Cobalamin SNPs Near Gene 5' Data

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Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
MMAB	chr12	110011228	110011229	rs10774774	+	G	G/T	coding-synon,near-gene-5,ncRNA	14	1000GENOMES,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KYUGEN,NHLBI-ESP,PJP,RSG_JCVI,SC_SNP,SEATTLESEQ,SSMP,	2	0.692394
MMAB	chr12	110011229	110011230	rs10774775	+	C	C/T	near-gene-5,ncRNA,missense	15	1000GENOMES,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,KYUGEN,NHLBI-ESP,PJP,RSG_JCVI,SC_SNP,SEATTLESEQ,SSMP,	2	0.692981
FUT2	chr19	49198871	49198872	rs113074356	+	G	A/G	near-gene-5	3	1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,	2	0.028899
MTR	chr1	236957765	236957766	rs116239811	+	T	C/T	near-gene-5	2	1000GENOMES,ILLUMINA,	2	0.012185
MMAA	chr4	146540156	146540157	rs117832435	+	G	A/G	near-gene-5	2	1000GENOMES,SSMP,	2	0.014795
MMACHC	chr1	45966297	45966298	rs12042903	+	A	A/G	intron,near-gene-5	10	1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.752059
MMAB	chr12	110010865	110010866	rs12314392	+	A	A/G	intron,near-gene-5	17	1000GENOMES,AFFY,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,RSG_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.559424
MMAB	chr12	110009755	110009756	rs12322541	+	A	A/G	intron,near-gene-5	13	1000GENOMES,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,PJP,RSG_JCVI,SC_SNP,SSMP,TISHKOFF,	2	0.704026
MMACHC	chr1	45965306	45965307	rs12568144	+	G	A/G	near-gene-5,ncRNA	17	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,CORNELL,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,NHLBI-ESP,PJP,SI_EXO,SSAHASNP,SSMP,TISHKOFF,	2	0.487077
MMACHC	chr1	45965319	45965320	rs12568145	+	G	A/G	near-gene-5,ncRNA	5	1000GENOMES,ABI,CSHL-HAPMAP,NHLBI-ESP,SSMP,	2	0.030461
MTRR	chr5	7870094	7870095	rs12653464	+	G	A/G	intron,near-gene-5	11	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,KYUGEN,PHARMGKB_PPII,SSMP,TISHKOFF,	2	0.247938
MTRR	chr5	7869590	7869591	rs138374466	+	C	C/T	intron,near-gene-5	1	1000GENOMES,	2	0.988981
MMAB	chr12	110009552	110009552	rs140204601	+	-	-/A	intron,near-gene-5	4	1000GENOMES,LUNTER,SSMP,WARNICH_LAB,	2	0.989899
FUT2	chr19	49198768	49198769	rs140324874	+	A	A/G	near-gene-5	1	1000GENOMES,	2	0.987603
MTRR	chr5	7869385	7869388	rs141755990	+	CC	-/CCT	intron,near-gene-5	2	PHARMGKB_PPII,TISHKOFF,	2	0.038328
MMAB	chr12	110010048	110010048	rs145037438	+	-	-/T	intron,near-gene-5	3	1000GENOMES,LUNTER,SSMP,	2	0.961433
MMAA	chr4	146539629	146539630	rs1497125	-	C	A/G	near-gene-5	18	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TSC-CSHL,	2	0.470024
MTRR	chr5	7869383	7869386	rs150132234	+	CT	-/CTC	intron,near-gene-5	3	1000GENOMES,LUNTER,WARNICH_LAB,	2	0.035813
FUT2	chr19	49198344	49198345	rs150156163	+	G	A/G	near-gene-5	2	1000GENOMES,TISHKOFF,	2	0.011938
MTRR	chr5	7870972	7870973	rs1801394	+	A	A/G	near-gene-5,missense	29	1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGBASE,HUMANGENOME_JCVI,ILLUMINA,KYUGEN,NHLBI-ESP,OMICIA,OMIM-CURATED-RECOR	2	0.572342
MMAA	chr4	146539824	146539825	rs185301031	+	C	C/T	near-gene-5	1	1000GENOMES,	2	0.971534
MMAB	chr12	110010150	110010151	rs2111216	-	A	C/T	intron,near-gene-5	17	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,RSG_JCVI,SC_JCM,SSAHASNP,SSMP,TSC-CSHL,	2	0.608755
FUT2	chr19	49198335	49198336	rs2548457	+	T	C/T	near-gene-5	11	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.178539
FUT2	chr19	49198675	49198676	rs28362828	+	C	C/T	near-gene-5	4	1000GENOMES,ILLUMINA,PGA-UW-FHCRC,TISHKOFF,	2	0.97659
FUT2	chr19	49198963	49198964	rs28362829	+	C	C/T	near-gene-5	4	1000GENOMES,ILLUMINA,PGA-UW-FHCRC,TISHKOFF,	2	0.984155
MTR	chr1	236958159	236958160	rs28372867	+	G	C/G	near-gene-5	5	1000GENOMES,COMPLETE_GENOMICS,KYUGEN,SSMP,TISHKOFF,	2	0.069266
MTR	chr1	236958382	236958383	rs28372868	+	A	A/C	near-gene-5	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,KYUGEN,SSMP,TISHKOFF,	2	0.9172
MTR	chr1	236958477	236958478	rs28372869	+	T	A/T	near-gene-5	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,KYUGEN,SSMP,TISHKOFF,	2	0.073327
MTR	chr1	236958514	236958515	rs28372870	+	C	C/T	near-gene-5	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,KYUGEN,SSMP,TISHKOFF,	2	0.926316
MTR	chr1	236958531	236958532	rs28372871	+	G	G/T	near-gene-5	13	1000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KYUGEN,PJP,SI_EXO,SSMP,	2	0.530137
MMAA	chr4	146539912	146539913	rs28663469	+	G	A/G	near-gene-5	14	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.329986
MTRR	chr5	7868542	7868543	rs326118	+	T	G/T	intron,near-gene-5	18	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KWOK,PHARMGKB_PPII,PJP,SC_JCM,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.232664
MTRR	chr5	7870082	7870083	rs326119	+	C	A/C	intron,near-gene-5	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KWOK,KYUGEN,PHARMGKB_PPII,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.60128
MUT	chr6	49429306	49429307	rs34272273	+	C	C/T	intron,near-gene-5	3	1000GENOMES,ABI,HUMANGENOME_JCVI,	2	0.975229
MTRR	chr5	7869455	7869456	rs34828626	+	C	-/C	intron,near-gene-5	7	1000GENOMES,ABI,HUMANGENOME_JCVI,LUNTER,PHARMGKB_PPII,PJP,SSMP,	2	0.214482
MUT	chr6	49430973	49430974	rs3729619	-	T	A/T	near-gene-5,untranslated-5	14	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,KYUGEN,PERLEGEN,SC_SNP,SSMP,TISHKOFF,YUSUKE,	2	0.669274
MTRR	chr5	7868268	7868269	rs3733781	-	A	C/T	intron,near-gene-5,untranslated-5	8	1000GENOMES,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,YUSUKE,	2	0.123683
MMACHC	chr1	45965702	45965703	rs3748643	+	G	G/T	near-gene-5,ncRNA	21	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CORNELL,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.180597
MMACHC	chr1	45965770	45965771	rs3748644	+	A	A/G	near-gene-5	4	1000GENOMES,GMI,SSMP,YUSUKE,	2	0.988691
MTRR	chr5	7868865	7868866	rs3822445	-	G	C/G	intron,near-gene-5	9	1000GENOMES,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA-UK,PHARMGKB_PPII,SSMP,TISHKOFF,YUSUKE,	2	0.859432
MMACHC	chr1	45966581	45966582	rs4660864	+	G	A/G	intron,near-gene-5	23	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SSAHASNP,SSMP,TISHKOFF,WI	2	0.827784
MUT	chr6	49429263	49429264	rs4715131	+	C	C/T	intron,near-gene-5	11	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.678571
FUT2	chr19	49199006	49199007	rs480133	+	T	C/T	near-gene-5	9	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PGA-UW-FHCRC,SC_JCM,SSMP,TISHKOFF,	2	0.156923
FUT2	chr19	49199121	49199122	rs481104	+	T	G/T	near-gene-5	6	1000GENOMES,BUSHMAN,ILLUMINA,PGA-UW-FHCRC,SC_JCM,TISHKOFF,	2	0.102564
MUT	chr6	49429417	49429418	rs62411931	+	G	A/G	intron,near-gene-5	2	1000GENOMES,BCMHGSC_JDW,	2	0.016529
MMAB	chr12	110009537	110009538	rs66580225	+	A	A/G	intron,near-gene-5	8	1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,RSG_JCVI,SSMP,TISHKOFF,	2	0.951079
MMAB	chr12	110010050	110010050	rs72646978	+	-	-/T	intron,near-gene-5	1	RSG_JCVI,	2	0.953488
MMAB	chr12	110010702	110010703	rs72651710	+	T	C/T	intron,near-gene-5	1	RSG_JCVI,	2	0.02
MMAB	chr12	110010713	110010714	rs72651713	+	T	C/T	intron,near-gene-5	1	RSG_JCVI,	2	0.014286
MTRR	chr5	7869234	7869235	rs72716536	+	T	C/T	near-gene-5,untranslated-5	9	1000GENOMES,BL,CLINSEQ_SNP,COMPLETE_GENOMICS,ILLUMINA,NHLBI-ESP,PHARMGKB_PPII,SSMP,TISHKOFF,	2	0.170937

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