr1	23375692	23375693	rs5027299	+	A	A/G	single	intron	11	1000GENOMES,ABI,AFFY,BUSHMAN,DEVINE_LAB,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,TISHKOFF,WI_SSAHASNP,	2	0.918599
KDM1A	chr1	23375925	23375927	rs71893737	+	AT	-/AT	deletion	intron	3	1000GENOMES,DEVINE_LAB,LUNTER,	2	0.014692
KDM1A	chr1	23376003	23376004	rs4545309	+	C	C/T	single	intron	5	1000GENOMES,ABI,DEVINE_LAB,SC_JCM,SC_SNP,	2	0.971534
KDM1A	chr1	23376190	23376191	rs78340593	+	A	A/G	single	intron	2	1000GENOMES,ILLUMINA-UK,	2	0.987615
KDM1A	chr1	23376232	23376233	rs6680974	+	A	A/G	single	intron	12	1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA-UK,PJP,SSMP,	2	0.718007
KDM1A	chr1	23376344	23376345	rs72657821	+	T	C/T	single	intron	2	1000GENOMES,SSMP,	2	0.046319
KDM1A	chr1	23376540	23376541	rs10917347	+	T	G/T	single	intron	16	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSMP,	2	0.236441
KDM1A	chr1	23376559	23376560	rs12074836	+	T	C/T	single	intron	3	1000GENOMES,SC_SNP,TISHKOFF,	2	0.036585
KDM1A	chr1	23376672	23376673	rs12078443	+	G	A/G	single	intron	5	1000GENOMES,BUSHMAN,ILLUMINA-UK,SC_SNP,TISHKOFF,	2	0.058203
KDM1A	chr1	23377580	23377580	rs201778126	+	-	-/A	insertion	intron	2	1000GENOMES,SSMP,	2	0.978421
KDM1A	chr1	23378626	23378627	rs559431	-	T	A/G	single	intron	22	1000GENOMES,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,YUSUKE,	2	0.223238
KDM1A	chr1	23379249	23379250	rs7529938	+	T	C/T	single	intron	4	1000GENOMES,BUSHMAN,TISHKOFF,WI_SSAHASNP,	2	0.037173
KDM1A	chr1	23379468	23379469	rs117174958	+	T	C/T	single	intron	3	1000GENOMES,GMI,SSMP,	2	0.011749
KDM1A	chr1	23380107	23380108	rs694839	+	G	G/T	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,	2	0.984862
KDM1A	chr1	23380197	23380198	rs579785	-	A	C/T	single	intron	21	1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.790814
KDM1A	chr1	23380782	23380783	rs574530	-	A	C/T	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,WI_SSAHASNP,	2	0.015138
KDM1A	chr1	23381027	23381028	rs78415141	+	G	C/G	single	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.034419
KDM1A	chr1	23381115	23381116	rs7543975	+	G	A/G	single	intron	16	1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.293920
KDM1A	chr1	23382400	23382400	rs142119400	+	-	-/T	insertion	intron	2	1000GENOMES,LUNTER,	2	0.971534
KDM1A	chr1	23382728	23382729	rs763310	+	A	A/G	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.208494
KDM1A	chr1	23382835	23382836	rs72875371	+	C	C/G	single	intron	2	1000GENOMES,COMPLETE_GENOMICS,	2	0.985780
KDM1A	chr1	23383255	23383256	rs78127835	+	A	A/G	single	intron	2	1000GENOMES,TISHKOFF,	2	0.957753
KDM1A	chr1	23383703	23383704	rs11806664	+	G	A/G	single	intron	19	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.706333
KDM1A	chr1	23384184	23384185	rs28663624	+	A	A/G	single	intron,near-gene-3	5	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSAHASNP,TISHKOFF,	2	0.984862
KDM1A	chr1	23384536	23384537	rs2869044	-	C	A/G	single	intron,near-gene-5	20	1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.705079
KDM1A	chr1	23384755	23384756	rs1984978	+	G	A/G	single	intron,near-gene-5	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.722678
KDM1A	chr1	23384835	23384836	rs2007023	+	T	C/T	single	intron,near-gene-5	16	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.743730
KDM1A	chr1	23385823	23385825	rs200504041	+	CT	-/CT	deletion	intron,near-gene-5	1	1000GENOMES,	2	0.283747
KDM1A	chr1	23385826	23385828	rs79588010	+	TT	-/TT	deletion	intron,near-gene-5	6	1000GENOMES,BUSHMAN,GMI,LUNTER,SSMP,TISHKOFF,	2	0.286893
KDM1A	chr1	23386165	23386166	rs998894	-	T	A/G	single	intron,near-gene-5	16	1000GENOMES,ABI,AFFY,BUSHMAN,CSHL-HAPMAP,ENSEMBL,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SC_JCM,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.919919
KDM1A	chr1	23386319	23386320	rs12081529	+	T	C/T	single	intron,near-gene-5	5	1000GENOMES,AFFY,KRIBB_YJKIM,SC_SNP,TISHKOFF,	2	0.050923
KDM1A	chr1	23386752	23386753	rs72657824	+	A	A/G	single	intron	3	1000GENOMES,ILLUMINA,SSMP,	2	0.951697
KDM1A	chr1	23387833	23387834	rs61256955	+	G	G/T	single	intron	4	1000GENOMES,HGSV,ILLUMINA,TISHKOFF,	2	0.963850
KDM1A	chr1	23387834	23387835	rs481877	+	C	C/T	single	intron	7	1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,KRIBB_YJKIM,SC_JCM,TISHKOFF,	2	0.977318
KDM1A	chr1	23387941	23387942	rs146066631	+	T	G/T	single	intron	3	1000GENOMES,ILLUMINA,SSMP,	2	0.010560
KDM1A	chr1	23388031	23388032	rs34092336	+	G	A/G	single	intron	7	1000GENOMES,ABI,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,SSMP,	2	0.086081
KDM1A	chr1	23388259	23388260	rs649377	-	G	C/T	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,	2	0.984862
KDM1A	chr1	23388312	23388313	rs145607556	+	C	C/T	single	intron	1	1000GENOMES,	2	0.982553
KDM1A	chr1	23388935	23388936	rs79239858	+	C	C/T	single	intron	2	1000GENOMES,SSMP,	2	0.982594
KDM1A	chr1	23389466	23389467	rs75645451	+	G	A/G	single	intron	2	1000GENOMES,ILLUMINA,	2	0.028721
KDM1A	chr1	23389539	23389540	rs79097771	+	C	A/C	single	intron	2	1000GENOMES,ILLUMINA,	2	0.016536
KDM1A	chr1	23389690	23389690	rs374128181	+	-	-/GC/GG	insertion	intron	2	1000GENOMES,DEVINE_LAB,	2	0.858586
KDM1A	chr1	23389691	23389692	rs112667286	+	G	C/G	single	intron	2	1000GENOMES,BUSHMAN,	2	0.039450
KDM1A	chr1	23389691	23389691	rs201069091	+	-	-/C	insertion	intron	1	1000GENOMES,	2	0.934803
KDM1A	chr1	23389882	23389883	rs115565522	+	A	A/G	single	intron	1	1000GENOMES,	2	0.989983
KDM1A	chr1	23390298	23390299	rs10753553	+	T	A/T	single	intron	18	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.728721
KDM1A	chr1	23390643	23390644	rs2294517	-	A	C/T	single	intron	17	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.781222
KDM1A	chr1	23391168	23391169	rs544442	-	T	A/G	single	intron	5	1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,	2	0.948165
KDM1A	chr1	23391774	23391775	rs2235549	-	G	A/C	single	intron	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.734327
KDM1A	chr1	23392995	23392996	rs7512264	+	T	A/T	single	intron	9	1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SC_SNP,TISHKOFF,WI_SSAHASNP,	2	0.054292
KDM1A	chr1	23394061	23394062	rs2235548	-	G	C/T	single	intron	11	1000GENOMES,BGI,BL,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA-UK,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.718464
KDM1A	chr1	23394567	23394568	rs78066989	+	T	C/T	single	intron	1	1000GENOMES,	2	0.010017
KDM1A	chr1	23395954	23395955	rs656053	+	A	A/C	single	intron	16	1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,YUSUKE,	2	0.212301
KDM1A	chr1	23396082	23396083	rs114211755	+	T	C/T	single	intron	2	1000GENOMES,ILLUMINA,	2	0.010017
KDM1A	chr1	23396273	23396274	rs721530	+	C	C/T	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	3	0.291648
KDM1A	chr1	23396273	23396274	rs376670064	+	C	-/C/T	in-del	intron	2	ABI,KRIBB_YJKIM,	2	0.252099
KDM1A	chr1	23397096	23397097	rs6668936	+	C	C/T	single	intron	5	1000GENOMES,BCM_SSAHASNP,PJP,SC_SNP,TISHKOFF,	2	0.966024
KDM1A	chr1	23397249	23397250	rs10917348	+	G	A/G	single	intron	4	1000GENOMES,PJP,SC_SNP,TISHKOFF,	2	0.034894
KDM1A	chr1	23397652	23397653	rs592963	+	A	A/G	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,	2	0.984862
KDM1A	chr1	23397937	23397938	rs116143248	+	C	C/G	single	intron	2	1000GENOMES,TISHKOFF,	2	0.975610
KDM1A	chr1	23398064	23398065	rs12409321	+	C	C/T	single	intron	15	1000GENOMES,ABI,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PERLEGEN,PJP,SSAHASNP,SSMP,	2	0.615681
KDM1A	chr1	23398106	23398107	rs117880319	+	A	A/G	single	intron	4	1000GENOMES,GMI,ILLUMINA,SSMP,	2	0.987815
KDM1A	chr1	23398576	23398577	rs549656	-	G	C/G	single	intron	7	1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,NHLBI-ESP,SC_JCM,TISHKOFF,	2	0.984890
KDM1A	chr1	23399329	23399330	rs576981	+	C	C/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,	2	0.985780
KDM1A	chr1	23399931	23399932	rs967605	-	C	A/G	single	intron	21	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.787080
KDM1A	chr1	23400968	23400969	rs1952527	-	T	A/G	single	intron	12	1000GENOMES,ABI,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,	2	0.664684
KDM1A	chr1	23400971	23400972	rs1329282	-	T	A/G	single	intron	16	1000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.261384
KDM1A	chr1	23401256	23401257	rs116236973	+	T	C/T	single	intron	2	1000GENOMES,TISHKOFF,	2	0.010017
KDM1A	chr1	23401681	23401682	rs6426783	+	G	A/G	single	intron	9	1000GENOMES,AFFY,BCM_SSAHASNP,GMI,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.104907
KDM1A	chr1	23401765	23401766	rs12085556	+	G	C/G	single	intron	3	1000GENOMES,SC_SNP,TISHKOFF,	2	0.033513
KDM1A	chr1	23402018	23402019	rs2869038	-	G	C/T	single	intron	14	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.282450
KDM1A	chr1	23402440	23402440	rs202041889	+	-	-/A	insertion	intron	1	1000GENOMES,	2	0.975207
KDM1A	chr1	23402789	23402793	rs149580280	+	AAGT	-/AAGT	deletion	intron	2	1000GENOMES,LUNTER,	2	0.021120
KDM1A	chr1	23403097	23403097	rs34495254	+	-	-/C	insertion	intron	6	1000GENOMES,ABI,GMI,LUNTER,SSMP,TISHKOFF,	2	0.721763
KDM1A	chr1	23403147	23403148	rs476033	+	G	A/G	single	intron	6	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,SC_JCM,TSC-CSHL,	2	0.023906
KDM1A	chr1	23403284	23403286	rs3972658	-	TC	-/GA	in-del	intron	3	1000GENOMES,LUNTER,TSC-CSHL,	2	0.013315
KDM1A	chr1	23403653	23403654	rs74062856	+	C	C/T	single	intron	4	1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.988532
KDM1A	chr1	23403935	23403936	rs28675208	+	A	A/C	single	intron	4	1000GENOMES,BUSHMAN,SSAHASNP,TISHKOFF,	2	0.965628
KDM1A	chr1	23404670	23404671	rs4655145	+	A	A/G	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.206349
KDM1A	chr1	23405793	23405794	rs2072945	-	A	G/T	single	intron	19	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.785098
KDM1A	chr1	23405804	23405805	rs114189394	+	G	A/G	single	intron	1	1000GENOMES,	2	0.015244
KDM1A	chr1	23405864	23405865	rs72657829	+	A	A/C	single	intron	2	1000GENOMES,SSMP,	2	0.951697
KDM1A	chr1	23405871	23405872	rs2072944	-	T	A/G	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TSC-CSHL,YUSUKE,	2	0.675697
KDM1A	chr1	23406245	23406246	rs567151	+	C	C/G	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,HGSV,SC_JCM,TISHKOFF,	2	0.984890
KDM1A	chr1	23406414	23406415	rs12088067	+	T	A/T	single	intron	4	1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF,	2	0.044475
KDM1A	chr1	23406484	23406485	rs2235547	-	C	C/G	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.451521
KDM1A	chr1	23406615	23406616	rs12061192	+	C	C/T	single	intron	3	1000GENOMES,SC_SNP,TISHKOFF,	2	0.962544
KDM1A	chr1	23406686	23406687	rs671419	-	C	A/G	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,HGSV,SC_JCM,TISHKOFF,	2	0.015568
KDM1A	chr1	23406722	23406723	rs12061244	+	C	C/T	single	intron	4	1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF,	2	0.965138
KDM1A	chr1	23407080	23407081	rs12751560	+	C	A/C	single	intron	14	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,	2	0.380365
KDM1A	chr1	23407096	23407097	rs579098	-	A	C/T	single	intron	17	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.826047
KDM1A	chr1	23407217	23407218	rs487001	+	C	A/C	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SC_JCM,TISHKOFF,	2	0.023394
KDM1A	chr1	23407283	23407284	rs487821	+	C	C/T	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,SC_JCM,TISHKOFF,	2	0.982569
KDM1A	chr1	23407711	23407712	rs2072943	-	G	C/G	single	intron	21	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.272603
KDM1A	chr1	23408243	23408244	rs12086789	+	G	A/G	single	intron	4	1000GENOMES,BUSHMAN,SC_SNP,TISHKOFF,	2	0.039658
KDM1A	chr1	23409537	23409538	rs2235546	-	G	C/T	single	intron	21	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SI_EXO,SSAHASNP,SSMP,YUSUKE,	2	0.646264
MTHFR	chr1	11845945	11845946	rs12023469	+	C	C/T	single	intron,untranslated-3	6	1000GENOMES,GMI,HGSV,PJP,SC_SNP,SSMP,	2	0.935839
MTHFR	chr1	11846251	11846252	rs4846048	+	G	A/G	single	intron,untranslated-3	18	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.739574
MTHFR	chr1	11846269	11846270	rs1057624	-	T	A/G	single	intron,untranslated-3	4	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,LEE,	2	0.989908
MTHFR	chr1	11846446	11846447	rs4845884	+	G	A/G	single	intron,untranslated-3	22	1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.923480
MTHFR	chr1	11846741	11846742	rs2184227	-	C	A/G	single	intron,untranslated-3	9	1000GENOMES,ABI,CGAP-GAI,CSHL-HAPMAP,GMI,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,	2	0.090367
MTHFR	chr1	11847435	11847436	rs2184226	-	T	A/G	single	intron,untranslated-3	11	1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,CLINSEQ_SNP,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL,	2	0.940602
MTHFR	chr1	11847740	11847742	rs35562212	-	CT	-/AG	deletion	intron,untranslated-3	2	1000GENOMES,SNP500CANCER,	3	0.004643
MTHFR	chr1	11847758	11847759	rs3737966	-	C	A/G	single	intron,untranslated-3	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,YUSUKE,	2	0.639547
MTHFR	chr1	11847771	11847772	rs3820192	-	G	A/C	single	intron,untranslated-3	7	1000GENOMES,BCM_SSAHASNP,ILLUMINA,SNP500CANCER,SSMP,TISHKOFF,YUSUKE,	2	0.093000
MTHFR	chr1	11847860	11847861	rs1537516	-	G	C/T	single	intron,untranslated-3	11	1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,GMI,ILLUMINA,KRIBB_YJKIM,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,	2	0.901821
MTHFR	chr1	11847901	11847902	rs1537515	-	C	G/T	single	intron,untranslated-3	9	1000GENOMES,ABI,CLINSEQ_SNP,GMI,ILLUMINA,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,	2	0.912761
MTHFR	chr1	11848138	11848139	rs11559040	-	G	C/T	single	intron,untranslated-3	11	1000GENOMES,BCMHGSC_JDW,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,SI_EXO,SSMP,TISHKOFF,	2	0.881116
MTHFR	chr1	11848878	11848879	rs2077360	+	A	A/G	single	intron,untranslated-3	19	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.055201
MTHFR	chr1	11848922	11848923	rs114646114	+	C	C/T	single	intron,untranslated-3	3	1000GENOMES,ILLUMINA,TISHKOFF,	2	0.986498
MTHFR	chr1	11848971	11848972	rs72640221	+	G	A/G	single	intron,untranslated-3	5	1000GENOMES,BUSHMAN,ILLUMINA,SSMP,TISHKOFF,	2	0.094867
MTHFR	chr1	11850990	11850990	rs200608598	+	-	-/CA	insertion	intron	1	1000GENOMES,	2	0.973370
MTHFR	chr1	11851002	11851003	rs3818762	-	G	C/G	single	intron	21	1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,NHLBI-ESP,PHARMGKB_PPII,PJP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.744971
MTHFR	chr1	11851117	11851118	rs7518348	+	A	A/G	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.117108
MTHFR	chr1	11851184	11851185	rs55686944	+	C	C/T	single	intron	6	1000GENOMES,BCM-HGSC-SUB,BL,CGM_KYOTO,IGVC,ILLUMINA,	2	0.975625
MTHFR	chr1	11851189	11851190	rs182261953	+	G	A/G	single	intron	1	1000GENOMES,	2	0.011938
MTHFR	chr1	11851218	11851219	rs45529133	-	C	A/G	single	intron	7	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,NHLBI-ESP,PHARMGKB_PPII,TISHKOFF,	2	0.031193
MTHFR	chr1	11851234	11851235	rs45483798	-	C	A/G	single	intron	4	1000GENOMES,CLINSEQ_SNP,NHLBI-ESP,PHARMGKB_PPII,	2	0.016654
MTHFR	chr1	11851790	11851791	rs116951275	+	A	A/G	single	intron	2	1000GENOMES,SSMP,	2	0.989991
MTHFR	chr1	11851926	11851927	rs41394446	-	C	A/G	single	intron	4	1000GENOMES,EGP_SNPS,ILLUMINA,SSMP,	2	0.018297
MTHFR	chr1	11851949	11851950	rs6700268	+	C	C/G	single	intron	19	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.030331
MTHFR	chr1	11852109	11852110	rs13306556	-	C	A/G	single	intron	11	1000GENOMES,BUSHMAN,CGM_KYOTO,EGP_SNPS,GMI,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,SNP500CANCER,SSMP,TISHKOFF,	2	0.101653
MTHFR	chr1	11852240	11852241	rs45578836	-	C	C/G	single	intron	7	1000GENOMES,EGP_SNPS,ILLUMINA,ILLUMINA-UK,SNP500CANCER,SSMP,TISHKOFF,	2	0.020093
MTHFR	chr1	11852299	11852300	rs1476413	-	C	A/G	single	intron	22	1000GENOMES,BCMHGSC_JDW,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SNP500CANCER,SSMP,TISHKOFF,TSC-CSHL,UWGC,	2	0.225798
MTHFR	chr1	11852515	11852516	rs17375901	+	C	C/T	single	intron	10	1000GENOMES,CGM_KYOTO,EGP_SNPS,EXOME_CHIP,ILLUMINA,PAGE_STUDY,PERLEGEN,PHARMGKB_PPII,SSMP,TISHKOFF,	2	0.971147
MTHFR	chr1	11852897	11852898	rs45525835	-	G	C/G	single	intron	4	1000GENOMES,EGP_SNPS,ILLUMINA,SSMP,	2	0.989508
MTHFR	chr1	11852968	11852969	rs4846050	+	T	C/T	single	intron	19	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.967683
MTHFR	chr1	11853598	11853599	rs7535669	+	G	C/G	single	intron	19	1000GENOMES,AFFY,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.948698
MTHFR	chr1	11853679	11853680	rs45444794	-	G	C/T	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.988288
MTHFR	chr1	11854670	11854671	rs12121543	+	C	A/C	single	intron	16	1000GENOMES,AFFY,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PHARMGKB_PPII,SC_SNP,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,	2	0.197415
MTHFR	chr1	11854754	11854755	rs1994798	-	G	C/T	single	intron	30	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGBASE,HGSV,HUMANGENOME_JCVI,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_PPII,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,UWGC,WI_SSAHASNP,	2	0.389116
MTHFR	chr1	11855037	11855038	rs2066465	-	C	A/G	single	intron	10	1000GENOMES,BUSHMAN,EGP_SNPS,HGBASE,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,UWGC,	2	0.022183
MTHFR	chr1	11855866	11855867	rs6541003	+	G	A/G	single	intron	20	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.621146
MTHFR	chr1	11855896	11855897	rs45495691	-	A	G/T	single	intron	6	1000GENOMES,BCM-HGSC-SUB,BL,EGP_SNPS,ILLUMINA,SSMP,	2	0.042890
MTHFR	chr1	11856083	11856084	rs45439601	-	G	C/T	single	intron	6	1000GENOMES,CGM_KYOTO,EGP_SNPS,HGSV,ILLUMINA,TISHKOFF,	2	0.969088
MTHFR	chr1	11856820	11856821	rs7545331	+	G	C/G	single	intron	16	1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.923105
MTHFR	chr1	11856846	11856847	rs17421462	+	G	A/G	single	intron	8	1000GENOMES,BCM-HGSC-SUB,BUSHMAN,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,	2	0.050882
MTHFR	chr1	11857206	11857207	rs45475403	-	C	A/G	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,	2	0.018349
MTHFR	chr1	11857239	11857240	rs7526128	+	C	C/T	single	intron	15	1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.354338
MTHFR	chr1	11857380	11857381	rs6541004	+	T	C/T	single	intron	17	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.848927
MTHFR	chr1	11857409	11857410	rs7537955	+	A	A/G	single	intron	15	1000GENOMES,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.256164
MTHFR	chr1	11857524	11857525	rs6541005	+	A	A/T	single	intron	10	1000GENOMES,ABI,BCM_SSAHASNP,BL,EGP_SNPS,ENSEMBL,GMI,PJP,SSAHASNP,WI_SSAHASNP,	2	0.412844
MTHFR	chr1	11857525	11857526	rs6541006	+	A	A/T	single	intron	13	1000GENOMES,BCM_SSAHASNP,BL,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SSAHASNP,SSMP,WI_SSAHASNP,	2	0.117216
MTHFR	chr1	11857525	11857525	rs201825647	+	-	-/T	insertion	intron	1	1000GENOMES,	2	0.645546
MTHFR	chr1	11857575	11857576	rs45577533	-	T	A/G	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,SSMP,TISHKOFF,	2	0.970183
MTHFR	chr1	11857710	11857711	rs1572151	-	T	A/G	single	intron	10	1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,EGP_SNPS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TSC-CSHL,	2	0.948652
MTHFR	chr1	11857787	11857788	rs17421511	+	G	A/G	single	intron	12	1000GENOMES,AFFY,BCMHGSC_JDW,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.112166
MTHFR	chr1	11857924	11857925	rs45449597	-	C	G/T	single	intron	8	1000GENOMES,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLUMINA,PJP,SSMP,	2	0.890826
MTHFR	chr1	11857925	11857926	rs45608437	-	G	C/T	single	intron	7	1000GENOMES,EGP_SNPS,ENSEMBL,GMI,HGSV,PJP,SSMP,	2	0.890367
MTHFR	chr1	11857950	11857951	rs4846052	+	T	C/T	single	intron	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.543057
MTHFR	chr1	11858035	11858036	rs17037388	+	A	A/G	single	intron	12	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SSMP,TISHKOFF,	3	0.862720
MTHFR	chr1	11858323	11858324	rs17421560	+	G	A/G	single	intron	8	1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.089535
MTHFR	chr1	11858362	11858363	rs72640233	+	C	C/T	single	intron	1	1000GENOMES,	2	0.982553
MTHFR	chr1	11858402	11858403	rs45533333	-	C	A/G	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,SSMP,	2	0.018349
MTHFR	chr1	11858549	11858550	rs45504202	-	C	A/G	single	intron	9	1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.111824
MTHFR	chr1	11858583	11858584	rs41452445	-	T	A/G	single	intron	5	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,SSMP,	2	0.985388
MTHFR	chr1	11858671	11858672	rs4845885	+	T	C/T	single	intron	21	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	1.000000
MTHFR	chr1	11858956	11858957	rs45553335	-	T	A/G	single	intron	6	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,HGSV,SSMP,TISHKOFF,	2	0.887156
MTHFR	chr1	11859041	11859042	rs45468191	-	A	C/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,EGP_SNPS,	2	0.017890
MTHFR	chr1	11859080	11859081	rs45530331	-	C	A/G	single	intron	3	1000GENOMES,EGP_SNPS,TISHKOFF,	2	0.014680
MTHFR	chr1	11859131	11859132	rs80307360	+	C	C/T	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,SSMP,	2	0.981651
MTHFR	chr1	11859389	11859390	rs77078602	+	T	C/T	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSMP,	2	0.017890
MTHFR	chr1	11859605	11859606	rs80038130	+	T	G/T	single	intron	4	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,SSMP,	2	0.017890
MTHFR	chr1	11859635	11859636	rs74683406	+	G	A/G	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,	2	0.017890
MTHFR	chr1	11859692	11859692	rs199894986	+	-	-/G	insertion	intron	1	1000GENOMES,	2	0.986226
MTHFR	chr1	11859700	11859701	rs3766747	-	T	A/C	single	intron	6	1000GENOMES,GMI,HGSV,PJP,WI_SSAHASNP,YUSUKE,	2	0.906948
MTHFR	chr1	11859746	11859747	rs111847924	+	G	A/G	single	intron	3	1000GENOMES,COMPLETE_GENOMICS,SSMP,	2	0.018349
MTHFR	chr1	11859876	11859877	rs45518732	-	C	A/G	single	intron	3	1000GENOMES,EGP_SNPS,GMI,	2	0.014055
MTHFR	chr1	11859907	11859908	rs45532338	-	C	A/G	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.020460
MTHFR	chr1	11859908	11859909	rs7527897	+	A	A/G	single	intron	16	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.051048
MTHFR	chr1	11860116	11860117	rs13306553	-	A	C/T	single	intron	9	1000GENOMES,EGP_SNPS,GMI,HGSV,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,SSMP,TISHKOFF,	2	0.094567
MTHFR	chr1	11860119	11860120	rs11121832	+	T	C/T	single	intron	22	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.776261
MTHFR	chr1	11860454	11860455	rs2066469	-	C	A/G	single	intron	7	1000GENOMES,EGP_SNPS,HGBASE,ILLUMINA,PHARMGKB_PPII,SNP500CANCER,UWGC,	2	0.019910
MTHFR	chr1	11860457	11860458	rs2066471	-	C	A/G	single	intron	17	1000GENOMES,BCMHGSC_JDW,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGBASE,ILLUMINA,IMCJ-GDT,PHARMGKB_PPII,SEQUENOM,SI_EXO,SNP500CANCER,SSMP,TISHKOFF,UWGC,	2	0.105245
MTHFR	chr1	11860464	11860465	rs13306567	-	C	C/G	single	intron	11	1000GENOMES,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,ILLUMINA,IMCJ-GDT,PERLEGEN,PHARMGKB_PPII,SI_EXO,SNP500CANCER,SSMP,	2	0.020140
MTHFR	chr1	11860682	11860683	rs7533315	+	T	C/T	single	intron	21	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SNP500CANCER,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.799821
MTHFR	chr1	11860683	11860684	rs35593468	-	G	C/T	single	intron	3	1000GENOMES,EGP_SNPS,SNP500CANCER,	2	0.987230
MTHFR	chr1	11860806	11860807	rs35464336	-	C	A/G	single	intron	6	1000GENOMES,EGP_SNPS,GMI,SNP500CANCER,SSMP,TISHKOFF,	2	0.095680
MTHFR	chr1	11860842	11860843	rs17037390	+	G	A/G	single	intron	13	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,SSMP,TISHKOFF,	2	0.148453
MTHFR	chr1	11860990	11860991	rs45602238	-	C	A/G	single	intron	1	EGP_SNPS,	2	0.020270
MTHFR	chr1	11861663	11861664	rs45577937	-	G	C/T	single	intron	2	1000GENOMES,EGP_SNPS,	2	0.989474
MTHFR	chr1	11861854	11861855	rs45603435	-	A	C/T	single	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,SSMP,TISHKOFF,	2	0.112282
MTHFR	chr1	11861952	11861952	rs201401275	+	-	-/CCTGGGC	insertion	intron	1	1000GENOMES,	2	0.982553
MTHFR	chr1	11862046	11862047	rs17037396	+	C	C/T	single	intron	8	1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.901163
MTHFR	chr1	11862060	11862065	rs71568355	+	ACAGA	-/ACAGA	deletion	intron	4	1000GENOMES,BL,HUMANGENOME_JCVI,LUNTER,	2	0.025688
MTHFR	chr1	11862162	11862163	rs17037397	+	C	A/C	single	intron	8	1000GENOMES,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.054881
MTHFR	chr1	11862213	11862214	rs9651118	+	T	C/T	single	intron	16	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,	2	0.214056
MTHFR	chr1	11862330	11862331	rs7547068	+	G	A/G	single	intron	6	1000GENOMES,EGP_SNPS,HGSV,ILLUMINA-UK,SSMP,WI_SSAHASNP,	2	0.017399
MTHFR	chr1	11862331	11862332	rs7525338	+	C	C/T	single	intron	7	1000GENOMES,EGP_SNPS,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,WI_SSAHASNP,	2	0.986948
MTHFR	chr1	11862337	11862338	rs111541538	+	C	C/G	single	intron	3	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,	2	0.987168
MTHFR	chr1	11862518	11862520	rs45449894	-	AA	-/TT	deletion	intron	4	1000GENOMES,EGP_SNPS,LUNTER,TISHKOFF,	2	0.011364
MTHFR	chr1	11862533	11862534	rs45589544	-	A	-/T	deletion	intron	6	1000GENOMES,CGM_KYOTO,EGP_SNPS,GMI,LUNTER,SSMP,	2	0.104651
MTHFR	chr1	11862764	11862764	rs55645287	+	-	-/T	insertion	intron	6	1000GENOMES,CGM_KYOTO,GMI,LUNTER,SSMP,TISHKOFF,	2	0.912764
MTHFR	chr1	11862777	11862778	rs17367504	+	A	A/G	single	intron	13	1000GENOMES,AFFY,BUSHMAN,CGM_KYOTO,COMPLETE_GENOMICS,EGP_SNPS,EXOME_CHIP,GMI,ILLUMINA,KRIBB_YJKIM,PAGE_STUDY,PERLEGEN,TISHKOFF,	2	0.888629
MTHFR	chr1	11863276	11863277	rs17037404	+	G	A/G	single	intron	7	1000GENOMES,EGP_SNPS,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.027505
MTHFR	chr1	11863903	11863904	rs3753588	-	C	A/G	single	intron	11	1000GENOMES,EGP_SNPS,GMI,IMCJ-GDT,KYUGEN,PERLEGEN,PHARMGKB_PPII,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.092083
MTHFR	chr1	11864148	11864149	rs7553194	+	G	A/G	single	intron	9	1000GENOMES,GMI,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,PHARMGKB_PPII,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.096052
MTHFR	chr1	11864167	11864168	rs3753587	-	T	A/T	single	intron,near-gene-5	15	1000GENOMES,ABI,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,IMCJ-GDT,PHARMGKB_PPII,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE,	2	0.885636
MTHFR	chr1	11864261	11864262	rs3753586	-	T	A/G	single	intron,near-gene-5	9	1000GENOMES,EGP_SNPS,GMI,IMCJ-GDT,PHARMGKB_PPII,PJP,SSMP,WI_SSAHASNP,YUSUKE,	2	0.948165
MTHFR	chr1	11864377	11864378	rs3753585	-	G	C/T	single	intron,near-gene-5	8	1000GENOMES,EGP_SNPS,GMI,IMCJ-GDT,PHARMGKB_PPII,SSMP,TISHKOFF,YUSUKE,	2	0.947248
MTHFR	chr1	11864585	11864586	rs3753584	-	T	A/G	single	intron,near-gene-5	12	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PHARMGKB_PPII,SSMP,TISHKOFF,YUSUKE,	2	0.880864
MTHFR	chr1	11865063	11865067	rs3834045	-	TTGC	-/GCAA	deletion	intron,near-gene-5	6	1000GENOMES,ABI,GMI,LUNTER,SSMP,YUSUKE,	2	0.090909
MTHFR	chr1	11865068	11865069	rs45513994	-	T	-/AGCA	in-del	intron,near-gene-5	1	PHARMGKB_PPII,	2	0.070833
MTHFR	chr1	11865235	11865236	rs17367629	+	C	C/T	single	intron,near-gene-5	8	1000GENOMES,GMI,HGSV,ILLUMINA,PERLEGEN,PHARMGKB_PPII,SSMP,TISHKOFF,	2	0.907328
MTHFR	chr1	11865249	11865250	rs3753583	-	G	C/T	single	intron,near-gene-5	7	1000GENOMES,GMI,ILLUMINA,KRIBB_YJKIM,PHARMGKB_PPII,SSMP,YUSUKE,	2	0.986339
MTHFR	chr1	11865284	11865284	rs3834044	-	-	-/G	insertion	intron,near-gene-5	7	1000GENOMES,HGSV,LUNTER,PHARMGKB_PPII,SSMP,TISHKOFF,YUSUKE,	2	0.880361
MTHFR	chr1	11865340	11865341	rs45504095	-	C	A/G	single	intron,near-gene-5	7	1000GENOMES,BUSHMAN,HGSV,ILLUMINA,ILLUMINA-UK,PHARMGKB_PPII,TISHKOFF,	2	0.018315
MTHFR	chr1	11865541	11865542	rs3753582	-	A	G/T	single	intron,near-gene-5	8	1000GENOMES,HGSV,ILLUMINA,PERLEGEN,PHARMGKB_PPII,SSMP,TISHKOFF,YUSUKE,	2	0.092450
MTHFR	chr1	11865663	11865664	rs45440899	-	T	A/G	single	intron,near-gene-5	4	1000GENOMES,HGSV,PHARMGKB_PPII,TISHKOFF,	2	0.982110
MTHFR	chr1	11865803	11865804	rs13306561	-	A	C/T	single	intron,near-gene-5	11	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,ILLUMINA-UK,IMCJ-GDT,KRIBB_YJKIM,PHARMGKB_PPII,SSMP,TISHKOFF,	2	0.149580
MTHFR	chr1	11865816	11865817	rs45594036	-	C	G/T	single	intron,near-gene-5	3	1000GENOMES,COMPLETE_GENOMICS,PHARMGKB_PPII,	2	0.981651
MTHFR	chr1	11865816	11865816	rs3834043	-	-	-/G	insertion	intron,near-gene-5	3	1000GENOMES,LUNTER,YUSUKE,	2	0.902663
MTHFR	chr1	11865824	11865824	rs45518935	-	-	-/G	insertion	intron,near-gene-5	2	HGSV,PHARMGKB_PPII,	2	0.914583
MTHFR	chr1	11866441	11866442	rs111334345	+	G	A/G	single	intron,near-gene-5	3	1000GENOMES,COMPLETE_GENOMICS,NHLBI-ESP,	2	0.010550
MTHFR	chr1	11866450	11866451	rs3737965	-	G	C/T	single	intron,near-gene-5	6	1000GENOMES,ILLUMINA,NHLBI-ESP,PHARMGKB_PPII,SSMP,YUSUKE,	2	0.944958
MTHFR	chr1	11866594	11866595	rs45498791	-	C	G/T	single	intron,near-gene-5	3	1000GENOMES,ILLUMINA,PHARMGKB_PPII,	2	0.976585
PPOX	chr1	161136842	161136843	rs2301287	+	C	C/G	single	intron	22	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PJP,SC_JCM,SC_SNP,SI_EXO,SSMP,TISHKOFF,YUSUKE,	2	0.625801
PPOX	chr1	161137457	161137458	rs7544090	+	G	A/G	single	intron	6	1000GENOMES,BL,GMI,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.075298
PPOX	chr1	161138134	161138135	rs2301288	+	C	C/T	single	intron	6	1000GENOMES,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SSMP,YUSUKE,	2	0.986012
PPOX	chr1	161139950	161139951	rs12741203	+	C	C/T	single	intron	10	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,	2	0.698079
PPOX	chr1	161142298	161142299	rs117585611	+	T	G/T	single	intron	2	1000GENOMES,SSMP,	2	0.015666
PPOX	chr1	161142473	161142473	rs5778197	+	-	-/TTAG	insertion	intron	10	1000GENOMES,ABI,BILGI_BIOE,BL,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,TISHKOFF,	2	0.627523
PPOX	chr1	161143311	161143312	rs11579514	+	T	C/T	single	intron	21	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.286567
PPOX	chr1	161143918	161143919	rs112810680	+	C	C/T	single	intron	3	1000GENOMES,BCM-HGSC-SUB,ILLUMINA,	2	0.946475
PPOX	chr1	161143932	161143933	rs147487659	+	T	C/T	single	intron	1	1000GENOMES,	2	0.013774
PPOX	chr1	161143968	161143969	rs11265561	+	A	A/G	single	intron	15	1000GENOMES,ABI,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.622323
PPOX	chr1	161145124	161145125	rs3813621	+	G	A/G	single	intron	7	1000GENOMES,BUSHMAN,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,YUSUKE,	2	0.015254
ACP2	chr11	47262505	47262506	rs74961003	+	A	A/T	single	intron	2	1000GENOMES,ILLUMINA,	2	0.989556
ACP2	chr11	47262591	47262592	rs11039143	+	T	G/T	single	intron	7	1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF,	2	0.033846
ACP2	chr11	47262647	47262648	rs7933246	+	G	C/G	single	intron	13	1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PJP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.357437
ACP2	chr11	47262839	47262840	rs2167080	-	G	C/T	single	intron	12	1000GENOMES,ABI,BCMHGSC_JDW,CSHL-HAPMAP,ENSEMBL,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,TSC-CSHL,	2	0.804945
ACP2	chr11	47262992	47262993	rs185717458	+	G	A/G	single	intron	1	1000GENOMES,	2	0.014692
ACP2	chr11	47263059	47263060	rs4752972	+	C	C/T	single	intron	12	1000GENOMES,BCM-HGSC-SUB,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.643936
ACP2	chr11	47264043	47264044	rs11039144	+	G	A/G	single	intron	14	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,ILLUMINA-UK,SC_SNP,SSMP,TISHKOFF,	2	0.349453
ACP2	chr11	47264528	47264529	rs11039145	+	C	C/T	single	intron	7	1000GENOMES,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SC_SNP,SSMP,TISHKOFF,	2	0.966514
ACP2	chr11	47264535	47264536	rs113080778	+	C	C/T	single	intron	5	1000GENOMES,BUSHMAN,ILLUMINA,NHLBI-ESP,TISHKOFF,	2	0.988073
ACP2	chr11	47265193	47265194	rs7120158	+	G	C/G	single	intron	14	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,PERLEGEN,SC_SNP,SSMP,TISHKOFF,	2	0.377112

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