Folate SNPs in CpG Data
Gene Symbol | Chromosome | CpG Start | CpG End | CpG Count | SNP Start | SNP End | rsID | Strand | ref NCBI | Observed | C+G Count | CpG% | GC% | Observed-Expected Ratio | Function |
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TCN1 | chr17 | 26732812 | 26733396 | CpG:64 | 26733114 | 26733115 | rs375478405 | + | G | A/G | 429 | 21.9 | 73.5 | 0.81 | coding-syno |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657609 | 657610 | rs367994610 | + | G | C/G | 921 | 21 | 68.5 | 0.9 | intron,untr |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657645 | 657730 | rs34743033 | + | CCGCGCCACTT | lengthTooLo | 921 | 21 | 68.5 | 0.9 | unknown |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657645 | 657701 | rs45445694 | + | CCGCGCCACTT | lengthTooLo | 921 | 21 | 68.5 | 0.9 | unknown |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657656 | 657657 | rs183205964 | + | G | C/G | 921 | 21 | 68.5 | 0.9 | intron,untr |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657684 | 657685 | rs2853542 | + | G | C/G | 921 | 21 | 68.5 | 0.9 | intron,untr |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657784 | 657785 | rs188268314 | + | C | C/T | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657819 | 657820 | rs201958231 | + | G | G/T | 921 | 21 | 68.5 | 0.9 | coding-syno |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 657933 | 657934 | rs201007284 | + | C | C/G | 921 | 21 | 68.5 | 0.9 | coding-syno |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658000 | 658001 | rs73366471 | + | G | A/G | 921 | 21 | 68.5 | 0.9 | intron,nons |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658023 | 658024 | rs200637090 | + | G | A/G | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658034 | 658035 | rs77400748 | + | A | A/G | 921 | 21 | 68.5 | 0.9 | coding-syno |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658047 | 658048 | rs190076880 | + | C | C/G | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658056 | 658057 | rs370824496 | + | A | A/G | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658063 | 658064 | rs2853533 | + | G | C/G | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658065 | 658066 | rs368711614 | + | G | A/G | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658071 | 658072 | rs371383896 | + | G | G/T | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658096 | 658097 | rs373697938 | + | A | A/G | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658108 | 658109 | rs151221029 | + | G | G/T | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658120 | 658121 | rs201596180 | + | T | C/T | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658146 | 658147 | rs182344736 | + | C | A/C | 921 | 21 | 68.5 | 0.9 | intron,miss |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658148 | 658149 | rs371604300 | + | C | C/T | 921 | 21 | 68.5 | 0.9 | coding-syno |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658169 | 658170 | rs28602966 | + | G | G/T | 921 | 21 | 68.5 | 0.9 | intron,nons |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658286 | 658287 | rs142008740 | + | T | C/T | 921 | 21 | 68.5 | 0.9 | intron,untr |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658331 | 658332 | rs72634355 | + | C | C/T | 921 | 21 | 68.5 | 0.9 | intron,untr |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658332 | 658333 | rs376122364 | + | C | C/T | 921 | 21 | 68.5 | 0.9 | intron,untr |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658416 | 658417 | rs75047328 | + | G | G/T | 921 | 21 | 68.5 | 0.9 | intron,near |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658422 | 658423 | rs3891167 | + | A | A/G | 921 | 21 | 68.5 | 0.9 | intron,near |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658429 | 658430 | rs2847612 | + | G | C/G | 921 | 21 | 68.5 | 0.9 | intron,near |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658446 | 658447 | rs369135185 | + | C | C/T | 921 | 21 | 68.5 | 0.9 | intron,near |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658534 | 658540 | rs111834869 | + | AGTATA | -/AGTATA | 921 | 21 | 68.5 | 0.9 | intron,near |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658537 | 658543 | rs77497635 | + | ATAAGT | -/ATAAGT | 921 | 21 | 68.5 | 0.9 | intron,near |
TYMS | chr18 | 657401 | 658745 | CpG:141 | 658589 | 658590 | rs192603316 | + | C | C/T | 921 | 21 | 68.5 | 0.9 | intron,near |