| Gene Symbol | Chromosome | Start | End | Name | Strand | Variation Type | PMID | Method | Sample Size | Observer Gain | Observed Loss |
|---|
| SHMT1 | chr17 | 18261148 | 18308015 | nsv511594 | + | loss | 21212237 | Sequencing, SNP array | 1 | 0 | 1 |
| SHMT2 | chr12 | 57623003 | 57726926 | nsv559048 | + | loss | 21841781 | Oligo aCGH, SNP array | 17421 | 0 | 1 |
| SHMT2 | chr12 | 57596553 | 57653627 | nsv733 | + | insertion | 18451855 | FISH, Multiple complete digestion, Oligo aCGH, Sequencing | 9 | 3 | 0 |
| SLC46A1 | chr17 | 26576213 | 26749754 | nsv833413 | + | gain+loss | 17160897 | BAC aCGH | 95 | 1 | 5 |
| TCN1 | chr11 | 59545459 | 59697136 | nsv832173 | + | gain | 17160897 | BAC aCGH | 95 | 1 | 0 |
| TCN1 | chr11 | 59570862 | 59731976 | nsv555150 | + | gain | 21841781 | Oligo aCGH, SNP array | 17421 | 1 | 0 |
| TCN1 | chr11 | 59570862 | 59731976 | nsv468579 | + | gain | 19166990 | Oligo aCGH, SNP array | 1557 | 1 | 0 |
| TCN2 | chr22 | 30816447 | 31118258 | esv2422247 | + | duplication | 17116639 | qPCR, SNP array | 181 | 1 | 0 |
| TCN2 | chr22 | 30820448 | 31007521 | nsv834178 | + | loss | 17160897 | BAC aCGH | 95 | 0 | 1 |
| TCN2 | chr22 | 30904273 | 31196934 | nsv588895 | + | gain | 21841781 | Oligo aCGH, SNP array | 17421 | 1 | 0 |
| TCN2 | chr22 | 30904273 | 31196934 | nsv459874 | + | gain | 19166990 | Oligo aCGH, SNP array | 1557 | 1 | 0 |
| TCN2 | chr22 | 31016430 | 31033283 | esv29367 | + | loss | 19812545 | Oligo aCGH | 40 | 0 | 1 |
| TCN2 | chr22 | 31018126 | 31018194 | esv1510625 | + | deletion | 17803354 | Merging, Oligo aCGH, Sequencing, SNP array | 2 | 0 | 1 |
| TYMS | chr18 | 59835 | 1496324 | nsv576228 | + | loss | 21841781 | Oligo aCGH, SNP array | 17421 | 0 | 1 |
| TYMS | chr18 | 341003 | 2228246 | dgv5810n54 | + | gain | 21841781 | Oligo aCGH, SNP array | 17421 | 3 | 0 |
| TYMS | chr18 | 541687 | 2230220 | nsv528169 | + | loss | 19592680 | SNP array | 2026 | 0 | 1 |
| TYMS | chr18 | 309175 | 784273 | nsv576236 | + | gain | 21841781 | Oligo aCGH, SNP array | 17421 | 1 | 0 |
| TYMS | chr18 | 384945 | 702037 | nsv576239 | + | gain | 21841781 | Oligo aCGH, SNP array | 17421 | 1 | 0 |
| TYMS | chr18 | 511330 | 715019 | nsv833577 | + | gain+loss | 17160897 | BAC aCGH | 95 | 14 | 1 |
| TYMS | chr18 | 557126 | 831321 | nsv576242 | + | gain | 21841781 | Oligo aCGH, SNP array | 17421 | 1 | 0 |
| TYMS | chr18 | 656608 | 658137 | esv2521731 | + | deletion | 19546169 | Sequencing | 1 | 0 | 1 |
| TYMS | chr18 | 656834 | 657624 | esv9315 | + | loss | 19470904 | Sequencing | 1 | 0 | 0 |
| TYMS | chr18 | 657751 | 659250 | esv3353997 | + | duplication | 20981092 | Digital array, Oligo aCGH, PCR, Sequencing | 185 | 1 | 0 |
| TYMS | chr18 | 667301 | 695598 | esv2758709 | + | loss | 17122850 | BAC aCGH, SNP array | 270 | 0 | 1 |
