Folate SNP Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
TCN2	chr 22	31004187	31004188	rs7289549	+	G	C/G	intron,near-gen	11	1000GENOMES,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,PERLEGEN,SC_SNP,SNP500CANCER,SSMP	2	0.266392
TCN2	chr 22	31011279	31011280	rs7290898	+	A	A/C/T	intron	14	1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KR	2	0.860245
TCN2	chr 22	31009751	31009752	rs73396379	+	T	C/T	intron	8	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.174371
TCN2	chr 22	31014859	31014860	rs73396395	+	G	A/G	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.168421
TCN2	chr 22	31019632	31019633	rs73398305	+	G	A/G	intron	8	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.170408
TCN2	chr 22	31010239	31010240	rs73881489	+	G	A/G	intron	5	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA-UK,TISHKOFF,	2	0.056829
TCN2	chr 22	31007918	31007919	rs740233	+	A	A/G	intron	17	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,	2	0.671484
TCN2	chr 22	31008744	31008745	rs740234	-	A	C/T	intron	15	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJ	2	0.107952
TCN2	chr 22	31013548	31013549	rs740235	+	G	A/G	intron	19	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_	2	0.309202
TCN2	chr 22	31015603	31015604	rs74714074	+	C	C/T	intron	1	1000GENOMES,	2	0.989983
TCN2	chr 22	31010312	31010313	rs75772248	+	C	C/T	intron	5	1000GENOMES,BUSHMAN,ILLUMINA,NHLBI-ESP,TISHKOFF,	2	0.988073
TCN2	chr 22	31011068	31011069	rs757874	+	G	G/T	intron	12	1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,KRIBB_YJKIM,PJP,SSMP,TISHKOFF,TS	2	0.923077
TCN2	chr 22	31008536	31008537	rs76222424	+	C	C/T	intron	3	1000GENOMES,GMI,SSMP,	2	0.984848
TCN2	chr 22	31013920	31013921	rs76348547	+	G	G/T	intron	2	1000GENOMES,TISHKOFF,	2	0.949917
TCN2	chr 22	31013398	31013399	rs76802001	+	G	A/G	coding-synon	4	1000GENOMES,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,	2	0.022846
TCN2	chr 22	31021352	31021353	rs77517564	+	G	A/G	intron	1	1000GENOMES,	2	0.014233
TCN2	chr 22	31021609	31021610	rs79071604	+	C	A/C	intron	6	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF,	2	0.171782
TCN2	chr 22	31003103	31003104	rs79083159	+	C	C/T	near-gene-5,unt	2	1000GENOMES,ILLUMINA,	2	0.989547
TCN2	chr 22	31016671	31016672	rs79657845	+	A	A/G	intron	2	1000GENOMES,TISHKOFF,	2	0.985627
TCN2	chr 22	31016985	31016986	rs79710322	+	T	G/T	intron	5	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,GMI,TISHKOFF,	2	0.027956
TCN2	chr 22	31008792	31008793	rs79711084	+	G	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.020642
TCN2	chr 22	31020068	31020069	rs79864370	+	T	A/T	intron	3	1000GENOMES,ENSEMBL,GMI,	2	0.224312
TCN2	chr 22	31018071	31018072	rs8141515	+	T	C/T	intron	10	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.143296
TCN2	chr 22	31006859	31006860	rs9606756	+	A	A/G	missense	20	1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,HGSV,ILLUM	2	0.884863
TCN2	chr 22	31016644	31016645	rs9606757	+	A	A/G	intron	5	1000GENOMES,GMI,SC_SNP,SSMP,TISHKOFF,	2	0.971854
TCN2	chr 22	31004625	31004626	rs9609017	+	G	C/G	intron,near-gen	17	1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JC	2	0.547814
TCN2	chr 22	31016081	31016082	rs9609019	+	G	A/G	intron	11	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA-UK,PJP,SC_SNP,SSMP,TISHKOFF,	2	0.082455
TCN2	chr 22	31007291	31007292	rs9619126	+	A	A/G	intron	6	1000GENOMES,HGSV,ILLUMINA,PJP,SC_SNP,TISHKOFF,	2	0.984484
TCN2	chr 22	31004126	31004127	rs9621047	+	G	A/G	intron,near-gen	19	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUM	2	0.320535
TCN2	chr 22	31013418	31013419	rs9621049	+	C	C/T	missense	16	1000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,KR	2	0.882287
TYMS	chr 18	662102	662103	rs1001761	-	G	C/T	intron	24	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,H	2	0.389649
TYMS	chr 18	660382	660383	rs1004474	+	A	A/G	intron	22	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENO	2	0.4673
TYMS	chr 18	668375	668376	rs1051527	-	C	C/G	intron	20	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KRIBB	2	0.515961
TYMS	chr 18	672835	672836	rs1059393	-	A	C/T	intron,untransl	19	1000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,HUMANGEN	2	0.11266
TYMS	chr 18	672791	672792	rs1059394	-	C	A/G	intron,untransl	22	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLU	2	0.484471
TYMS	chr 18	658534	658540	rs111834869	+	AG	-/AGT	intron,near-gen	4	1000GENOMES,BUSHMAN,GMI,LUNTER,	2	0.297248
TYMS	chr 18	670036	670038	rs112444526	+	AG	-/AG	intron	3	1000GENOMES,BUSHMAN,LUNTER,	2	0.022936
TYMS	chr 18	662077	662078	rs113333865	+	C	C/T	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.975275
TYMS	chr 18	666301	666302	rs113382317	+	T	G/T	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.023853
TYMS	chr 18	662214	662215	rs11540152	+	T	C/T	missense	3	CGAP-GAI,ILLUMINA,KRIBB_YJKIM,	2	0.087209
TYMS	chr 18	666321	666322	rs115838176	+	C	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.966899
TYMS	chr 18	658972	658973	rs115954259	+	G	G/T	intron,near-gen	1	1000GENOMES,	2	0.985627
TYMS	chr 18	672203	672204	rs116368112	+	T	G/T	intron,untransl	1	1000GENOMES,	2	0.010017
TYMS	chr 18	670617	670618	rs116411920	+	C	C/T	intron,untransl	2	1000GENOMES,ILLUMINA,	2	0.974739
TYMS	chr 18	658917	658918	rs116569088	+	A	A/G	intron,near-gen	2	1000GENOMES,TISHKOFF,	2	0.979965
TYMS	chr 18	668551	668552	rs116736801	+	G	C/G	intron	1	1000GENOMES,	2	0.010889
TYMS	chr 18	667690	667691	rs118049362	+	A	A/T	intron	2	1000GENOMES,GMI,	2	0.988251
TYMS	chr 18	662134	662135	rs11873890	+	A	A/G	intron	10	1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,	2	0.971741
TYMS	chr 18	671833	671834	rs12958458	+	C	C/T	intron,untransl	8	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP,SSMP,TISHKOFF,	2	0.907221
TYMS	chr 18	672034	672035	rs12962403	+	C	C/T	intron,untransl	9	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF,	2	0.90772
TYMS	chr 18	668238	668238	rs146056628	+	-	-/TCT	intron	3	1000GENOMES,BILGI_BIOE,LUNTER,	2	0.928375
TYMS	chr 18	669292	669296	rs147919381	+	TT	-/TTG	intron	5	1000GENOMES,BL,GMI,LUNTER,SSMP,	2	0.47888
TYMS	chr 18	664688	664689	rs150189430	+	C	C/T	intron	3	1000GENOMES,GMI,SSMP,	2	0.484389
TYMS	chr 18	673443	673449	rs151264360	+	TT	-/TTA	intron,cds-inde	3	1000GENOMES,GMI,LUNTER,	2	0.478421
TYMS	chr 18	668257	668258	rs15872	+	C	C/T	intron	20	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK	2	0.485932
TYMS	chr 18	673443	673444	rs16430	-	T	-/CTT	intron,cds-inde	4	DEVINE_LAB,GMI,MARSHFIELD,PJP,	2	0.427719
TYMS	chr 18	667016	667017	rs1672569	-	A	A/T	intron	2	1000GENOMES,SC_JCM,	2	0.368687
TYMS	chr 18	668464	668465	rs16948305	+	C	C/T	intron	11	1000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.90797
TYMS	chr 18	669683	669684	rs16948322	+	T	C/T	intron	16	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.481338
TYMS	chr 18	673210	673211	rs16948409	+	G	G/T	intron,untransl	5	1000GENOMES,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.982759
TYMS	chr 18	673394	673395	rs16948421	+	G	A/G	intron,untransl	7	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,TISHKOFF,	2	0.052015
TYMS	chr 18	667076	667077	rs182891213	+	A	A/T	intron	3	1000GENOMES,GMI,SSMP,	2	0.836547
TYMS	chr 18	657656	657657	rs183205964	+	G	C/G	intron,untransl	1	1000GENOMES,	2	0.010101
TYMS	chr 18	665833	665834	rs183742746	+	T	A/T	intron	2	1000GENOMES,GMI,	2	0.016988
TYMS	chr 18	666135	666136	rs183940845	+	A	A/T	intron	1	1000GENOMES,	2	0.968779
TYMS	chr 18	664367	664368	rs184086822	+	A	A/G	intron	3	1000GENOMES,GMI,SSMP,	2	0.708907
TYMS	chr 18	667291	667292	rs185823373	+	A	A/T	intron	1	1000GENOMES,	2	0.812672
TYMS	chr 18	662662	662663	rs189809692	+	C	C/G	intron	1	1000GENOMES,	2	0.978421
TYMS	chr 18	658589	658590	rs192603316	+	C	C/T	intron,near-gen	1	1000GENOMES,	2	0.982553
TYMS	chr 18	665794	665795	rs193023028	+	G	A/G	intron	1	1000GENOMES,	2	0.028007
TYMS	chr 18	661811	661812	rs1970763	+	A	A/G	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.496577
TYMS	chr 18	661755	661756	rs2015944	-	T	A/G	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JC	2	0.415602
TYMS	chr 18	673442	673448	rs202243265	+	TT	-/TTT	intron,cds-inde	1	1000GENOMES,	2	0.429752
TYMS	chr 18	661916	661917	rs2124616	-	G	C/T	intron	9	1000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL,	2	0.927264
TYMS	chr 18	661004	661005	rs2244500	-	A	C/T	intron	23	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,	2	0.628794
TYMS	chr 18	659870	659871	rs2606240	-	A	C/T	intron,near-gen	18	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,	2	0.60337
TYMS	chr 18	667769	667770	rs2606242	+	C	C/G	intron	12	1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SC_JCM,SSMP,TISHKOF	2	0.562929
TYMS	chr 18	672042	672043	rs2606245	+	A	A/G	intron,untransl	16	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,S	2	0.424726
TYMS	chr 18	662369	662370	rs2612095	+	T	C/T	intron	25	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMAN	2	0.630889
TYMS	chr 18	666600	666601	rs2612096	+	A	A/G	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.398006
TYMS	chr 18	670994	670995	rs2612098	+	A	A/C	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	3	0.400249
TYMS	chr 18	671726	671727	rs2612099	+	G	A/G	intron,untransl	14	1000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,SC_JCM,SSMP,T	2	0.450493
TYMS	chr 18	672362	672363	rs2612100	+	G	A/G	intron,untransl	23	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMAN	2	0.538982
TYMS	chr 18	673085	673086	rs2790	+	A	A/G/T	intron,untransl	19	1000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA	3	0.717496
TYMS	chr 18	666370	666371	rs2847149	+	G	A/G	intron	22	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.633372
TYMS	chr 18	668299	668300	rs2847150	+	G	A/G	intron	18	1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,	2	0.512598
TYMS	chr 18	671166	671167	rs2847151	+	G	A/G	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-U	2	0.482412
TYMS	chr 18	661646	661647	rs2847153	+	G	A/G	intron	18	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA	2	0.29272
TYMS	chr 18	670540	670541	rs2847609	+	A	A/G	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP	2	0.518375
TYMS	chr 18	666980	666981	rs2847610	+	A	A/T	intron	2	1000GENOMES,SC_JCM,	2	0.743802
TYMS	chr 18	658429	658430	rs2847612	+	G	C/G	intron,near-gen	10	1000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,	2	0.292449
TYMS	chr 18	659957	659958	rs2847613	+	T	C/T	intron,near-gen	15	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI	2	0.43947
TYMS	chr 18	660646	660647	rs28503425	+	C	A/C	intron	11	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHK	2	0.090037
TYMS	chr 18	667897	667898	rs2853524	+	T	A/C/G	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.483977
TYMS	chr 18	667949	667950	rs2853525	+	T	A/C/T	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	3	0.00655
TYMS	chr 18	668035	668036	rs2853526	+	A	A/T	intron	15	1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,ILLUMINA-UK,LEE,SC_JCM,SNP500CANCER,SSAHASNP	2	0.518387
TYMS	chr 18	668037	668038	rs2853527	+	A	A/T	intron	16	1000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,LEE,SC_JCM,SNP5	2	0.518387
TYMS	chr 18	668649	668650	rs2853528	+	C	C/T	intron	20	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,	2	0.48354
TYMS	chr 18	669532	669533	rs2853529	+	C	C/T	intron	12	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF	2	0.525858
TYMS	chr 18	670413	670414	rs2853532	+	C	C/T	intron,untransl	21	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JC	2	0.490997
TYMS	chr 18	658063	658064	rs2853533	+	G	C/G	intron,missense	15	1000GENOMES,BGI,BUSHMAN,CGAP-GAI,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,MGC_GENOME_DIFF,NHLBI-ESP,SC_J	2	0.316397
TYMS	chr 18	671025	671026	rs2853534	+	C	C/T	intron,untransl	18	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.518028
TYMS	chr 18	671056	671057	rs2853535	+	C	C/T	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.517115
TYMS	chr 18	671519	671520	rs2853536	+	C	C/T	intron,untransl	18	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,P	2	0.515632
TYMS	chr 18	671647	671648	rs2853537	+	A	A/T	intron,untransl	15	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,	2	0.507916
TYMS	chr 18	672287	672288	rs2853538	+	C	C/T	intron,untransl	16	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.515718
TYMS	chr 18	659828	659829	rs2853539	+	A	A/G	intron,near-gen	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,E	2	0.400182
TYMS	chr 18	657684	657685	rs2853542	+	G	C/G	intron,untransl	5	1000GENOMES,CGAP-GAI,COMPLETE_GENOMICS,SC_JCM,SSMP,	2	0.38578
TYMS	chr 18	666506	666507	rs2853543	+	C	C/G	intron	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.488242
TYMS	chr 18	671104	671105	rs2853740	+	T	C/T	intron,untransl	19	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM	2	0.435435
TYMS	chr 18	658169	658170	rs28602966	+	G	G/T	intron,nonsense	6	1000GENOMES,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SSAHASNP,SSMP,	2	0.983012
TYMS	chr 18	662521	662522	rs2925470	-	T	A/T	intron	3	1000GENOMES,GMI,SC_JCM,	2	0.650138
TYMS	chr 18	666272	666273	rs34007153	+	C	A/C	intron	3	1000GENOMES,ILLUMINA,SNP500CANCER,	2	0.022047
TYMS	chr 18	673450	673451	rs34489327	+	T	-/TTA	intron,cds-inde	1	SNP500CANCER,	2	0.470052
TYMS	chr 18	666264	666265	rs34502878	+	C	C/T	intron	5	1000GENOMES,BGI,GMI,SNP500CANCER,SSMP,	2	0.933872
TYMS	chr 18	657645	657730	rs34743033	+	CC	lengt	unknown	1	SNP500CANCER,	3	0.336816
TYMS	chr 18	669295	669295	rs34795969	+	-	-/ATT	intron	1	SNP500CANCER,	2	0.520154
TYMS	chr 18	670471	670472	rs35143366	+	C	C/T	intron,untransl	2	1000GENOMES,SNP500CANCER,	2	0.986825
TYMS	chr 18	669186	669187	rs35710611	+	C	C/T	intron	4	1000GENOMES,ILLUMINA,NHLBI-ESP,SNP500CANCER,	2	0.988754
TYMS	chr 18	666532	666533	rs36080427	+	G	G/T	intron	2	1000GENOMES,SNP500CANCER,	2	0.986841
TYMS	chr 18	662246	662247	rs3786362	-	A	C/T	coding-synon	11	1000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,SEATTLESEQ,SSMP,	2	0.028828
TYMS	chr 18	670887	670888	rs3826626	-	T	A/G	intron,untransl	12	1000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,	2	0.913225
TYMS	chr 18	658422	658423	rs3891167	+	A	A/G	intron,near-gen	17	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,DEVINE_LAB,ENSEMBL,GMI,ILLUMINA-UK,PJP,SC_JCM,SEQUENOM,	2	0.78503
TYMS	chr 18	657645	657701	rs45445694	+	CC	lengt	unknown	1	PHARMGKB_PAAR-SJCRH,	6	0.428094
TYMS	chr 18	659176	659177	rs4987088	+	G	A/G	intron,near-gen	3	1000GENOMES,PERLEGEN,SNP500CANCER,	2	0.011754
TYMS	chr 18	659148	659149	rs4987089	+	A	A/G	intron,near-gen	3	1000GENOMES,PERLEGEN,SNP500CANCER,	2	0.98898
TYMS	chr 18	659235	659236	rs502396	+	C	C/T	intron,near-gen	18	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,	2	0.627612
TYMS	chr 18	671049	671050	rs523998	-	T	A/G	intron,untransl	5	1000GENOMES,ABI,BCM-HGSC-SUB,BL,SC_JCM,	2	0.964915
TYMS	chr 18	666099	666100	rs55688320	+	A	A/C	intron	7	BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.25
TYMS	chr 18	666073	666074	rs55742849	+	A	A/G	intron	8	1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,	2	0.883349
TYMS	chr 18	665840	665841	rs55867764	+	G	A/G	intron	4	1000GENOMES,GMI,HGSV,SSMP,	2	0.01607
TYMS	chr 18	666031	666032	rs55897736	+	C	C/T	intron	6	1000GENOMES,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.931319
TYMS	chr 18	666096	666097	rs55906508	+	C	C/G	intron	7	BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.25
TYMS	chr 18	666036	666037	rs56380264	+	A	A/G	intron	5	1000GENOMES,GMI,HGSV,HUMANGENOME_JCVI,SSMP,	2	0.93945
TYMS	chr 18	665842	665843	rs56405278	+	T	C/T	intron	4	1000GENOMES,GMI,HGSV,SSMP,	2	0.011478
TYMS	chr 18	671976	671977	rs60279109	+	A	A/G	intron,untransl	11	1000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SSMP,TISHKOFF,	2	0.517399
TYMS	chr 18	666932	666933	rs62090121	+	T	A/T	intron	4	1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,	2	0.099083
TYMS	chr 18	666938	666939	rs62090122	+	A	A/T	intron	5	1000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,SSMP,	2	0.674312
TYMS	chr 18	666962	666963	rs62090123	+	A	A/T	intron	5	1000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,SSMP,	2	0.765138
TYMS	chr 18	660441	660442	rs66567989	+	A	-/A	intron	8	1000GENOMES,BILGI_BIOE,DEVINE_LAB,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,	2	0.072477
TYMS	chr 18	673015	673016	rs699517	+	C	C/T	untranslated-3	24	1000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILL	2	0.520312
TYMS	chr 18	669760	669764	rs72086130	+	CT	-/CTC	intron	6	1000GENOMES,BILGI_BIOE,BUSHMAN,DEVINE_LAB,LUNTER,SSMP,	2	0.089908
TYMS	chr 18	658331	658332	rs72634355	+	C	C/T	intron,untransl	7	1000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.712385
TYMS	chr 18	668519	668520	rs72867160	+	T	G/T	intron	7	1000GENOMES,BL,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.072936
TYMS	chr 18	658000	658001	rs73366471	+	G	A/G	intron,nonsense	7	1000GENOMES,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.019266
TYMS	chr 18	660155	660156	rs73366479	+	A	A/G	intron,near-gen	3	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,	2	0.983945
TYMS	chr 18	658416	658417	rs75047328	+	G	G/T	intron,near-gen	4	1000GENOMES,GMI,SSMP,TISHKOFF,	2	0.989556
TYMS	chr 18	660366	660367	rs75075985	+	T	A/T	intron	4	1000GENOMES,BGI,GMI,SSMP,	2	0.072237
TYMS	chr 18	658034	658035	rs77400748	+	A	A/G	coding-synon,in	4	1000GENOMES,GMI,NHLBI-ESP,SSMP,	2	0.977961
TYMS	chr 18	669839	669840	rs77404636	+	T	C/T	intron	4	1000GENOMES,BGI,GMI,SSMP,	2	0.073977
TYMS	chr 18	667820	667821	rs78835614	+	C	C/T	intron	5	1000GENOMES,BGI,GMI,ILLUMINA,SSMP,	2	0.926458
TYMS	chr 18	664751	664752	rs79833699	+	C	C/T	intron	4	1000GENOMES,ENSEMBL,GMI,SSMP,	2	0.637156
TYMS	chr 18	666624	666625	rs8088781	+	C	C/T	intron	7	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SNP500CANCER,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.910945

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