Folate SNP Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ABCB1	chr 7	87302184	87302185	rs111741511	+	A	A/G	intron	4	1000GENOMES,BUSHMAN,SSMP,TISHKOFF,	2	0.971547
ABCB1	chr 7	87201751	87201752	rs112157548	+	T	C/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.011009
ABCB1	chr 7	87217059	87217060	rs112174094	+	A	A/G	intron	5	1000GENOMES,COMPLETE_GENOMICS,GMI,SSMP,TISHKOFF,	2	0.948671
ABCB1	chr 7	87205478	87205478	rs112193986	+	-	-/A	intron	2	1000GENOMES,BUSHMAN,	2	0.375229
ABCB1	chr 7	87291587	87291588	rs112421854	+	C	C/T	intron	3	1000GENOMES,COMPLETE_GENOMICS,GMI,	2	0.970669
ABCB1	chr 7	87205817	87205818	rs112524891	+	A	A/G	intron	2	1000GENOMES,BUSHMAN,	2	0.988991
ABCB1	chr 7	87179600	87179601	rs1128503	-	A	C/T	coding-synon	38	1000GENOMES,BCM-HGSC-SUB,BGI,BL,BUSHMAN,CCHMC-CAE-PGCORE,CGM_KYOTO,CLINSEQ_SNP,CNG,COMPLETE_GENOMICS	2	0.615974
ABCB1	chr 7	87294992	87294993	rs112961396	+	C	C/G	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.987615
ABCB1	chr 7	87274521	87274522	rs113000164	+	T	C/T	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.024771
ABCB1	chr 7	87137311	87137312	rs11304553	+	G	-/G	intron	13	1000GENOMES,ABI,BGI,BILGI_BIOE,BL,DEVINE_LAB,EGP_SNPS,GMI,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,	2	0.218085
ABCB1	chr 7	87331187	87331188	rs113152235	+	G	A/G	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.026618
ABCB1	chr 7	87252714	87252715	rs113629994	+	A	A/G	intron	3	1000GENOMES,COMPLETE_GENOMICS,ILLUMINA,	2	0.98945
ABCB1	chr 7	87189804	87189805	rs113679151	+	A	A/G	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.987156
ABCB1	chr 7	87177153	87177154	rs113686230	+	G	A/G	intron	3	1000GENOMES,COMPLETE_GENOMICS,SSMP,	2	0.11422
ABCB1	chr 7	87334633	87334634	rs113686434	+	T	C/T	intron	5	1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF,	2	0.152363
ABCB1	chr 7	87222277	87222278	rs113860603	+	C	C/G	intron	5	1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF,	2	0.955963
ABCB1	chr 7	87234742	87234743	rs113886762	+	C	C/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.976605
ABCB1	chr 7	87237402	87237402	rs11395081	+	-	-/T	intron	5	1000GENOMES,DEVINE_LAB,EGP_SNPS,LUNTER,SSMP,	2	0.944632
ABCB1	chr 7	87185697	87185698	rs114106519	+	T	C/T	intron	2	1000GENOMES,ILLUMINA,	2	0.014901
ABCB1	chr 7	87337511	87337512	rs114653646	+	C	A/C	intron	2	1000GENOMES,ILLUMINA,	2	0.021109
ABCB1	chr 7	87240233	87240234	rs114847793	+	C	C/T	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.969785
ABCB1	chr 7	87273991	87273992	rs115229840	+	A	A/G	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.972268
ABCB1	chr 7	87322700	87322701	rs115281635	+	T	A/T	intron	2	1000GENOMES,TISHKOFF,	2	0.013502
ABCB1	chr 7	87176429	87176430	rs115780656	+	C	C/T	intron	1	1000GENOMES,	2	0.980132
ABCB1	chr 7	87290864	87290865	rs115971798	+	T	C/T	intron	4	1000GENOMES,GMI,SSMP,TISHKOFF,	2	0.125698
ABCB1	chr 7	87283955	87283956	rs116868231	+	G	G/T	intron	2	1000GENOMES,GMI,	2	0.975631
ABCB1	chr 7	87201068	87201069	rs116875582	+	C	C/T	intron	2	1000GENOMES,ILLUMINA,	2	0.986945
ABCB1	chr 7	87251180	87251181	rs116888417	+	C	A/C	intron	2	1000GENOMES,SSMP,	2	0.027415
ABCB1	chr 7	87211159	87211160	rs116982650	+	C	C/T	intron	1	1000GENOMES,	2	0.986075
ABCB1	chr 7	87315311	87315312	rs117017813	+	C	A/C	intron	3	1000GENOMES,GMI,SSMP,	2	0.022628
ABCB1	chr 7	87292682	87292683	rs117102999	+	C	C/T	intron	2	1000GENOMES,SSMP,	2	0.971715
ABCB1	chr 7	87224030	87224031	rs117142455	+	G	G/T	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.972585
ABCB1	chr 7	87214251	87214252	rs117175889	+	A	A/T	intron	1	1000GENOMES,	2	0.987815
ABCB1	chr 7	87223698	87223699	rs117448677	+	A	A/G	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.972585
ABCB1	chr 7	87298738	87298739	rs117457838	+	T	C/T	intron	3	1000GENOMES,GMI,SSMP,	2	0.020017
ABCB1	chr 7	87303452	87303453	rs117546457	+	C	C/T	intron	3	1000GENOMES,GMI,SSMP,	2	0.986075
ABCB1	chr 7	87253737	87253738	rs117606166	+	A	A/T	intron	2	1000GENOMES,SSMP,	2	0.971279
ABCB1	chr 7	87163015	87163016	rs11760837	+	T	C/T	intron	13	1000GENOMES,ABI,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,GOLD,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SSMP,	2	0.146923
ABCB1	chr 7	87217214	87217215	rs11763872	+	T	C/T	intron	11	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,ILLUMINA,KRIBB_YJKIM,TISH	2	0.440327
ABCB1	chr 7	87222872	87222873	rs117685365	+	T	C/T	intron	3	1000GENOMES,GMI,ILLUMINA,	2	0.015231
ABCB1	chr 7	87295275	87295276	rs117714927	+	C	C/T	intron	3	1000GENOMES,GMI,SSMP,	2	0.979983
ABCB1	chr 7	87186017	87186018	rs11772987	+	C	C/G	intron	9	1000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ILLUMINA,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.871736
ABCB1	chr 7	87212403	87212404	rs117773249	+	G	A/G	intron	1	1000GENOMES,	2	0.017406
ABCB1	chr 7	87164348	87164349	rs117937072	+	A	A/C	intron	1	1000GENOMES,	2	0.983029
ABCB1	chr 7	87180504	87180505	rs118036437	+	T	A/T	intron	2	1000GENOMES,GMI,	2	0.010444
ABCB1	chr 7	87276533	87276534	rs118038149	+	C	C/G	intron	3	1000GENOMES,SSMP,TISHKOFF,	2	0.97215
ABCB1	chr 7	87282128	87282129	rs118076780	+	T	C/T	intron	2	1000GENOMES,SSMP,	2	0.028285
ABCB1	chr 7	87133932	87133933	rs1186744	+	A	A/G	intron	5	1000GENOMES,EGP_SNPS,KWOK,SSMP,TISHKOFF,	2	0.976655
ABCB1	chr 7	87133946	87133947	rs1186745	+	C	A/C	intron	15	1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,HUMANGENOME_JCVI,KWOK,PJP,RIKENSN	2	0.107445
ABCB1	chr 7	87133992	87133993	rs1186746	+	T	C/T	intron	7	1000GENOMES,EGP_SNPS,HGSV,KWOK,RIKENSNPRC,SSMP,TISHKOFF,	2	0.168201
ABCB1	chr 7	87164228	87164229	rs11972405	+	T	C/T	intron	6	1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,GOLD,TISHKOFF,	2	0.132447
ABCB1	chr 7	87285116	87285117	rs11973812	+	C	C/G	intron	7	1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,KRIBB_YJKIM,SSMP,	2	0.940058
ABCB1	chr 7	87256936	87256937	rs11975403	+	G	A/G	intron,near-gen	8	1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,HGSV,ILLUMINA,KRIBB_YJKIM,TISHKOFF,	2	0.054401
ABCB1	chr 7	87192730	87192731	rs11975994	+	G	A/G	intron	17	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_	2	0.613522
ABCB1	chr 7	87285574	87285575	rs11977492	+	T	A/T	intron	4	1000GENOMES,ABI,CSHL-HAPMAP,GMI,	2	0.059669
ABCB1	chr 7	87152622	87152623	rs11979702	+	T	A/T	intron	8	1000GENOMES,ABI,COMPLETE_GENOMICS,CSHL-HAPMAP,GOLD,ILLUMINA,SSMP,TISHKOFF,	2	0.121705
ABCB1	chr 7	87161519	87161520	rs11983225	+	T	C/T	intron	10	1000GENOMES,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,GOLD,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.145681
ABCB1	chr 7	87323733	87323734	rs11983274	+	A	A/G	intron	3	1000GENOMES,ABI,CSHL-HAPMAP,	2	0.974853
ABCB1	chr 7	87197593	87197594	rs1202165	-	G	C/T	intron	10	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,KWOK,TISHKOFF,	2	0.57548
ABCB1	chr 7	87197350	87197351	rs1202166	-	A	C/T	intron	14	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEMBL,GMI,K	2	0.633161
ABCB1	chr 7	87197058	87197059	rs1202167	-	C	A/G	intron	18	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,ILLUMINA,	3	0.427373
ABCB1	chr 7	87195961	87195962	rs1202168	-	G	C/T	intron	29	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,CSHL-HA	2	0.574856
ABCB1	chr 7	87195849	87195850	rs1202169	-	T	A/G	intron	27	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,CSHL-HAPMA	2	0.57589
ABCB1	chr 7	87195105	87195106	rs1202170	-	C	A/G	intron	24	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSE	2	0.55385
ABCB1	chr 7	87211044	87211045	rs1202171	-	T	A/T	intron	25	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,G	2	0.243439
ABCB1	chr 7	87210973	87210974	rs1202172	-	C	G/T	intron	25	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,G	2	0.282143
ABCB1	chr 7	87210258	87210259	rs1202173	-	A	C/T	intron	20	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.758322
ABCB1	chr 7	87209371	87209372	rs1202174	-	T	A/G	intron	20	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,E	2	0.291348
ABCB1	chr 7	87209149	87209150	rs1202175	-	G	C/T	intron	21	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,	2	0.245265
ABCB1	chr 7	87208986	87208987	rs1202176	-	G	C/T	intron	16	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME	2	0.243033
ABCB1	chr 7	87207913	87207914	rs1202177	-	C	A/G	intron	19	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,	2	0.758087
ABCB1	chr 7	87207127	87207128	rs1202178	-	G	C/T	intron	16	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,GMI,HGSV,HUMANGENOME_JCVI,KWOK,PJP,SC_	2	0.457875
ABCB1	chr 7	87204278	87204279	rs1202179	-	C	A/G	intron	23	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM	2	0.700972
ABCB1	chr 7	87203839	87203840	rs1202180	-	C	A/G	intron	22	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HG	4	0.734694
ABCB1	chr 7	87216149	87216150	rs1202181	-	G	C/T	intron	26	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,EGP_SNPS,ENSEM	2	0.244439
ABCB1	chr 7	87215303	87215304	rs1202182	-	G	C/T	intron	25	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,	2	0.239116
ABCB1	chr 7	87213900	87213901	rs1202184	-	C	A/G	intron	19	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,ILL	3	0.435307
ABCB1	chr 7	87213383	87213384	rs1202185	-	C	A/G	intron	20	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLU	2	0.756336
ABCB1	chr 7	87213257	87213258	rs1202186	-	C	A/G	intron	22	1000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLU	2	0.752779
ABCB1	chr 7	87208224	87208225	rs1209054	-	A	C/T	intron	13	1000GENOMES,ABI,BCMHGSC_JDW,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,KWOK,PJP,SSAHASNP,SSMP,TISHKOFF,WI	2	0.532236
ABCB1	chr 7	87208254	87208255	rs1211151	-	T	A/G	intron	15	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,KWOK,PJP,SSAHASNP,	2	0.385283
ABCB1	chr 7	87215113	87215114	rs1211152	-	A	G/T	intron	28	1000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMIC	2	0.968934
ABCB1	chr 7	87202401	87202402	rs1211433	-	G	C/T	intron	16	1000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,KWOK,PJP,SC_JCM,SS	2	0.360439
ABCB1	chr 7	87170016	87170017	rs12154941	+	C	C/T	intron	14	1000GENOMES,ABI,BL,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,GOLD,HUMANGENOME_JCVI,PJP,SC_SNP,SSAHASNP,	2	0.719276
ABCB1	chr 7	87201379	87201380	rs12334183	+	T	C/T	intron	9	1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SC_SNP,SSMP,TISHKOFF,	2	0.223558
ABCB1	chr 7	87220333	87220334	rs12535512	+	T	C/T	intron	16	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOM	2	0.333415
ABCB1	chr 7	87243357	87243358	rs12536690	+	A	A/G	intron	7	1000GENOMES,ABI,CSHL-HAPMAP,GMI,ILLUMINA-UK,PERLEGEN,SSMP,	2	0.926166
ABCB1	chr 7	87200638	87200639	rs12539098	+	T	C/T	intron	17	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HU	2	0.436856
ABCB1	chr 7	87279855	87279856	rs12539395	+	C	C/T	intron	11	1000GENOMES,ABI,BUSHMAN,CSHL-HAPMAP,EGP_SNPS,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,SSMP,TISHKOFF,	2	0.81607
ABCB1	chr 7	87302834	87302835	rs12540931	+	T	C/T	intron	7	1000GENOMES,BUSHMAN,CSHL-HAPMAP,GMI,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.09877
ABCB1	chr 7	87167003	87167004	rs12668877	+	C	C/T	intron	9	1000GENOMES,BUSHMAN,CSHL-HAPMAP,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,TISHKOFF,	2	0.892594
ABCB1	chr 7	87234723	87234724	rs12668917	+	A	A/G	intron	5	1000GENOMES,ABI,CSHL-HAPMAP,GMI,SSMP,	2	0.982553
ABCB1	chr 7	87326124	87326125	rs12670317	+	T	G/T	intron	10	1000GENOMES,ABI,AFFY,CSHL-HAPMAP,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,	2	0.027409
ABCB1	chr 7	87155358	87155359	rs12673269	+	T	A/T	intron	8	1000GENOMES,ABI,AFFY,CSHL-HAPMAP,GMI,ILLUMINA,KRIBB_YJKIM,SSMP,	2	0.023081
ABCB1	chr 7	87175625	87175626	rs12704363	-	C	A/G	intron	13	1000GENOMES,ABI,BL,BUSHMAN,CGM_KYOTO,CNG,COMPLETE_GENOMICS,EGP_SNPS,GMI,GOLD,SSAHASNP,SSMP,TISHKOFF,	2	0.300971
ABCB1	chr 7	87181174	87181175	rs12704364	+	C	C/T	intron	16	1000GENOMES,ABI,BGI,BUSHMAN,COMPLETE_GENOMICS,EGP_SNPS,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-U	2	0.5467
ABCB1	chr 7	87169701	87169702	rs12720066	-	A	G/T	intron	11	1000GENOMES,BCMHGSC_JDW,COMPLETE_GENOMICS,EGP_SNPS,ENSEMBL,GMI,GOLD,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SS	2	0.029545
ABCB1	chr 7	87169355	87169356	rs12720067	-	C	A/G	intron	8	1000GENOMES,AFFY,GOLD,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,	2	0.077582
ABCB1	chr 7	87231852	87231853	rs12720464	-	C	A/G	intron	10	1000GENOMES,AFFY,EGP_SNPS,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,WRAYLAB,	2	0.080428
ABCB1	chr 7	87206614	87206615	rs13226726	+	C	C/T	intron	5	1000GENOMES,ABI,PERLEGEN,PJP,SSAHASNP,	2	0.964883

‹ Prev

252

Next ›