CmrC

  miRNA Cluster

miRNA Cluster : hsa-mir-99b/mir-125a

Chromosome : chr19

Genomic Location : 51692612-51693339

No. of Candidates : 3




Multiple TSS are identified for some miRNA clusters

TSS GRCh19 : 52192634

TSS GRCh38 : 51689381

  miRNA Cluster Candidates
miRNA miRBase ID Chromosome Start End Strand
hsa-mir-99b MI0000746 Chr19 51692612 51692681 +
hsa-let-7e MI0000066 Chr19 51692786 51692864 +
hsa-mir-125a MI0000469 Chr19 51693254 51693339 +

  miRNA Cluster and CNV co-localization

Cancer Abberation Kind Chromosome CNV Start CNV End Size [bp] Overlap [bp]
BLCA Amp chr19 51476420 51754420 278000 727
BRCA Amp chr19 51692221 51716766 24546 727
CESC Amp chr19 51590035 52135658 545624 727
GBM Del chr19 44992009 58366859 13382960 727
GBMLGG Del chr19 31785013 58366859 26602308 727
LGG Del chr19 27749586 58366859 30637733 727
OV Del chr19 43754429 58366859 14619646 727
SARC Del chr19 50491167 54120554 3629511 727
TGCT Del chr19 51345715 56119948 4782349 727

  Genome Browser

  Chromosome Fragile site Association

     Fragile Site: FRA19A

     Location : chr19:32400001-59128983

     Length : 26728983 bp

     Frequency : Common

     PMID : 2579891