Cobalamin SNPs in CpG Data

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Gene Symbol	Chromosome	CpG Start	CpG End	Name	SNP Start	SNP End	rsID	Strand	ref NCBI	Observed	No of CpGs	CpG%	GC%	Observed/Expected Ratio	Function
MTR	chr1	236958314	236959202	CpG: 84	236959081	236959082	rs10399834	+	C	C/T	571	18.9	64.3	0.92	intron
MTR	chr1	236958314	236959202	CpG: 84	236958802	236958803	rs111840642	+	C	C/G	571	18.9	64.3	0.92	untranslated-5
MTR	chr1	236958314	236959202	CpG: 84	236958382	236958383	rs28372868	+	A	A/C	571	18.9	64.3	0.92	near-gene-5
MTR	chr1	236958314	236959202	CpG: 84	236958477	236958478	rs28372869	+	T	A/T	571	18.9	64.3	0.92	near-gene-5
MTR	chr1	236958314	236959202	CpG: 84	236958514	236958515	rs28372870	+	C	C/T	571	18.9	64.3	0.92	near-gene-5
MTR	chr1	236958314	236959202	CpG: 84	236958531	236958532	rs28372871	+	G	G/T	571	18.9	64.3	0.92	near-gene-5
MTR	chr1	236958314	236959202	CpG: 84	236958936	236958937	rs3738547	-	C	A/G	571	18.9	64.3	0.92	untranslated-5
MMACHC	chr1	45965586	45966049	CpG: 33	45965702	45965703	rs3748643	+	G	G/T	258	14.3	55.7	0.92	near-gene-5,ncRNA
MMACHC	chr1	45965586	45966049	CpG: 33	45965770	45965771	rs3748644	+	A	A/G	258	14.3	55.7	0.92	near-gene-5
MMAB	chr12	110010994	110011599	CpG: 53	110011228	110011229	rs10774774	+	G	G/T	390	17.5	64.5	0.85	coding-synon,near-gene-5,
MMAB	chr12	110010994	110011599	CpG: 53	110011229	110011230	rs10774775	+	C	C/T	390	17.5	64.5	0.85	near-gene-5,ncRNA,missens
ABCD4	chr14	74769366	74769815	CpG: 47	74769729	74769730	rs72559441	+	G	A/G	312	20.9	69.5	0.87	ncRNA,untranslated-5
FUT2	chr19	49206443	49206818	CpG: 26	49206630	49206631	rs1047781	+	A	A/T	247	13.9	65.9	0.65	missense
FUT2	chr19	49206443	49206818	CpG: 26	49206726	49206727	rs1800025	+	G	A/G	247	13.9	65.9	0.65	missense
FUT2	chr19	49206443	49206818	CpG: 26	49206725	49206726	rs1800027	+	C	C/T	247	13.9	65.9	0.65	coding-synon
FUT2	chr19	49206443	49206818	CpG: 26	49206602	49206603	rs281377	+	C	C/T	247	13.9	65.9	0.65	coding-synon
FUT2	chr19	49206443	49206818	CpG: 26	49206560	49206561	rs28362836	+	C	C/T	247	13.9	65.9	0.65	coding-synon
FUT2	chr19	49206443	49206818	CpG: 26	49206673	49206674	rs601338	+	G	A/G	247	13.9	65.9	0.65	nonsense
FUT2	chr19	49206443	49206818	CpG: 26	49206461	49206462	rs681343	+	C	C/T	247	13.9	65.9	0.65	coding-synon
MMAA	chr4	146540053	146540656	CpG: 66	146540610	146540611	rs114699496	+	C	C/T	418	21.9	69.3	0.91	intron
MMAA	chr4	146540053	146540656	CpG: 66	146540156	146540157	rs117832435	+	G	A/G	418	21.9	69.3	0.91	near-gene-5
MMAA	chr4	146540053	146540656	CpG: 66	146540594	146540595	rs140592995	+	G	C/G	418	21.9	69.3	0.91	intron
MMAA	chr4	146540053	146540656	CpG: 66	146540225	146540226	rs78212696	+	C	C/T	418	21.9	69.3	0.91	near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869590	7869591	rs138374466	+	C	C/T	698	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869385	7869388	rs141755990	+	CC	-/CCT	698	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869383	7869386	rs150132234	+	CT	-/CTC	698	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869455	7869456	rs34828626	+	C	-/C	698	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7868865	7868866	rs3822445	-	G	C/G	698	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869234	7869235	rs72716536	+	T	C/T	698	23.7	71.4	0.94	near-gene-5,untranslated-
MTRR	chr5	7868863	7869840	CpG: 116	7869702	7869703	rs75772655	+	G	A/G	698	23.7	71.4	0.94	intron,near-gene-5
MTRR	chr5	7868863	7869840	CpG: 116	7869577	7869578	rs75888760	+	C	C/T	698	23.7	71.4	0.94	intron,near-gene-5
MUT	chr6	49430934	49431136	CpG: 20	49430973	49430974	rs3729619	-	T	A/T	122	19.8	60.4	1.1	near-gene-5,untranslated-
LMBRD1	chr6	70506292	70507024	CpG: 53	70506494	70506495	rs3752787	+	T	C/T	471	14.5	64.3	0.7	intron

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cobalamin

Cobalamin SNPs in CpG Data