Gene Symbol | Chromosome | CpG Start | CpG End | Name | SNP Start | SNP End | rsID | Strand | ref NCBI | Observed | No of CpGs | CpG% | GC% | Observed/Expected Ratio | Function |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145577998 | 145577999 | rs2272664 | - | T | A/T | 96 | 18.4 | 68.4 | 0.79 | intron |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145581556 | 145581557 | rs2280840 | + | G | A/G | 96 | 18.4 | 68.4 | 0.79 | intron,near-gene-5 |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145581949 | 145581950 | rs200282665 | + | C | C/G | 96 | 18.4 | 68.4 | 0.79 | near-gene-5,missense |
SLC52A2 | chr8 | 145577098 | 145578142 | CpG: 96 | 145582121 | 145582122 | rs183286864 | + | C | C/T | 96 | 18.4 | 68.4 | 0.79 | near-gene-5,untranslated-5 |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79008643 | 79008644 | rs62567919 | + | G | G/T | 157 | 21.9 | 69.7 | 0.9 | intron |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79008673 | 79008674 | rs7045064 | + | T | C/T | 157 | 21.9 | 69.7 | 0.9 | intron |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79008946 | 79008947 | rs41288757 | + | C | C/T | 157 | 21.9 | 69.7 | 0.9 | intron |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79009138 | 79009139 | rs3739729 | + | A | A/G | 157 | 21.9 | 69.7 | 0.9 | untranslated-5 |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79009203 | 79009204 | rs11548954 | - | C | A/G | 157 | 21.9 | 69.7 | 0.9 | untranslated-5 |
RFK | chr9 | 145581331 | 145582765 | CpG: 157 | 79009235 | 79009236 | rs11548952 | - | G | C/T | 157 | 21.9 | 69.7 | 0.9 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009255 | 79009256 | rs7026641 | + | C | C/T | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009289 | 79009290 | rs142046364 | + | C | A/C | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009346 | 79009347 | rs3739730 | + | G | A/G | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009365 | 79009366 | rs11548955 | - | G | C/T | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |
RFK | chr9 | 79008637 | 79009762 | CpG: 106 | 79009421 | 79009422 | rs114707234 | + | C | C/T | 106 | 18.8 | 63.9 | 0.93 | untranslated-5 |