Folate Intron Data


Gene SymbolChromosomeStartEndrs IDStrandNCBI refObservedFunctionSubmitter CountSubmitterFrequency CountAllele Frequency
TYMS chr 18662102662103rs1001761-GC/Tintron241000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,H20.389649
TYMS chr 18660382660383rs1004474+AA/Gintron221000GENOMES,ABI,AFFY,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENO20.4673
TYMS chr 18668375668376rs1051527-CC/Gintron201000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KRIBB20.515961
TYMS chr 18672835672836rs1059393-AC/Tintron,untransl191000GENOMES,ABI,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,HGSV,HUMANGEN20.11266
TYMS chr 18672791672792rs1059394-CA/Gintron,untransl221000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLU20.484471
TYMS chr 18658534658540rs111834869+AG-/AGTintron,near-gen41000GENOMES,BUSHMAN,GMI,LUNTER,20.297248
TYMS chr 18670036670038rs112444526+AG-/AGintron31000GENOMES,BUSHMAN,LUNTER,20.022936
TYMS chr 18662077662078rs113333865+CC/Tintron31000GENOMES,BUSHMAN,TISHKOFF,20.975275
TYMS chr 18666301666302rs113382317+TG/Tintron31000GENOMES,BUSHMAN,TISHKOFF,20.023853
TYMS chr 18666321666322rs115838176+CC/Tintron21000GENOMES,TISHKOFF,20.966899
TYMS chr 18658972658973rs115954259+GG/Tintron,near-gen11000GENOMES,20.985627
TYMS chr 18672203672204rs116368112+TG/Tintron,untransl11000GENOMES,20.010017
TYMS chr 18670617670618rs116411920+CC/Tintron,untransl21000GENOMES,ILLUMINA,20.974739
TYMS chr 18658917658918rs116569088+AA/Gintron,near-gen21000GENOMES,TISHKOFF,20.979965
TYMS chr 18668551668552rs116736801+GC/Gintron11000GENOMES,20.010889
TYMS chr 18667690667691rs118049362+AA/Tintron21000GENOMES,GMI,20.988251
TYMS chr 18662134662135rs11873890+AA/Gintron101000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,TISHKOFF,20.971741
TYMS chr 18671833671834rs12958458+CC/Tintron,untransl81000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,SSAHASNP,SSMP,TISHKOFF,20.907221
TYMS chr 18672034672035rs12962403+CC/Tintron,untransl91000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,SSAHASNP,SSMP,TISHKOFF,20.90772
TYMS chr 18668238668238rs146056628+--/TCTintron31000GENOMES,BILGI_BIOE,LUNTER,20.928375
TYMS chr 18669292669296rs147919381+TT-/TTGintron51000GENOMES,BL,GMI,LUNTER,SSMP,20.47888
TYMS chr 18664688664689rs150189430+CC/Tintron31000GENOMES,GMI,SSMP,20.484389
TYMS chr 18673443673449rs151264360+TT-/TTAintron,cds-inde31000GENOMES,GMI,LUNTER,20.478421
TYMS chr 18668257668258rs15872+CC/Tintron201000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK20.485932
TYMS chr 18673443673444rs16430-T-/CTTintron,cds-inde4DEVINE_LAB,GMI,MARSHFIELD,PJP,20.427719
TYMS chr 18667016667017rs1672569-AA/Tintron21000GENOMES,SC_JCM,20.368687
TYMS chr 18668464668465rs16948305+CC/Tintron111000GENOMES,ABI,AFFY,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,20.90797
TYMS chr 18669683669684rs16948322+TC/Tintron161000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM20.481338
TYMS chr 18673210673211rs16948409+GG/Tintron,untransl51000GENOMES,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,20.982759
TYMS chr 18673394673395rs16948421+GA/Gintron,untransl71000GENOMES,COMPLETE_GENOMICS,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,TISHKOFF,20.052015
TYMS chr 18667076667077rs182891213+AA/Tintron31000GENOMES,GMI,SSMP,20.836547
TYMS chr 18657656657657rs183205964+GC/Gintron,untransl11000GENOMES,20.010101
TYMS chr 18665833665834rs183742746+TA/Tintron21000GENOMES,GMI,20.016988
TYMS chr 18666135666136rs183940845+AA/Tintron11000GENOMES,20.968779
TYMS chr 18664367664368rs184086822+AA/Gintron31000GENOMES,GMI,SSMP,20.708907
TYMS chr 18667291667292rs185823373+AA/Tintron11000GENOMES,20.812672
TYMS chr 18662662662663rs189809692+CC/Gintron11000GENOMES,20.978421
TYMS chr 18658589658590rs192603316+CC/Tintron,near-gen11000GENOMES,20.982553
TYMS chr 18665794665795rs193023028+GA/Gintron11000GENOMES,20.028007
TYMS chr 18661811661812rs1970763+AA/Gintron191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM20.496577
TYMS chr 18661755661756rs2015944-TA/Gintron191000GENOMES,ABI,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JC20.415602
TYMS chr 18673442673448rs202243265+TT-/TTTintron,cds-inde11000GENOMES,20.429752
TYMS chr 18661916661917rs2124616-GC/Tintron91000GENOMES,ABI,COMPLETE_GENOMICS,ENSEMBL,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,TSC-CSHL,20.927264
TYMS chr 18661004661005rs2244500-AC/Tintron231000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,20.628794
TYMS chr 18659870659871rs2606240-AC/Tintron,near-gen181000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,20.60337
TYMS chr 18667769667770rs2606242+CC/Gintron121000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA-UK,SC_JCM,SSMP,TISHKOF20.562929
TYMS chr 18672042672043rs2606245+AA/Gintron,untransl161000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,S20.424726
TYMS chr 18662369662370rs2612095+TC/Tintron251000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMAN20.630889
TYMS chr 18666600666601rs2612096+AA/Gintron191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM20.398006
TYMS chr 18670994670995rs2612098+AA/Cintron,untransl191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM30.400249
TYMS chr 18671726671727rs2612099+GA/Gintron,untransl141000GENOMES,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,SC_JCM,SSMP,T20.450493
TYMS chr 18672362672363rs2612100+GA/Gintron,untransl231000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMAN20.538982
TYMS chr 18673085673086rs2790+AA/G/Tintron,untransl191000GENOMES,BCMHGSC_JDW,BGI,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA30.717496
TYMS chr 18666370666371rs2847149+GA/Gintron221000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM20.633372
TYMS chr 18668299668300rs2847150+GA/Gintron181000GENOMES,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,KRIBB_YJKIM,20.512598
TYMS chr 18671166671167rs2847151+GA/Gintron,untransl191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,ILLUMINA-U20.482412
TYMS chr 18661646661647rs2847153+GA/Gintron181000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA20.29272
TYMS chr 18670540670541rs2847609+AA/Gintron,untransl191000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA-UK,PJP20.518375
TYMS chr 18666980666981rs2847610+AA/Tintron21000GENOMES,SC_JCM,20.743802
TYMS chr 18658429658430rs2847612+GC/Gintron,near-gen101000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,ILLUMINA-UK,SC_JCM,SSMP,TISHKOFF,TSC-CSHL,20.292449
TYMS chr 18659957659958rs2847613+TC/Tintron,near-gen151000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI20.43947
TYMS chr 18660646660647rs28503425+CA/Cintron111000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,HGSV,HUMANGENOME_JCVI,ILLUMINA,PJP,SSAHASNP,SSMP,TISHK20.090037
TYMS chr 18667897667898rs2853524+TA/C/Gintron191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM20.483977
TYMS chr 18667949667950rs2853525+TA/C/Tintron191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM30.00655
TYMS chr 18668035668036rs2853526+AA/Tintron151000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,ILLUMINA-UK,LEE,SC_JCM,SNP500CANCER,SSAHASNP20.518387
TYMS chr 18668037668038rs2853527+AA/Tintron161000GENOMES,BCMHGSC_JDW,BGI,BL,BUSHMAN,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA-UK,LEE,SC_JCM,SNP520.518387
TYMS chr 18668649668650rs2853528+CC/Tintron201000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,20.48354
TYMS chr 18669532669533rs2853529+CC/Tintron121000GENOMES,ABI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SC_JCM,SSMP,TISHKOFF20.525858
TYMS chr 18670413670414rs2853532+CC/Tintron,untransl211000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JC20.490997
TYMS chr 18658063658064rs2853533+GC/Gintron,missense151000GENOMES,BGI,BUSHMAN,CGAP-GAI,ENSEMBL,EXOME_CHIP,GMI,HGSV,ILLUMINA,MGC_GENOME_DIFF,NHLBI-ESP,SC_J20.316397
TYMS chr 18671025671026rs2853534+CC/Tintron,untransl181000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM20.518028
TYMS chr 18671056671057rs2853535+CC/Tintron,untransl191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM20.517115
TYMS chr 18671519671520rs2853536+CC/Tintron,untransl181000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,P20.515632
TYMS chr 18671647671648rs2853537+AA/Tintron,untransl151000GENOMES,ABI,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA-UK,PERLEGEN,PJP,20.507916
TYMS chr 18672287672288rs2853538+CC/Tintron,untransl161000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM20.515718
TYMS chr 18659828659829rs2853539+AA/Gintron,near-gen201000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,E20.400182
TYMS chr 18657684657685rs2853542+GC/Gintron,untransl51000GENOMES,CGAP-GAI,COMPLETE_GENOMICS,SC_JCM,SSMP,20.38578
TYMS chr 18666506666507rs2853543+CC/Gintron191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOM20.488242
TYMS chr 18671104671105rs2853740+TC/Tintron,untransl191000GENOMES,ABI,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUM20.435435
TYMS chr 18658169658170rs28602966+GG/Tintron,nonsense61000GENOMES,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SSAHASNP,SSMP,20.983012
TYMS chr 18662521662522rs2925470-TA/Tintron31000GENOMES,GMI,SC_JCM,20.650138
TYMS chr 18666272666273rs34007153+CA/Cintron31000GENOMES,ILLUMINA,SNP500CANCER,20.022047
TYMS chr 18673450673451rs34489327+T-/TTAintron,cds-inde1SNP500CANCER,20.470052
TYMS chr 18666264666265rs34502878+CC/Tintron51000GENOMES,BGI,GMI,SNP500CANCER,SSMP,20.933872
TYMS chr 18669295669295rs34795969+--/ATTintron1SNP500CANCER,20.520154
TYMS chr 18670471670472rs35143366+CC/Tintron,untransl21000GENOMES,SNP500CANCER,20.986825
TYMS chr 18669186669187rs35710611+CC/Tintron41000GENOMES,ILLUMINA,NHLBI-ESP,SNP500CANCER,20.988754
TYMS chr 18666532666533rs36080427+GG/Tintron21000GENOMES,SNP500CANCER,20.986841
TYMS chr 18670887670888rs3826626-TA/Gintron,untransl121000GENOMES,BGI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,SSMP,TISHKOFF,20.913225
TYMS chr 18658422658423rs3891167+AA/Gintron,near-gen171000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,DEVINE_LAB,ENSEMBL,GMI,ILLUMINA-UK,PJP,SC_JCM,SEQUENOM,20.78503
TYMS chr 18659176659177rs4987088+GA/Gintron,near-gen31000GENOMES,PERLEGEN,SNP500CANCER,20.011754
TYMS chr 18659148659149rs4987089+AA/Gintron,near-gen31000GENOMES,PERLEGEN,SNP500CANCER,20.98898
TYMS chr 18659235659236rs502396+CC/Tintron,near-gen181000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,20.627612
TYMS chr 18671049671050rs523998-TA/Gintron,untransl51000GENOMES,ABI,BCM-HGSC-SUB,BL,SC_JCM,20.964915
TYMS chr 18666099666100rs55688320+AA/Cintron7BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,20.25
TYMS chr 18666073666074rs55742849+AA/Gintron81000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,20.883349
TYMS chr 18665840665841rs55867764+GA/Gintron41000GENOMES,GMI,HGSV,SSMP,20.01607
TYMS chr 18666031666032rs55897736+CC/Tintron61000GENOMES,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,20.931319
TYMS chr 18666096666097rs55906508+CC/Gintron7BCMHGSC_JDW,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,SSMP,20.25
TYMS chr 18666036666037rs56380264+AA/Gintron51000GENOMES,GMI,HGSV,HUMANGENOME_JCVI,SSMP,20.93945
TYMS chr 18665842665843rs56405278+TC/Tintron41000GENOMES,GMI,HGSV,SSMP,20.011478
TYMS chr 18671976671977rs60279109+AA/Gintron,untransl111000GENOMES,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SSMP,TISHKOFF,20.517399
TYMS chr 18666932666933rs62090121+TA/Tintron41000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,20.099083
TYMS chr 18666938666939rs62090122+AA/Tintron51000GENOMES,BCMHGSC_JDW,ENSEMBL,GMI,SSMP,20.674312
TYMS chr 18666962666963rs62090123+AA/Tintron51000GENOMES,BCMHGSC_JDW,BL,ENSEMBL,SSMP,20.765138
TYMS chr 18660441660442rs66567989+A-/Aintron81000GENOMES,BILGI_BIOE,DEVINE_LAB,HUMANGENOME_JCVI,LUNTER,PJP,SSMP,TISHKOFF,20.072477
TYMS chr 18669760669764rs72086130+CT-/CTCintron61000GENOMES,BILGI_BIOE,BUSHMAN,DEVINE_LAB,LUNTER,SSMP,20.089908
TYMS chr 18658331658332rs72634355+CC/Tintron,untransl71000GENOMES,BGI,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,20.712385
TYMS chr 18668519668520rs72867160+TG/Tintron71000GENOMES,BL,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,20.072936
TYMS chr 18658000658001rs73366471+GA/Gintron,nonsense71000GENOMES,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,SEATTLESEQ,TISHKOFF,20.019266
TYMS chr 18660155660156rs73366479+AA/Gintron,near-gen31000GENOMES,COMPLETE_GENOMICS,ILLUMINA,20.983945
TYMS chr 18658416658417rs75047328+GG/Tintron,near-gen41000GENOMES,GMI,SSMP,TISHKOFF,20.989556
TYMS chr 18660366660367rs75075985+TA/Tintron41000GENOMES,BGI,GMI,SSMP,20.072237
TYMS chr 18669839669840rs77404636+TC/Tintron41000GENOMES,BGI,GMI,SSMP,20.073977
TYMS chr 18667820667821rs78835614+CC/Tintron51000GENOMES,BGI,GMI,ILLUMINA,SSMP,20.926458
TYMS chr 18664751664752rs79833699+CC/Tintron41000GENOMES,ENSEMBL,GMI,SSMP,20.637156
TYMS chr 18666624666625rs8088781+CC/Tintron71000GENOMES,BUSHMAN,COMPLETE_GENOMICS,SNP500CANCER,SSMP,TISHKOFF,WI_SSAHASNP,20.910945