Riboflavin SNP Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Class	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ACAD9	chr3	128607293	128607294	rs114417154	+	C	C/T	single	intron	2	1000GENOMES,TISHKOFF,	2	0.979530
ACAD9	chr3	128607378	128607379	rs115046806	+	G	A/G	single	intron	1	1000GENOMES,	2	0.033072
ACAD9	chr3	128607383	128607384	rs62268187	+	T	G/T	single	intron	4	1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,	2	0.044495
ACAD9	chr3	128607467	128607468	rs73208002	+	C	A/C	single	intron	1	1000GENOMES,	2	0.032637
ACAD9	chr3	128607521	128607521	rs201108858	+	-	-/A	insertion	intron	3	1000GENOMES,LUNTER,SSMP,	2	0.961433
ACAD9	chr3	128607646	128607647	rs150895592	+	T	-/T	deletion	intron	2	1000GENOMES,LUNTER,	2	0.012397
ACAD9	chr3	128608195	128608196	rs6786847	+	C	C/T	single	intron	5	1000GENOMES,BCM_SSAHASNP,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF,	2	0.934005
ACAD9	chr3	128608299	128608300	rs62268188	+	G	A/G	single	intron	5	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,TISHKOFF,	2	0.054587
ACAD9	chr3	128608340	128608341	rs2929859	+	T	G/T	single	intron	15	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.341241
ACAD9	chr3	128608578	128608579	rs13073796	+	T	G/T	single	intron	11	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.108424
ACAD9	chr3	128608750	128608751	rs6790091	+	G	C/G	single	intron	15	1000GENOMES,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP,	2	0.456700
ACAD9	chr3	128608977	128608977	rs199961338	+	-	-/T	insertion	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.983471
ACAD9	chr3	128609025	128609026	rs150454584	+	G	A/G	single	intron	1	1000GENOMES,	2	0.031221
ACAD9	chr3	128609197	128609198	rs13434000	+	G	A/G	single	intron	6	1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF,WUGSC_SSAHASNP,	2	0.082342
ACAD9	chr3	128609254	128609255	rs13434201	+	T	A/T	single	intron	6	1000GENOMES,BUSHMAN,ILLUMINA-UK,SSMP,TISHKOFF,WUGSC_SSAHASNP,	2	0.118132
ACAD9	chr3	128609283	128609284	rs142912887	+	G	A/G	single	intron	1	1000GENOMES,	2	0.031221
ACAD9	chr3	128609310	128609311	rs71331617	+	C	C/T	single	intron	8	1000GENOMES,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF,	2	0.555199
ACAD9	chr3	128609326	128609327	rs148035542	+	T	C/T	single	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.055096
ACAD9	chr3	128609522	128609523	rs141759595	+	C	C/T	single	intron	2	1000GENOMES,SSMP,	2	0.962810
ACAD9	chr3	128609678	128609679	rs114145289	+	T	C/T	single	intron	3	1000GENOMES,ILLUMINA,TISHKOFF,	2	0.022213
ACAD9	chr3	128609701	128609702	rs184937941	+	T	G/T	single	intron	1	1000GENOMES,	2	0.015611
ACAD9	chr3	128609745	128609746	rs139643158	+	G	A/G	single	intron	1	1000GENOMES,	2	0.011938
ACAD9	chr3	128609976	128609977	rs78314245	+	C	C/T	single	intron	4	1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.982569
ACAD9	chr3	128610014	128610015	rs62268189	+	A	A/G	single	intron	5	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,TISHKOFF,	2	0.945413
ACAD9	chr3	128610628	128610629	rs6791451	+	T	C/T	single	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,	2	0.641900
ACAD9	chr3	128612085	128612088	rs145182927	+	ATG	-/ATG	deletion	intron	2	1000GENOMES,LUNTER,	2	0.032599
ACAD9	chr3	128612112	128612113	rs1683811	+	A	A/C	single	intron	11	1000GENOMES,ABI,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,	2	0.664227
ACAD9	chr3	128612228	128612229	rs6806468	+	A	A/T	single	intron	9	1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,PJP,TISHKOFF,WI_SSAHASNP,	2	0.909906
ACAD9	chr3	128612561	128612562	rs10460833	+	A	A/G	single	intron	10	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,ILLUMINA,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.943250
ACAD9	chr3	128612658	128612659	rs1680780	+	G	C/G	single	intron	15	1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.487893
ACAD9	chr3	128612829	128612830	rs1680781	+	C	A/C	single	intron	17	1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PERLEGEN,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.475880
ACAD9	chr3	128612999	128613000	rs142860593	+	T	C/T	single	intron	1	1000GENOMES,	2	0.016070
ACAD9	chr3	128613142	128613143	rs62268190	+	A	A/G	single	intron	6	1000GENOMES,BCMHGSC_JDW,ENSEMBL,PJP,SSMP,TISHKOFF,	2	0.944037
ACAD9	chr3	128613390	128613391	rs57147056	+	T	A/T	single	intron	6	1000GENOMES,ENSEMBL,HGSV,HUMANGENOME_JCVI,PJP,SSMP,	2	0.111366
ACAD9	chr3	128613523	128613524	rs79986808	+	G	A/G	single	intron	4	1000GENOMES,GMI,SSMP,TISHKOFF,	2	0.077894
ACAD9	chr3	128613526	128613527	rs150053865	+	C	C/T	single	intron	1	1000GENOMES,	2	0.987603
ACAD9	chr3	128613765	128613766	rs140879975	+	C	C/G	single	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.943526
ACAD9	chr3	128613843	128613844	rs144311840	+	T	C/T	single	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.054178
ACAD9	chr3	128614003	128614004	rs143463639	+	G	A/G	single	intron	1	1000GENOMES,	2	0.031221
ACAD9	chr3	128614132	128614133	rs1683791	+	C	C/T	single	intron	22	1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.355979
ACAD9	chr3	128614184	128614185	rs1680778	+	A	A/C	single	coding-synon,ncRNA	24	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SC_JCM,SEATTLESEQ,SSMP,TISHKOFF,	3	0.501608
ACAD9	chr3	128614539	128614540	rs62268191	+	C	C/T	single	intron	6	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,SSMP,TISHKOFF,	2	0.945005
ACAD9	chr3	128614562	128614562	rs111842935	+	-	-/CTC/TC	insertion	intron,cds-indel	2	1000GENOMES,BUSHMAN,	3	0.365138
ACAD9	chr3	128614565	128614565	rs200704935	+	-	-/C	insertion	intron	1	1000GENOMES,	2	0.420569
ACAD9	chr3	128614769	128614770	rs1680779	+	G	A/G	single	intron	16	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.535933
ACAD9	chr3	128616301	128616304	rs201894239	+	GAG	-/GAG	deletion	intron	2	1000GENOMES,LUNTER,	2	0.011938
ACAD9	chr3	128616324	128616325	rs1683804	+	C	C/T	single	intron	19	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.346939
ACAD9	chr3	128616358	128616359	rs789213	-	C	C/G	single	intron	16	1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,KWOK,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.341772
ACAD9	chr3	128616715	128616716	rs76764354	+	T	A/T	single	intron	1	1000GENOMES,	2	0.013490
ACAD9	chr3	128616751	128616752	rs34638819	+	G	A/G	single	intron	10	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,	2	0.112077
ACAD9	chr3	128617248	128617249	rs79398737	+	T	G/T	single	intron	2	1000GENOMES,ILLUMINA-UK,	2	0.035780
ACAD9	chr3	128617331	128617331	rs200124262	+	-	lengthTooLong	in-del	intron	2	1000GENOMES,TISHKOFF,	2	0.966942
ACAD9	chr3	128617412	128617412	rs147931805	+	-	-/T	insertion	intron	2	1000GENOMES,LUNTER,	2	0.951791
ACAD9	chr3	128617425	128617426	rs73210606	+	A	A/G	single	intron	1	1000GENOMES,	2	0.966493
ACAD9	chr3	128617789	128617790	rs1979528	+	T	G/T	single	intron	7	1000GENOMES,ABI,BCMHGSC_JDW,SSMP,TISHKOFF,TSC-CSHL,WI_SSAHASNP,	2	0.071192
ACAD9	chr3	128618282	128618283	rs1979529	+	T	C/T	single	coding-synon,ncRNA	10	1000GENOMES,BCMHGSC_JDW,CLINSEQ_SNP,CORNELL,CSHL-HAPMAP,ENSEMBL,ILLUMINA,NHLBI-ESP,SSMP,TSC-CSHL,	2	0.028382
ACAD9	chr3	128618365	128618366	rs2340466	+	G	C/G/T	single	intron	3	1000GENOMES,SC_JCM,TSC-CSHL,	3	0.003484
ACAD9	chr3	128618770	128618771	rs73210607	+	A	A/G	single	intron	1	1000GENOMES,	2	0.967363
ACAD9	chr3	128619165	128619166	rs149575458	+	C	C/T	single	intron	1	1000GENOMES,	2	0.968779
ACAD9	chr3	128619236	128619237	rs115225846	+	C	C/T	single	intron	1	1000GENOMES,	2	0.966928
ACAD9	chr3	128619323	128619324	rs62268192	+	G	A/G	single	intron	4	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,	2	0.054587
ACAD9	chr3	128619356	128619357	rs813732	-	C	A/G	single	intron	16	1000GENOMES,ABI,BCM_SSAHASNP,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.458410
ACAD9	chr3	128619357	128619358	rs148551394	+	G	A/G	single	intron	2	1000GENOMES,SSMP,	2	0.054178
ACAD9	chr3	128619483	128619484	rs142564404	+	G	G/T	single	intron	1	1000GENOMES,	2	0.983930
ACAD9	chr3	128619504	128619505	rs16852133	+	T	C/T	single	intron	3	1000GENOMES,PERLEGEN,SSMP,	2	0.054741
ACAD9	chr3	128619682	128619683	rs6809299	+	G	A/G	single	intron	12	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.121683
ACAD9	chr3	128619734	128619735	rs6809152	+	C	C/T	single	intron	11	1000GENOMES,ABI,BCM-HGSC-SUB,BCM_SSAHASNP,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.878552
ACAD9	chr3	128620003	128620004	rs76439060	+	C	C/T	single	intron	3	1000GENOMES,GMI,SSMP,	2	0.988686
ACAD9	chr3	128620267	128620268	rs146195726	+	C	-/C	deletion	intron	3	1000GENOMES,SSMP,WARNICH_LAB,	2	0.037190
ACAD9	chr3	128620387	128620388	rs1680795	-	T	A/G	single	intron	11	1000GENOMES,ABI,BCM_SSAHASNP,BL,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,SC_JCM,SSMP,	2	0.706581
ACAD9	chr3	128620389	128620390	rs1680794	-	A	C/T	single	intron	16	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PJP,SC_JCM,SSMP,TISHKOFF,	2	0.517966
ACAD9	chr3	128620405	128620406	rs115920138	+	C	C/T	single	intron	1	1000GENOMES,	2	0.980836
ACAD9	chr3	128620725	128620726	rs73862591	+	G	G/T	single	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.983486
ACAD9	chr3	128620754	128620755	rs115385161	+	T	C/T	single	intron	1	1000GENOMES,	2	0.018293
ACAD9	chr3	128621039	128621040	rs7639482	+	C	C/T	single	intron	5	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,WI_SSAHASNP,	2	0.946379
ACAD9	chr3	128621362	128621363	rs7617561	+	A	A/G	single	intron	10	1000GENOMES,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,ENSEMBL,ILLUMINA,NHLBI-ESP,PJP,SSMP,WI_SSAHASNP,	2	0.966848
ACAD9	chr3	128621737	128621738	rs62268194	+	T	C/T	single	intron	5	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,SSMP,	2	0.054079
ACAD9	chr3	128622277	128622278	rs62268195	+	T	C/T	single	intron	4	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,	2	0.053670
ACAD9	chr3	128622358	128622359	rs12485571	+	C	C/T	single	intron	8	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BL,CSHL-HAPMAP,ENSEMBL,ILLUMINA,TISHKOFF,	2	0.920018
ACAD9	chr3	128622604	128622605	rs66903181	+	G	A/G	single	intron	7	1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSMP,TISHKOFF,	2	0.121795
ACAD9	chr3	128622741	128622742	rs66521976	+	G	A/G	single	intron	8	1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,SSMP,TISHKOFF,	2	0.121795
ACAD9	chr3	128622759	128622760	rs1683776	+	G	G/T	single	intron	14	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,	2	0.695312
ACAD9	chr3	128622921	128622922	rs115532916	+	G	A/C/G	single	ncRNA,missense	6	1000GENOMES,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,OMIM-CURATED-RECORDS,	2	0.013100
ACAD9	chr3	128623404	128623405	rs73210609	+	C	C/T	single	intron	3	1000GENOMES,CLINSEQ_SNP,ILLUMINA,	2	0.974492
ACAD9	chr3	128623756	128623757	rs62265261	+	G	G/T	single	intron	4	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,	2	0.962385
ACAD9	chr3	128623784	128623785	rs61096019	+	C	C/T	single	intron	6	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,SSMP,TISHKOFF,	2	0.870302
ACAD9	chr3	128623965	128623966	rs62265262	+	A	A/G	single	intron	4	1000GENOMES,BCMHGSC_JDW,ENSEMBL,SSMP,	2	0.945872
ACAD9	chr3	128624006	128624008	rs200697619	+	AC	-/AC	deletion	intron	1	1000GENOMES,	2	0.057851
ACAD9	chr3	128624007	128624008	rs142176941	+	C	-/C	deletion	intron	4	1000GENOMES,GMI,LUNTER,SSMP,	2	0.059688
ACAD9	chr3	128624302	128624303	rs56396516	+	G	A/G	single	intron	3	1000GENOMES,HGSV,ILLUMINA,	2	0.017406
ACAD9	chr3	128624503	128624504	rs73210611	+	G	A/G	single	intron	1	1000GENOMES,	2	0.032637
ACAD9	chr3	128624548	128624549	rs112685626	+	G	A/G	single	intron	4	1000GENOMES,BCM-HGSC-SUB,ILLUMINA,SSMP,	2	0.024369
ACAD9	chr3	128624771	128624772	rs2630252	+	T	C/T	single	intron	14	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.319296
ACAD9	chr3	128624809	128624810	rs7651896	+	C	C/T	single	intron	7	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,ILLUMINA,SSMP,WI_SSAHASNP,	2	0.949693
ACAD9	chr3	128624879	128624880	rs1683777	+	T	G/T	single	intron	22	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PJP,SC_JCM,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.524689
ACAD9	chr3	128625198	128625199	rs7652449	+	G	A/G	single	intron	6	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,SSMP,WI_SSAHASNP,	2	0.054029
ACAD9	chr3	128625241	128625242	rs35020699	+	C	C/T	single	intron	9	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,	2	0.907594
ACAD9	chr3	128625244	128625245	rs7652295	+	C	C/T	single	intron	6	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,SSMP,WI_SSAHASNP,	2	0.945513
ACAD9	chr3	128625317	128625318	rs1680788	+	C	C/T	single	intron	18	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,PJP,SC_JCM,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.481979
ACAD9	chr3	128625492	128625493	rs62265263	+	C	C/T	single	intron	5	1000GENOMES,BCMHGSC_JDW,BUSHMAN,ENSEMBL,SSMP,	2	0.945896

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