Folate SNPs in CpG Data

Gene Symbol	Chromosome	CpG Start	CpG End	CpG Count	SNP Start	SNP End	rsID	Strand	ref NCBI	Observed	C+G Count	CpG%	GC%	Observed-Expected Ratio	Function
SLC25A32	chr21	46957315	46957916	CpG:46	46957689	46957690	rs148765362	+	C	C/T	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957692	46957693	rs142360873	+	G	A/G	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957707	46957708	rs146321452	+	C	C/G/T	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957721	46957722	rs139525055	+	T	C/T	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957735	46957736	rs368881793	+	G	A/G	427	15.3	71	0.64	coding-syno
SLC25A32	chr21	46957315	46957916	CpG:46	46957784	46957785	rs368296368	+	C	C/T	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957788	46957789	rs370529151	+	C	C/T	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957793	46957794	rs1051266	-	T	A/G	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957797	46957798	rs146545683	+	G	A/G	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957820	46957821	rs372174767	+	G	C/G	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957872	46957873	rs140904287	+	T	C/T	427	15.3	71	0.64	missense
SLC25A32	chr21	46957315	46957916	CpG:46	46957884	46957885	rs376494560	+	C	C/T	427	15.3	71	0.64	untranslate
SLC25A32	chr21	46957315	46957916	CpG:46	46957888	46957889	rs369590758	+	T	A/T	427	15.3	71	0.64	untranslate
SLC25A32	chr21	46957315	46957916	CpG:46	46957905	46957906	rs371753366	+	C	C/T	427	15.3	71	0.64	untranslate
SLC25A32	chr21	46957315	46957916	CpG:46	46957906	46957907	rs374919431	+	G	A/G	427	15.3	71	0.64	untranslate
SLC25A32	chr21	46957315	46957916	CpG:46	46957915	46957916	rs1131596	-	G	A/C/G/T	427	15.3	71	0.64	untranslate
SLC25A32	chr21	46961668	46963078	CpG:144	46961759	46961760	rs371169773	+	T	A/T	1028	20.4	72.9	0.8	intron
SLC25A32	chr21	46961668	46963078	CpG:144	46961807	46961808	rs147077731	+	G	C/G	1028	20.4	72.9	0.8	intron
SLC25A32	chr21	46961668	46963078	CpG:144	46961834	46961835	rs112870937	+	T	A/T	1028	20.4	72.9	0.8	intron
SLC25A32	chr21	46961668	46963078	CpG:144	46961902	46961903	rs4311136	+	G	C/G	1028	20.4	72.9	0.8	intron
SLC25A32	chr21	46961668	46963078	CpG:144	46961950	46961951	rs377485329	+	C	C/T	1028	20.4	72.9	0.8	intron
SLC25A32	chr21	46961668	46963078	CpG:144	46962082	46962083	rs7509787	+	G	C/G	1028	20.4	72.9	0.8	intron
SLC25A32	chr21	46961668	46963078	CpG:144	46962327	46962328	rs9977985	+	C	C/G	1028	20.4	72.9	0.8	untranslate
SLC46A1	chr8	104426894	104427823	CpG:98	104426903	104426905	rs202211338	+	CA	-/CA	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426904	104426905	rs10709873	+	A	-/A	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426905	104426906	rs5025988	+	A	A/C	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426905	104426907	rs139201908	+	AC	-/AC	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426907	104426908	rs5893653	+	G	C/G	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426907	104426908	rs367610017	+	G	-/G	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426909	104426910	rs5893654	+	T	-/T	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426909	104426910	rs114156661	+	T	C/T	593	21.1	63.8	1.04	intron,near
SLC46A1	chr8	104426894	104427823	CpG:98	104426979	104426980	rs369006861	+	G	A/G	593	21.1	63.8	1.04	intron,untr
SLC46A1	chr8	104426894	104427823	CpG:98	104426992	104426993	rs201906277	+	T	C/T	593	21.1	63.8	1.04	intron,untr
SLC46A1	chr8	104426894	104427823	CpG:98	104427010	104427011	rs138554712	+	C	C/T	593	21.1	63.8	1.04	untranslate
SLC46A1	chr8	104426894	104427823	CpG:98	104427030	104427031	rs376551963	+	G	C/G	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427037	104427038	rs149273860	+	A	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427047	104427048	rs369791895	+	G	A/G	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427050	104427051	rs144470699	+	C	A/C	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427063	104427064	rs373956646	+	G	G/T	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427164	104427165	rs377666609	+	T	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427167	104427168	rs370878481	+	G	A/G	593	21.1	63.8	1.04	ncRNA,untra
SLC46A1	chr8	104426894	104427823	CpG:98	104427192	104427193	rs372902714	+	G	A/G	593	21.1	63.8	1.04	ncRNA,untra
SLC46A1	chr8	104426894	104427823	CpG:98	104427219	104427220	rs377166611	+	T	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427227	104427228	rs370320899	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427233	104427234	rs3814106	-	C	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427255	104427256	rs199877106	+	T	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427289	104427290	rs148406806	+	A	A/C	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427293	104427294	rs374257876	+	T	C/T	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427294	104427295	rs143980576	+	T	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427303	104427304	rs182570628	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427338	104427339	rs146161228	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427344	104427345	rs186572903	+	A	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427349	104427350	rs140179211	+	G	A/G	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427353	104427354	rs146475888	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427358	104427359	rs3134295	+	A	A/C	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427364	104427365	rs372650826	+	C	A/C	593	21.1	63.8	1.04	ncRNA,nonse
SLC46A1	chr8	104426894	104427823	CpG:98	104427365	104427366	rs370523537	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427367	104427368	rs374192461	+	C	C/G	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427372	104427373	rs140524999	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427387	104427388	rs201140690	+	T	G/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427393	104427394	rs374464432	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427409	104427410	rs150014655	+	C	C/T	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427411	104427412	rs368359478	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427420	104427421	rs371786632	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427423	104427424	rs145230539	+	C	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427427	104427428	rs142367101	+	C	A/C	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427449	104427450	rs115332818	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427470	104427471	rs138240593	+	A	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427479	104427480	rs142266909	+	G	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427483	104427484	rs370976960	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427495	104427496	rs375532699	+	A	A/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427511	104427512	rs199976025	+	C	C/T	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427540	104427541	rs3134296	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427543	104427544	rs148247595	+	C	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427551	104427552	rs141239140	+	C	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427552	104427553	rs199979128	+	G	G/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427562	104427563	rs201933283	+	T	A/T	593	21.1	63.8	1.04	ncRNA,misse
TCN1	chr17	26732175	26732391	CpG:18	26732202	26732203	rs189103810	+	A	A/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732248	26732249	rs281875210	-	C	G/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732275	26732276	rs80338771	-	C	C/G	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732288	26732289	rs61732735	+	G	C/G	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732300	26732301	rs376191377	+	C	C/T	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732325	26732326	rs369191223	+	A	A/G	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732336	26732337	rs375678730	+	G	A/G	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732348	26732349	rs372432334	+	C	C/T	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732373	26732374	rs369959215	+	C	C/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732377	26732378	rs80338770	-	G	A/C/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732385	26732386	rs201076728	+	C	C/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732812	26733396	CpG:64	26732814	26732815	rs41297073	-	C	-/G	429	21.9	73.5	0.81	intron
TCN1	chr17	26732812	26733396	CpG:64	26732862	26732863	rs181017052	+	A	A/C	429	21.9	73.5	0.81	intron
TCN1	chr17	26732812	26733396	CpG:64	26732887	26732888	rs185140572	+	C	C/T	429	21.9	73.5	0.81	intron
TCN1	chr17	26732812	26733396	CpG:64	26732908	26732909	rs375346186	+	A	A/G	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26732934	26732936	rs154623632	-	GC	AA/GC	429	21.9	73.5	0.81	nonsense
TCN1	chr17	26732812	26733396	CpG:64	26732938	26732939	rs80338769	-	C	-/G	429	21.9	73.5	0.81	frameshift
TCN1	chr17	26732812	26733396	CpG:64	26732939	26732940	rs375000218	+	C	A/C	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26732943	26732944	rs41297071	-	C	C/G/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26732974	26732975	rs41297069	-	G	C/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733035	26733036	rs368562168	+	T	A/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733047	26733048	rs41297067	-	C	A/G	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733110	26733111	rs41297065	-	G	C/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733114	26733115	rs375478405	+	G	A/G	429	21.9	73.5	0.81	coding-syno
TYMS	chr18	657401	658745	CpG:141	657609	657610	rs367994610	+	G	C/G	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	657645	657730	rs34743033	+	CCGCGCCACTT	lengthTooLo	921	21	68.5	0.9	unknown
TYMS	chr18	657401	658745	CpG:141	657645	657701	rs45445694	+	CCGCGCCACTT	lengthTooLo	921	21	68.5	0.9	unknown
TYMS	chr18	657401	658745	CpG:141	657656	657657	rs183205964	+	G	C/G	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	657684	657685	rs2853542	+	G	C/G	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	657784	657785	rs188268314	+	C	C/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	657819	657820	rs201958231	+	G	G/T	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	657933	657934	rs201007284	+	C	C/G	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	658000	658001	rs73366471	+	G	A/G	921	21	68.5	0.9	intron,nons
TYMS	chr18	657401	658745	CpG:141	658023	658024	rs200637090	+	G	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658034	658035	rs77400748	+	A	A/G	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	658047	658048	rs190076880	+	C	C/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658056	658057	rs370824496	+	A	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658063	658064	rs2853533	+	G	C/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658065	658066	rs368711614	+	G	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658071	658072	rs371383896	+	G	G/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658096	658097	rs373697938	+	A	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658108	658109	rs151221029	+	G	G/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658120	658121	rs201596180	+	T	C/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658146	658147	rs182344736	+	C	A/C	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658148	658149	rs371604300	+	C	C/T	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	658169	658170	rs28602966	+	G	G/T	921	21	68.5	0.9	intron,nons
TYMS	chr18	657401	658745	CpG:141	658286	658287	rs142008740	+	T	C/T	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	658331	658332	rs72634355	+	C	C/T	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	658332	658333	rs376122364	+	C	C/T	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	658416	658417	rs75047328	+	G	G/T	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658422	658423	rs3891167	+	A	A/G	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658429	658430	rs2847612	+	G	C/G	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658446	658447	rs369135185	+	C	C/T	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658534	658540	rs111834869	+	AGTATA	-/AGTATA	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658537	658543	rs77497635	+	ATAAGT	-/ATAAGT	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658589	658590	rs192603316	+	C	C/T	921	21	68.5	0.9	intron,near

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