rC
miRNA Cluster Details
miRNA Cluster
miRNA Cluster : hsa-let-7a-2/mir-100
Chromosome : chr11
Genomic Location : 122146522-122152308
No. of Candidates : 3
TSS GRCh19 : 122051339
TSS GRCh38 : 122180631
miRNA Cluster Candidates
| miRNA | miRBase ID | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| hsa-mir-100 | MI0000102 | Chr11 | 122152229 | 122152308 | - |
| hsa-mir-10526 | MI0033673 | Chr11 | 122152103 | 122152156 | - |
| hsa-let-7a-2 | MI0000061 | Chr11 | 122146522 | 122146593 | - |
miRNA Cluster and CNV co-localization
| Cancer | Abberation Kind | Chromosome | CNV Start | CNV End | Size [bp] | Overlap [bp] |
|---|---|---|---|---|---|---|
| BRCA | Del | chr11 | 88392702 | 134272636 | 46016661 | 5786 |
| CESC | Del | chr11 | 103984005 | 134272636 | 30287798 | 5786 |
| COADREAD | Del | chr11 | 122098378 | 122251443 | 153066 | 5786 |
| DLBC | Amp | chr11 | 121751275 | 128333740 | 6581653 | 5786 |
| ESCA | Del | chr11 | 122142461 | 122405931 | 263471 | 5786 |
| GBMLGG | Amp | chr11 | 117467657 | 129767071 | 12298594 | 5786 |
| HNSC | Del | chr11 | 102588775 | 134272636 | 31683025 | 5786 |
| KIRP | Del | chr11 | 120535134 | 124032963 | 3497828 | 5786 |
| LGG | Amp | chr11 | 117434745 | 134272636 | 16837070 | 5786 |
| LIHC | Del | chr11 | 107309216 | 134270258 | 26960211 | 5786 |
| LUAD | Del | chr11 | 122099754 | 122242115 | 142362 | 5786 |
| PRAD | Del | chr11 | 121650828 | 122431801 | 780973 | 5786 |
| READ | Del | chr11 | 121333465 | 122251443 | 917978 | 5786 |
| SARC | Del | chr11 | 109506352 | 134270258 | 24763075 | 5786 |
| SKCM | Del | chr11 | 102588775 | 134272636 | 31683025 | 5786 |
| STAD | Del | chr11 | 122149091 | 123335885 | 1186795 | 3217 |
| TGCT | Del | chr11 | 117479621 | 134272636 | 16792195 | 5786 |
Genome Browser
Chromosome Fragile site Association