Folate Coding Synonymous Data


Gene SymbolChromosomeStartEndrs IDStrandNCBI refObservedFunctionSubmitter CountSubmitterFrequency CountAllele Frequency
MTHFD1L chr 6151336738151336739rs509474-CC/Gcoding-synon291000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,COMPLET20.572312
MTHFD2L chr 47506561975065620rs200740046-AG/Tcoding-synon2CLINSEQ_SNP,ILLUMINA,20.0595
MTHFR chr 11185489511854896rs2066462-GC/Tcoding-synon151000GENOMES,BUSHMAN,CGM_KYOTO,CLINSEQ_SNP,EGP_SNPS,HGBASE,IMCJ-GDT,MGC_GENOME_DIFF,NHLBI-ESP,PHARMGK20.910388
MTHFR chr 11186305611863057rs2066470-GC/Tcoding-synon231000GENOMES,APPLERA_GI,CGM_KYOTO,CLINSEQ_SNP,EGP_SNPS,GMI,HGBASE,HGSV,ILLUMINA,IMCJ-GDT,KRIBB_YJKIM,20.910381
MTHFR chr 11184805311848054rs34733339-TA/Gcoding-synon,un81000GENOMES,CLINSEQ_SNP,HGSV,ILLUMINA,ILLUMINA-UK,SNP500CANCER,SSMP,TISHKOFF,20.981475
MTHFR chr 11185445611854457rs4846051+GA/Gcoding-synon311000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGM_KYOTO,CLINSEQ_S20.89699
MTR chr 1237058827237058828rs1131449+CC/G/Tcoding-synon281000GENOMES,ABI,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,CSHL-30.455829
MTR chr 1237058747237058748rs12030699+CC/Tcoding-synon91000GENOMES,BGI,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SC_SNP,SEATTLESEQ,SSMP,20.983051
MTR chr 1237058743237058744rs12070777+CA/Ccoding-synon171000GENOMES,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,CORNELL,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,ILLUMINA-UK,N20.341709
MTR chr 1236992530236992531rs201822712+AA/Ccoding-synon1CLINSEQ_SNP,20.9485
MTR chr 1237054568237054569rs2229276+AA/Gcoding-synon201000GENOMES,AFFY,BL,BUSHMAN,CLINSEQ_SNP,CORNELL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,20.657908
MTRR chr 578972827897283rs12347-GC/Tcoding-synon261000GENOMES,ABI,APPLERA_GI,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENO20.782141
MTRR chr 578781917878192rs161870+TC/Tcoding-synon231000GENOMES,ABI,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KWOK,20.216049
MTRR chr 578973187897319rs1802059+GA/Gcoding-synon231000GENOMES,ABI,APPLERA_GI,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,HGBA20.296916
MTRR chr 578892157889216rs2287779+GA/Gcoding-synon161000GENOMES,AFFY,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PHARMGKB_PPII,SEA20.04965
MTRR chr 578930047893005rs34172797-CA/Gcoding-synon81000GENOMES,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,PHARMGKB_PPII,SI_EXO,20.019431
MTRR chr 578929327892933rs35890938-AC/Tcoding-synon81000GENOMES,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,PHARMGKB_PPII,SI_EXO,20.018837
MTRR chr 578970607897061rs6874544+TC/Tcoding-synon121000GENOMES,ABI,APPLERA_GI,BCM_SSAHASNP,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,EXOME_CHIP,ILLUMINA,NHLBI-ES20.018671
SARDH chr 9136536678136536679rs129932+GA/Gcoding-synon261000GENOMES,ACEVAN,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENS20.536276
SARDH chr 9136535746136535747rs145913342+GA/Gcoding-synon21000GENOMES,NHLBI-ESP,20.011019
SARDH chr 9136573411136573412rs2073815-GC/Tcoding-synon281000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENS20.538768
SARDH chr 9136561366136561367rs2502740+GA/Gcoding-synon181000GENOMES,APPLERA_GI,BCMHGSC_JDW,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,KRI20.25616
SARDH chr 9136536792136536793rs2519123-CC/Gcoding-synon211000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,CORNELL,ENSEMBL,GMI,HGSV,20.568133
SARDH chr 9136561447136561448rs35013479+GA/Gcoding-synon41000GENOMES,APPLERA_GI,ILLUMINA,NHLBI-ESP,20.014857
SARDH chr 9136595252136595253rs35457000+CC/Tcoding-synon51000GENOMES,APPLERA_GI,ILLUMINA,NHLBI-ESP,TISHKOFF,20.984715
SARDH chr 9136599145136599146rs573904+CC/Tcoding-synon161000GENOMES,BCM-HGSC-SUB,BGI,BL,CLINSEQ_SNP,CORNELL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,NHLBI-20.776438
SHMT1 chr 171823213518232136rs116100382+GA/Gcoding-synon51000GENOMES,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,TISHKOFF,20.018245
SHMT2 chr 125762601757626018rs11557166+CC/Tcoding-synon,nc111000GENOMES,CGAP-GAI,CLINSEQ_SNP,GMI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,SEATTLESEQ,SSMP,TISH20.976028
SHMT2 chr 125762658157626582rs2229716+GA/Gcoding-synon,nc111000GENOMES,BCM-HGSC-SUB,CGAP-GAI,CLINSEQ_SNP,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGE20.026497
SHMT2 chr 125762707357627074rs2229717+GG/Tcoding-synon,nc91000GENOMES,APPLERA_GI,CLINSEQ_SNP,GMI,ILLUMINA,NHLBI-ESP,SEATTLESEQ,SSMP,WICVAR,20.951922
SHMT2 chr 125762786157627862rs2229718+CC/Tcoding-synon,nc1WICVAR,20.962963
SLC19A1 chr 214695200546952006rs1051269-GC/Gcoding-synon81000GENOMES,CLINSEQ_SNP,ILLUMINA,KRIBB_YJKIM,LEE,NHLBI-ESP,PHARMGKB_AB_DME,SNP500CANCER,20.99
SLC19A1 chr 214695155546951556rs12659-AC/Tcoding-synon271000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GEN20.560144
SLC19A1 chr 214695086246950863rs79091853+CC/Tcoding-synon51000GENOMES,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,SSMP,20.981272
SLC46A1 chr 172673172426731725rs35257694+GA/Gcoding-synon2APPLERA_GI,NHLBI-ESP,20.014706
SLC46A1 chr 172673228826732289rs61732735+GC/Gcoding-synon1CORNELL,20.986486
TCN1 chr 115962343259623433rs1042613-GC/Tcoding-synon201000GENOMES,AFFY,APPLERA_GI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,LEE,MG20.703753
TCN2 chr 223101339231013393rs35997415+CC/Gcoding-synon1APPLERA_GI,20.986842
TCN2 chr 223101339831013399rs76802001+GA/Gcoding-synon41000GENOMES,CLINSEQ_SNP,ILLUMINA,NHLBI-ESP,20.022846
TYMS chr 18662246662247rs3786362-AC/Tcoding-synon111000GENOMES,CLINSEQ_SNP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PHARMGKB_AB_DME,SEATTLESEQ,SSMP,20.028828
TYMS chr 18658034658035rs77400748+AA/Gcoding-synon,in41000GENOMES,GMI,NHLBI-ESP,SSMP,20.977961