Folate SNP Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
TYMS	chr 18	658063	658064	rs2853533	+	G	C/G	intron,missense	15	1000GENOMES,BGI,BUSHMAN,CGAP-GAI,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,MGC_GENOME_DIFF,NHLBI-ESP,SC_J	2	0.316397
TYMS	chr 18	671025	671026	rs2853534	+	C	C/T	intron,untransl	18	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.518028
TYMS	chr 18	671056	671057	rs2853535	+	C	C/T	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.517115
TYMS	chr 18	671519	671520	rs2853536	+	C	C/T	intron,untransl	18	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,P	2	0.515632
TYMS	chr 18	671647	671648	rs2853537	+	A	A/T	intron,untransl	15	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,	2	0.507916
TYMS	chr 18	672287	672288	rs2853538	+	C	C/T	intron,untransl	16	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.515718
TYMS	chr 18	659828	659829	rs2853539	+	A	A/G	intron,near-gen	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,E	2	0.400182
TYMS	chr 18	657684	657685	rs2853542	+	G	C/G	intron,untransl	5	1000GENOMES,CGAP-GAI,COMPLETE_GENOMICS,SC_JCM,SSMP,	2	0.38578
TYMS	chr 18	666506	666507	rs2853543	+	C	C/G	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.488242
TYMS	chr 18	671104	671105	rs2853740	+	T	C/T	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.435435
TYMS	chr 18	658169	658170	rs28602966	+	G	G/T	intron,nonsense	6	1000GENOMES,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SSAHASNP,SSMP,	2	0.983012
TYMS	chr 18	662521	662522	rs2925470	-	T	A/T	intron	3	1000GENOMES,GMI,SC_JCM,	2	0.650138
TYMS	chr 18	666272	666273	rs34007153	+	C	A/C	intron	3	1000GENOMES,ILLUMINA,SNP500CANCER,	2	0.022047
TYMS	chr 18	673450	673451	rs34489327	+	T	-/TTA	intron,cds-inde	1	SNP500CANCER,	2	0.470052
TYMS	chr 18	666264	666265	rs34502878	+	C	C/T	intron	5	1000GENOMES,BGI,GMI,SNP500CANCER,SSMP,	2	0.933872
TYMS	chr 18	657645	657730	rs34743033	+	CC	lengt	unknown	1	SNP500CANCER,	3	0.336816
TYMS	chr 18	669295	669295	rs34795969	+	-	-/ATT	intron	1	SNP500CANCER,	2	0.520154
TYMS	chr 18	670471	670472	rs35143366	+	C	C/T	intron,untransl	2	1000GENOMES,SNP500CANCER,	2	0.986825
TYMS	chr 18	669186	669187	rs35710611	+	C	C/T	intron	4	1000GENOMES,ILLUMINA,NHLBI-ESP,SNP500CANCER,	2	0.988754
TYMS	chr 18	666532	666533	rs36080427	+	G	G/T	intron	2	1000GENOMES,SNP500CANCER,	2	0.986841
TYMS	chr 18	662246	662247	rs3786362	-	A	C/T	coding-synon	11	1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,SEATTLESEQ,SSMP,	2	0.028828
TYMS	chr 18	670887	670888	rs3826626	-	T	A/G	intron,untransl	12	1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,	2	0.913225
TYMS	chr 18	658422	658423	rs3891167	+	A	A/G	intron,near-gen	17	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,DEVINE_LAB,ENSEMBL,GMI,ILLUMINA-UK,PJP,SC_JCM,SEQUENOM,	2	0.78503
TYMS	chr 18	657645	657701	rs45445694	+	CC	lengt	unknown	1	PHARMGKB_PAAR-SJCRH,	6	0.428094
TYMS	chr 18	659176	659177	rs4987088	+	G	A/G	intron,near-gen	3	1000GENOMES,PERLEGEN,SNP500CANCER,	2	0.011754
TYMS	chr 18	659148	659149	rs4987089	+	A	A/G	intron,near-gen	3	1000GENOMES,PERLEGEN,SNP500CANCER,	2	0.98898
TYMS	chr 18	659235	659236	rs502396	+	C	C/T	intron,near-gen	18	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,	2	0.627612
TYMS	chr 18	671049	671050	rs523998	-	T	A/G	intron,untransl	5	1000GENOMES,ABI,BCM-HGSC-SUB,BL,SC_JCM,	2	0.964915
TYMS	chr 18	666099	666100	rs55688320	+	A	A/C	intron	7	BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.25
TYMS	chr 18	666073	666074	rs55742849	+	A	A/G	intron	8	1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,	2	0.883349
TYMS	chr 18	665840	665841	rs55867764	+	G	A/G	intron	4	1000GENOMES,GMI,HGSV,SSMP,	2	0.01607
TYMS	chr 18	666031	666032	rs55897736	+	C	C/T	intron	6	1000GENOMES,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.931319
TYMS	chr 18	666096	666097	rs55906508	+	C	C/G	intron	7	BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.25
TYMS	chr 18	666036	666037	rs56380264	+	A	A/G	intron	5	1000GENOMES,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.93945
TYMS	chr 18	665842	665843	rs56405278	+	T	C/T	intron	4	1000GENOMES,GMI,HGSV,SSMP,	2	0.011478
TYMS	chr 18	671976	671977	rs60279109	+	A	A/G	intron,untransl	11	1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SSMP,TISHKOFF,	2	0.517399
TYMS	chr 18	666932	666933	rs62090121	+	T	A/T	intron	4	1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,	2	0.099083
TYMS	chr 18	666938	666939	rs62090122	+	A	A/T	intron	5	1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,SSMP,	2	0.674312
TYMS	chr 18	666962	666963	rs62090123	+	A	A/T	intron	5	1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,SSMP,	2	0.765138
TYMS	chr 18	660441	660442	rs66567989	+	A	-/A	intron	8	1000GENOMES,BILGI_BIOE,DEVINE_LAB,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,	2	0.072477
TYMS	chr 18	673015	673016	rs699517	+	C	C/T	untranslated-3	24	1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILL	2	0.520312
TYMS	chr 18	669760	669764	rs72086130	+	CT	-/CTC	intron	6	1000GENOMES,BILGI_BIOE,BUSHMAN,DEVINE_LAB,LUNTER,SSMP,	2	0.089908
TYMS	chr 18	658331	658332	rs72634355	+	C	C/T	intron,untransl	7	1000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.712385
TYMS	chr 18	668519	668520	rs72867160	+	T	G/T	intron	7	1000GENOMES,BL,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.072936
TYMS	chr 18	658000	658001	rs73366471	+	G	A/G	intron,nonsense	7	1000GENOMES,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.019266
TYMS	chr 18	660155	660156	rs73366479	+	A	A/G	intron,near-gen	3	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,	2	0.983945
TYMS	chr 18	658416	658417	rs75047328	+	G	G/T	intron,near-gen	4	1000GENOMES,GMI,SSMP,TISHKOFF,	2	0.989556
TYMS	chr 18	660366	660367	rs75075985	+	T	A/T	intron	4	1000GENOMES,BGI,GMI,SSMP,	2	0.072237
TYMS	chr 18	658034	658035	rs77400748	+	A	A/G	coding-synon,in	4	1000GENOMES,GMI,NHLBI-ESP,SSMP,	2	0.977961
TYMS	chr 18	669839	669840	rs77404636	+	T	C/T	intron	4	1000GENOMES,BGI,GMI,SSMP,	2	0.073977
TYMS	chr 18	667820	667821	rs78835614	+	C	C/T	intron	5	1000GENOMES,BGI,GMI,ILLUMINA,SSMP,	2	0.926458
TYMS	chr 18	664751	664752	rs79833699	+	C	C/T	intron	4	1000GENOMES,ENSEMBL,GMI,SSMP,	2	0.637156
TYMS	chr 18	666624	666625	rs8088781	+	C	C/T	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SNP500CANCER,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.910945

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