Cobalamin SNP Data

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Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
TCN1	chr11	59630338	59630339	rs115442273	+	A	A/G	intron	2	1000GENOMES,TISHKOFF,	2	0.98824
TCN1	chr11	59631744	59631745	rs115485092	+	T	A/T	intron	2	1000GENOMES,TISHKOFF,	2	0.013502
TCN1	chr11	59633586	59633587	rs116127821	+	A	A/C	intron	2	1000GENOMES,TISHKOFF,	2	0.987369
TCN1	chr11	59628810	59628811	rs117699377	+	C	A/C	intron	2	1000GENOMES,ILLUMINA,	2	0.011749
TCN1	chr11	59626895	59626896	rs11822978	+	C	C/T	intron	6	1000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,	2	0.988575
TCN1	chr11	59627820	59627821	rs12269818	+	T	C/T	intron	3	1000GENOMES,COMPLETE_GENOMICS,SC_SNP,	2	0.015596
TCN1	chr11	59630950	59630951	rs138028612	+	C	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.988522
TCN1	chr11	59621700	59621704	rs145926120	+	AA	-/AAA	intron	2	1000GENOMES,LUNTER,	2	0.015151
TCN1	chr11	59627689	59627690	rs148040945	+	C	C/T	intron	1	1000GENOMES,	2	0.988981
TCN1	chr11	59620205	59620206	rs17154234	+	T	C/T	near-gene-3	10	1000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,SSMP,TISHKOFF,	2	0.126239
TCN1	chr11	59622589	59622589	rs199752274	+	-	-/T	intron	1	1000GENOMES,	2	0.980257
TCN1	chr11	59630835	59630836	rs2000613	+	G	G/T	intron	6	1000GENOMES,ABI,AFFY,ILLUMINA,SC_JCM,TSC-CSHL,	2	0.98405
TCN1	chr11	59623377	59623378	rs34324219	+	C	A/C	missense	12	1000GENOMES,APPLERA_GI,BCM-HGSC-SUB,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SNP500CANCER,TISHKOFF,	2	0.085682
TCN1	chr11	59631534	59631535	rs34528912	+	C	C/T	missense	7	1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,	2	0.971403
TCN1	chr11	59624535	59624536	rs519221	+	A	A/T	intron	14	1000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,KWOK,PJP,SC_JCM,SNP500CANCER,SSMP,TISHKOFF,	2	0.763132
TCN1	chr11	59633492	59633493	rs526934	+	G	A/G	intron	24	1000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PAGE_STUDY,PERLEGEN,PJP,SC_JCM,SC_SNP,SNP500CANCER,SSMP,	2	0.79497
TCN1	chr11	59629304	59629305	rs557564	+	C	C/T	intron	14	1000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SNP500CANCER,SSMP,TISHKOFF,	4	0.002689
TCN1	chr11	59627211	59627212	rs56807325	+	T	A/T	intron	6	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.060467
TCN1	chr11	59632272	59632273	rs61903593	+	A	A/G	intron	3	1000GENOMES,BCMHGSC_JDW,ILLUMINA,	2	0.986685
TCN1	chr11	59632209	59632210	rs73490907	+	A	A/G	intron	6	1000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.938159
TCN1	chr11	59628714	59628715	rs74612762	+	C	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.978223
TCN1	chr11	59624196	59624197	rs75575106	+	G	C/G	intron	2	1000GENOMES,TISHKOFF,	2	0.010017
TCN1	chr11	59628256	59628257	rs77232416	+	G	A/G	intron	2	1000GENOMES,ILLUMINA,	2	0.019582
TCN1	chr11	59621083	59621084	rs77529726	+	G	C/G	intron	4	1000GENOMES,BUSHMAN,SSMP,TISHKOFF,	2	0.046725
TCN1	chr11	59621009	59621010	rs78136883	+	G	G/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,	2	0.965691
TCN1	chr11	59628106	59628107	rs78157647	+	T	G/T	intron	2	1000GENOMES,BUSHMAN,	2	0.01055
TCN1	chr11	59628687	59628688	rs78756297	+	G	G/T	intron	2	1000GENOMES,BCM-HGSC-SUB,	2	0.983014
TCN1	chr11	59628092	59628093	rs79549875	+	A	A/C	intron	3	1000GENOMES,ILLUMINA,TISHKOFF,	2	0.977787
TCN1	chr11	59633344	59633345	rs80029954	+	G	C/G	intron	3	1000GENOMES,GMI,SSMP,	2	0.021323
TCN1	chr11	59619930	59619931	rs80088671	+	C	C/T	near-gene-3	1	1000GENOMES,	2	0.989983

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