rC
miRNA Cluster Details
miRNA Cluster
miRNA Cluster : hsa-mir-214/mir-199a-2
Chromosome : chr1
Genomic Location : 172138798-172144644
No. of Candidates : 3
TSS GRCh19 : 172113933
TSS GRCh38 : 172144793
TSS GRCh19 : 171810637
TSS GRCh38 : 171841497
miRNA Cluster Candidates
| miRNA | miRBase ID | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| hsa-mir-199a-2 | MI0000281 | Chr1 | 172144535 | 172144644 | - |
| hsa-mir-3120 | MI0014136 | Chr1 | 172138808 | 172138888 | + |
| hsa-mir-214 | MI0000290 | Chr1 | 172138798 | 172138907 | - |
miRNA Cluster and CNV co-localization
| Cancer | Abberation Kind | Chromosome | CNV Start | CNV End | Size [bp] | Overlap [bp] |
|---|---|---|---|---|---|---|
| BLCA | Amp | chr1 | 149907993 | 189745259 | 39834845 | 5846 |
| BRCA | Amp | chr1 | 149907993 | 247650404 | 97934162 | 5846 |
| CESC | Amp | chr1 | 149909846 | 204211498 | 54299229 | 5846 |
| CHOL | Amp | chr1 | 171571055 | 178350665 | 6779607 | 5846 |
| COAD | Amp | chr1 | 149913375 | 221405132 | 71693548 | 5846 |
| COADREAD | Amp | chr1 | 149909846 | 247650404 | 97932309 | 5846 |
| DLBC | Amp | chr1 | 171233788 | 174160919 | 2927131 | 5846 |
| ESCA | Amp | chr1 | 172082792 | 172224163 | 141372 | 5846 |
| HNSC | Amp | chr1 | 171019357 | 172150830 | 1131473 | 5846 |
| KIPAN | Amp | chr1 | 149909846 | 205953579 | 56293284 | 5846 |
| KIRC | Amp | chr1 | 170159272 | 181408393 | 11249117 | 5846 |
| KIRP | Amp | chr1 | 171964376 | 179254616 | 7290236 | 5846 |
| LIHC | Amp | chr1 | 149907993 | 247650404 | 97934162 | 5846 |
| LUAD | Amp | chr1 | 149907993 | 247650404 | 97934162 | 5846 |
| LUSC | Amp | chr1 | 149907993 | 247650404 | 97934162 | 5846 |
| MESO | Amp | chr1 | 170159272 | 173780644 | 3621370 | 5846 |
| OV | Amp | chr1 | 149907993 | 205289314 | 55378898 | 5846 |
| PAAD | Amp | chr1 | 149909846 | 177538592 | 27626330 | 5846 |
| PCPG | Amp | chr1 | 159878046 | 172364108 | 12485413 | 5846 |
| READ | Amp | chr1 | 167864885 | 174529856 | 6664872 | 5846 |
| SARC | Amp | chr1 | 168847007 | 172830437 | 3983333 | 5846 |
| SKCM | Amp | chr1 | 149909846 | 247650404 | 97932309 | 5846 |
| STAD | Amp | chr1 | 149909846 | 184214005 | 34301742 | 5846 |
| TGCT | Amp | chr1 | 164823941 | 173667915 | 8843877 | 5846 |
| THCA | Amp | chr1 | 169986410 | 179779379 | 9792964 | 5846 |
| THYM | Amp | chr1 | 165424608 | 179108892 | 13684183 | 5846 |
| UCEC | Amp | chr1 | 149907993 | 247650404 | 97934162 | 5846 |
| UCS | Amp | chr1 | 171752924 | 172838114 | 1085191 | 5846 |
Genome Browser
Chromosome Fragile site Association