CmrC

  miRNA Cluster

miRNA Cluster : hsa-mir-1227/mir-6789

Chromosome : chr19

Genomic Location : 2234062-2235926

No. of Candidates : 2




Multiple TSS are identified for some miRNA clusters

TSS GRCh19 : 2236306

TSS GRCh38 : 2236307

  miRNA Cluster Candidates
miRNA miRBase ID Chromosome Start End Strand
hsa-mir-6789 MI0022634 Chr19 2235829 2235926 -
hsa-mir-1227 MI0006316 Chr19 2234062 2234149 -

  miRNA Cluster and CNV co-localization

Cancer Abberation Kind Chromosome CNV Start CNV End Size [bp] Overlap [bp]
BLCA Del chr19 284018 6882398 6598392 1864
BRCA Del chr19 284018 10005400 9832059 1864
CESC Del chr19 284018 10330727 10157386 1864
COAD Del chr19 284018 5149248 4865242 1864
COADREAD Del chr19 284018 6004094 5720088 1864
ESCA Del chr19 284018 7300044 7016038 1864
GBM Amp chr19 284018 3934980 3650961 1864
GBMLGG Amp chr19 284018 5757024 5473018 1864
HNSC Del chr19 284018 8118119 7898986 1864
KIPAN Del chr19 2021910 2241953 220044 1864
KIRC Del chr19 2021910 2241953 220044 1864
LGG Amp chr19 284018 2284285 2000267 1864
LIHC Del chr19 284018 13242908 13069705 1864
LUAD Del chr19 284018 16683279 16510073 1864
LUSC Del chr19 284018 4806497 4522492 1864
OV Del chr19 284018 8946265 8772924 1864
PAAD Del chr19 1731832 2912578 1180746 1864
PCPG Amp chr19 284018 10310570 10137229 1864
READ Del chr19 1100075 2268056 1167982 1864
SKCM Del chr19 2182903 2328434 145532 1864
STAD Del chr19 284018 10464035 10290694 1864
THCA Del chr19 1642508 4975553 3333058 1864
UCEC Del chr19 284018 9872134 9698793 1864
UCS Del chr19 284018 8954956 8781615 1864

  Genome Browser

  Chromosome Fragile site Association

     Fragile Site: FRA19B

     Location : chr19:1-20000000

     Length : 20000000 bp

     Frequency : Rare

     PMID : 3568428