Folate SNPs in CpG Data

Gene Symbol	Chromosome	CpG Start	CpG End	CpG Count	SNP Start	SNP End	rsID	Strand	ref NCBI	Observed	C+G Count	CpG%	GC%	Observed-Expected Ratio	Function
ABCB1	chr7	87256958	87258444	CpG:132	87258076	87258077	rs79138540	+	T	A/T	963	17.8	64.8	0.85	intron,untr
ABCB1	chr7	87256958	87258444	CpG:132	87258168	87258169	rs201345739	+	C	C/T	963	17.8	64.8	0.85	coding-syno
ABCB1	chr7	87256958	87258444	CpG:132	87258196	87258197	rs369026321	+	G	A/G	963	17.8	64.8	0.85	intron,miss
ABCB1	chr7	87256958	87258444	CpG:132	87258206	87258207	rs200865226	+	G	A/G	963	17.8	64.8	0.85	intron,miss
ABCB1	chr7	87256958	87258444	CpG:132	87258208	87258209	rs372672361	+	C	C/T	963	17.8	64.8	0.85	coding-syno
ABCB1	chr7	87256958	87258444	CpG:132	87258234	87258235	rs375335209	+	G	A/G	963	17.8	64.8	0.85	coding-syno
ABCB1	chr7	87256958	87258444	CpG:132	87258264	87258265	rs376905411	+	C	A/C	963	17.8	64.8	0.85	intron
ABCB1	chr7	87256958	87258444	CpG:132	87258290	87258291	rs199898687	+	C	C/T	963	17.8	64.8	0.85	intron
ABCB1	chr7	87256958	87258444	CpG:132	87258293	87258294	rs202139420	+	C	C/T	963	17.8	64.8	0.85	intron
ABCB1	chr7	87256958	87258444	CpG:132	87258296	87258297	rs370537587	+	G	A/G	963	17.8	64.8	0.85	intron
ABCB1	chr7	87256958	87258444	CpG:132	87258403	87258404	rs2157928	-	G	C/T	963	17.8	64.8	0.85	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043634	16043635	rs177339	-	C	C/G	447	20.9	63	1.06	coding-syno
ABCC1	chr16	16043218	16043927	CpG:74	16043660	16043661	rs182752194	+	G	A/G	447	20.9	63	1.06	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043766	16043767	rs372392599	+	C	C/T	447	20.9	63	1.06	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043874	16043875	rs12924449	+	G	A/G	447	20.9	63	1.06	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043887	16043888	rs8045000	+	C	C/T	447	20.9	63	1.06	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043889	16043890	rs185795826	+	C	C/T	447	20.9	63	1.06	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043904	16043905	rs369301958	+	G	G/T	447	20.9	63	1.06	intron
ABCC1	chr16	16043218	16043927	CpG:74	16043907	16043908	rs372711690	+	G	C/G	447	20.9	63	1.06	intron
ABCC2	chr10	101599887	101600226	CpG:45	101600082	101600122	rs71281891	+	GCGACTGTCCT	-/CTGGCTCCG	240	26.5	70.8	1.08	unknown
ABCC2	chr10	101599887	101600226	CpG:45	101600092	101600093	rs75691097	-	T	A/G	240	26.5	70.8	1.08	unknown
ABCC2	chr10	101599887	101600226	CpG:45	101600141	101600142	rs79763505	-	G	C/T	240	26.5	70.8	1.08	unknown
ABCC2	chr10	101599887	101600226	CpG:45	101600155	101600156	rs78178433	+	C	C/G	240	26.5	70.8	1.08	unknown
ABCC2	chr10	101599887	101600226	CpG:45	101600156	101600157	rs4041739	-	G	C/T	240	26.5	70.8	1.08	unknown
ABCC2	chr10	101599887	101600226	CpG:45	101600208	101600209	rs55999969	+	G	A/G	240	26.5	70.8	1.08	unknown
AHYC	chr1	110527248	110528026	CpG:64	110527438	110527439	rs187624731	+	G	C/G	449	16.5	57.7	0.99	untranslate
AHYC	chr1	110527248	110528026	CpG:64	110527471	110527472	rs17551493	+	G	A/G	449	16.5	57.7	0.99	untranslate
AHYC	chr1	110527248	110528026	CpG:64	110527608	110527609	rs374954261	+	G	A/G	449	16.5	57.7	0.99	untranslate
AHYC	chr1	110527248	110528026	CpG:64	110527615	110527623	rs199812645	+	CGCCAGAG	-/CGCCAGAG	449	16.5	57.7	0.99	untranslate
AHYC	chr1	110527248	110528026	CpG:64	110527660	110527661	rs373119018	+	G	G/T	449	16.5	57.7	0.99	untranslate
AHYC	chr1	110527248	110528026	CpG:64	110527699	110527700	rs138482585	+	T	C/T	449	16.5	57.7	0.99	missense,un
AHYC	chr1	110527248	110528026	CpG:64	110527706	110527707	rs376871099	+	G	G/T	449	16.5	57.7	0.99	coding-syno
AHYC	chr1	110527248	110528026	CpG:64	110527733	110527734	rs11544575	+	G	A/G	449	16.5	57.7	0.99	coding-syno
AHYC	chr1	110527248	110528026	CpG:64	110527757	110527758	rs138952380	+	C	C/T	449	16.5	57.7	0.99	coding-syno
AHYC	chr1	110527248	110528026	CpG:64	110527799	110527800	rs371518956	+	G	G/T	449	16.5	57.7	0.99	intron,untr
AHYC	chr1	110527248	110528026	CpG:64	110527854	110527855	rs59450932	+	C	C/T	449	16.5	57.7	0.99	intron,untr
AHYC	chr1	110527248	110528026	CpG:64	110527946	110527947	rs371159956	+	C	C/T	449	16.5	57.7	0.99	intron,untr
ALDH1L1	chr3	125898662	125899568	CpG:73	125898702	125898703	rs149332173	+	C	C/T	589	16.1	65	0.76	intron,near
ALDH1L1	chr3	125898662	125899568	CpG:73	125898721	125898722	rs73859028	+	C	C/T	589	16.1	65	0.76	intron,near
ALDH1L1	chr3	125898662	125899568	CpG:73	125898774	125898775	rs4646697	-	G	C/T	589	16.1	65	0.76	intron,near
ALDH1L1	chr3	125898662	125899568	CpG:73	125898908	125898909	rs112677404	+	G	A/G	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125898937	125898938	rs114261500	+	G	G/T	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125898952	125898953	rs140046519	+	T	C/T	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125898991	125898992	rs118120428	+	G	A/G	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899008	125899009	rs372299632	+	C	C/T	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899015	125899016	rs370339206	+	T	C/T	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899064	125899065	rs186354810	+	G	G/T	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899066	125899067	rs4646696	-	C	C/G	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899115	125899116	rs190705019	+	G	A/G	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899125	125899126	rs143591004	+	A	A/C	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899177	125899178	rs41266453	+	G	A/G	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899306	125899307	rs377209389	+	C	C/T	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899508	125899509	rs148891899	+	G	-/G	589	16.1	65	0.76	intron,ncRN
ALDH1L1	chr3	125898662	125899568	CpG:73	125899508	125899509	rs182989946	+	G	C/G	589	16.1	65	0.76	intron,ncRN
ATIC	chr2	216176549	216177132	CpG:62	216176774	216176775	rs13029548	+	C	C/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176779	216176780	rs28366034	+	C	C/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176790	216176791	rs117281478	+	C	C/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176804	216176805	rs370025109	+	C	C/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176806	216176807	rs4535042	+	T	G/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176823	216176824	rs28366035	+	C	C/G/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176842	216176843	rs11550205	+	C	C/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176850	216176851	rs11550203	+	C	C/T	429	21.3	73.6	0.79	untranslate
ATIC	chr2	216176549	216177132	CpG:62	216176869	216176870	rs138988481	+	C	C/T	429	21.3	73.6	0.79	missense
ATIC	chr2	216176549	216177132	CpG:62	216176873	216176874	rs11550204	+	C	C/G	429	21.3	73.6	0.79	coding-syno
ATIC	chr2	216176549	216177132	CpG:62	216176909	216176910	rs368820754	+	T	A/T	429	21.3	73.6	0.79	intron
ATIC	chr2	216176549	216177132	CpG:62	216176959	216176960	rs113290372	+	C	C/T	429	21.3	73.6	0.79	intron
ATIC	chr2	216176549	216177132	CpG:62	216176977	216176978	rs190514165	+	G	A/G	429	21.3	73.6	0.79	intron
ATIC	chr2	216176549	216177132	CpG:62	216176990	216176991	rs370672880	+	G	A/G	429	21.3	73.6	0.79	intron
ATIC	chr2	216176549	216177132	CpG:62	216177069	216177070	rs113493543	+	A	A/G	429	21.3	73.6	0.79	intron
CBS	chr21	44473839	44474083	CpG:20	44473858	44473860	rs371480441	+	TG	-/TG	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473866	44473867	rs1051319	-	G	C/G	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473882	44473887	rs71872941	+	GCCAG	-/GCCAG	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473884	44473889	rs375037300	+	CAGGC	-/CAGGC	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473908	44473909	rs115406358	+	C	C/T	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473909	44473910	rs141447394	+	G	A/G	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473932	44473933	rs375308003	+	G	A/G	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473955	44473956	rs374464201	+	C	C/T	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473961	44473962	rs367597108	+	C	C/T	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473962	44473963	rs55646248	+	G	A/G	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473967	44473968	rs1051316	-	G	C/T	157	16.4	64.3	0.79	intron,untr
CBS	chr21	44473839	44474083	CpG:20	44473971	44473972	rs200259659	+	C	C/T	157	16.4	64.3	0.79	untranslate
CBS	chr21	44473839	44474083	CpG:20	44473972	44473973	rs368510850	+	G	A/G	157	16.4	64.3	0.79	untranslate
CBS	chr21	44473839	44474083	CpG:20	44473979	44473980	rs9978104	+	G	G/T	157	16.4	64.3	0.79	untranslate
CBS	chr21	44473839	44474083	CpG:20	44474001	44474002	rs143945898	+	C	C/G	157	16.4	64.3	0.79	coding-syno
CBS	chr21	44473839	44474083	CpG:20	44474002	44474003	rs150828989	+	C	C/T	157	16.4	64.3	0.79	missense
CBS	chr21	44473839	44474083	CpG:20	44474012	44474013	rs139651937	+	C	A/C	157	16.4	64.3	0.79	missense
CBS	chr21	44473839	44474083	CpG:20	44474029	44474030	rs121964968	-	A	C/T	157	16.4	64.3	0.79	missense
CBS	chr21	44473839	44474083	CpG:20	44474049	44474050	rs200743155	+	C	C/T	157	16.4	64.3	0.79	coding-syno
CBS	chr21	44473839	44474083	CpG:20	44474070	44474071	rs150037641	+	A	A/G	157	16.4	64.3	0.79	coding-syno
CBS	chr21	44473839	44474083	CpG:20	44474081	44474082	rs201916339	+	C	C/T	157	16.4	64.3	0.79	missense
CBS	chr21	44477654	44478065	CpG:29	44477664	44477665	rs111980951	+	G	A/G	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477725	44477756	rs72210077	+	ACCTGTTTGAG	lengthTooLo	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477735	44477736	rs13052765	+	G	A/G	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477737	44477738	rs13046443	+	C	C/T	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477738	44477739	rs147231912	+	G	C/G	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477751	44477752	rs13049958	+	T	C/T	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477766	44477767	rs13046893	+	A	A/G	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477771	44477772	rs13052774	+	G	A/C/G	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477777	44477778	rs13052870	+	G	C/G	260	14.1	63.3	0.71	intron
CBS	chr21	44477654	44478065	CpG:29	44477784	44477785	rs13046552	+	C	C/G	260	14.1	63.3	0.71	intron

‹ Prev

Next ›