Cobalamin SNP Data


Gene SymbolChromosomeStartEndrs IDStrandNCBI refObservedFunctionSubmitter CountSubmitterFrequency CountAllele Frequency
MUTchr64942354649423547rs6915187+GC/Gintron121000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,20.531593
MUTchr64940634749406348rs6918347+AA/Gintron161000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,20.471622
MUTchr64941986349419864rs6923124+AA/Gintron141000GENOMES,AFFY,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,ENSEMBL,GMI,KRIBB_YJKIM,PJP,SC_SNP,SSMP,20.682086
MUTchr64940621649406217rs6941276+TA/Tintron61000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,GMI,SSMP,TISHKOFF,20.202287
MUTchr64939833349398333rs71777574+--/Tuntranslated-391000GENOMES,BGI,BILGI_BIOE,BL,DEVINE_LAB,GMI,LUNTER,SSMP,TISHKOFF,20.68641
MUTchr64942299049422991rs72855809+TC/Tintron41000GENOMES,BCM-HGSC-SUB,GMI,SSMP,20.209385
MUTchr64941188549411886rs74987455+GA/Gintron11000GENOMES,20.082299
MUTchr64941691749416918rs75427872+TC/Tintron11000GENOMES,20.020906
MUTchr64941873349418734rs75539619+GA/Gintron41000GENOMES,GMI,ILLUMINA,SSMP,20.042646
MUTchr64942868549428686rs75916297+TG/Tintron31000GENOMES,ILLUMINA,TISHKOFF,20.020906
MUTchr64941188649411887rs76804522+GG/Tintron21000GENOMES,ILLUMINA,20.917287
MUTchr64940040349400404rs76821511+TC/Tintron21000GENOMES,TISHKOFF,20.020906
MUTchr64942249049422491rs77005759+GG/Tintron11000GENOMES,20.988676
MUTchr64941147649411477rs7744595+GC/Gintron151000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PERLEGEN,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,20.321413
MUTchr64943008149430082rs7750918+CC/Gintron,near-gene-5131000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SSMP,TISHKOFF,WI_SSAHASNP,20.734796
MUTchr64942601749426018rs7767725+GA/Gintron151000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,20.53312
MUTchr64942124049421241rs7769646+GA/Gintron141000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,GMI,HGSV,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,WI_SSAHASNP,20.322806
MUTchr64940824149408242rs78100773+GA/Gintron21000GENOMES,TISHKOFF,20.017857
MUTchr64940118049401181rs79114016+TA/Tintron21000GENOMES,TISHKOFF,20.020906
MUTchr64940014249400143rs79527231+CC/Gintron71000GENOMES,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SSMP,TISHKOFF,20.737637
MUTchr64940149849401499rs79666796+TC/Tintron41000GENOMES,BL,GMI,ILLUMINA,20.016956
MUTchr64940328149403282rs8589-TA/Gmissense271000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BL,BUSHMAN,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,ILLUMINA,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PERLEG40.338245
MUTchr64941423449414235rs9296616+TG/Tintron111000GENOMES,BCM-HGSC-SUB,BGI,COMPLETE_GENOMICS,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,WUGSC_SSAHASNP,20.256923
MUTchr64942835949428360rs9296617+GC/Gintron141000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,WI_SSAHASNP,20.319354
MUTchr64939998349399984rs9367355+GA/Gintron101000GENOMES,AFFY,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,KRIBB_YJKIM,PJP,SC_SNP,SI_EXO,SSMP,20.09821
MUTchr64940022249400223rs9367356+TC/Tintron121000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,20.502517
MUTchr64942157849421579rs9369901+GA/Gintron61000GENOMES,BCM-HGSC-SUB,BUSHMAN,GMI,SC_SNP,SSMP,20.206327
MUTchr64942970549429706rs9369902+CA/Cintron,near-gene-571000GENOMES,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,SSMP,20.10024
MUTchr64939811449398115rs9381784+CC/Tuntranslated-3151000GENOMES,ABI,BGI,BL,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,20.637395
MUTchr64940023649400237rs9381785+GA/Gintron151000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BL,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,20.455876
MUTchr64941227449412275rs9381786+TG/Tintron111000GENOMES,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,SC_SNP,SI_EXO,SSMP,TISHKOFF,20.202596
MUTchr64941324349413244rs9381787+GC/Gintron111000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_SNP,SSMP,TISHKOFF,20.526762
MUTchr64941328849413289rs9381788+GA/Gintron101000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_SNP,SSMP,20.523831
MUTchr64941339049413391rs9381789+GC/Gintron111000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_SNP,SSMP,TISHKOFF,20.52429
MUTchr64942160649421607rs9395492+GA/Gintron121000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,PJP,SC_SNP,SSMP,TISHKOFF,20.538919
MUTchr64942740849427409rs9395493+TC/Tintron161000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,PJP,SC_SNP,SI_EXO,SSMP,TISHKOFF,20.536923
MUTchr64940079449400795rs9463480+GG/Tintron111000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,SC_SNP,SSMP,TISHKOFF,20.69151
MUTchr64940706849407069rs9463482+TC/Tintron101000GENOMES,ABI,BCMHGSC_JDW,BL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,20.516971
MUTchr64940984749409848rs9463483+TA/Tintron101000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,GMI,PJP,SC_SNP,SSMP,20.309937
MUTchr64940948649409487rs9473555+GC/Gintron131000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,PJP,SC_SNP,SSMP,20.30698
MUTchr64940973649409737rs9473557+TC/Tintron121000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BUSHMAN,CLINSEQ_SNP,ENSEMBL,GMI,PJP,SC_SNP,SI_EXO,SSMP,20.33005
MUTchr64942284749422848rs9473559+TA/Tintron61000GENOMES,BCMHGSC_JDW,BGI,GMI,SC_SNP,SSMP,20.236593
MUTchr64942791749427918rs9473560+AA/Gintron141000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,PJP,SC_SNP,SSMP,TISHKOFF,20.681941
MUTchr64942875449428755rs9473561+GA/Gintron151000GENOMES,BCM-HGSC-SUB,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,PJP,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WI_SSAHASNP,20.320478
TCN1chr115962343259623433rs1042613-GC/Tcoding-synon201000GENOMES,AFFY,APPLERA_GI,BL,BUSHMAN,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,LEE,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,SC_JCM,SEATTLESEQ,SNP500CANCER,SSMP,TISHKOFF,WI_SSAHASNP,20.703753
TCN1chr115963310959633110rs112170721+A-/Aintron31000GENOMES,BUSHMAN,LUNTER,20.010092
TCN1chr115963077259630772rs113003128+--/Aintron41000GENOMES,BUSHMAN,LUNTER,TISHKOFF,20.93945
TCN1chr115962318659623187rs113149545+AA/Tintron31000GENOMES,BUSHMAN,TISHKOFF,20.988991
TCN1chr115962640759626408rs113348812+GA/Gintron31000GENOMES,BUSHMAN,TISHKOFF,20.011009
TCN1chr115962427359624274rs114817661+CC/Tintron21000GENOMES,TISHKOFF,20.989983
TCN1chr115963033859630339rs115442273+AA/Gintron21000GENOMES,TISHKOFF,20.98824
TCN1chr115963174459631745rs115485092+TA/Tintron21000GENOMES,TISHKOFF,20.013502
TCN1chr115963358659633587rs116127821+AA/Cintron21000GENOMES,TISHKOFF,20.987369
TCN1chr115962881059628811rs117699377+CA/Cintron21000GENOMES,ILLUMINA,20.011749
TCN1chr115962689559626896rs11822978+CC/Tintron61000GENOMES,ABI,CSHL-HAPMAP,ENSEMBL,ILLUMINA,KRIBB_YJKIM,20.988575
TCN1chr115962782059627821rs12269818+TC/Tintron31000GENOMES,COMPLETE_GENOMICS,SC_SNP,20.015596
TCN1chr115963095059630951rs138028612+CC/Tintron21000GENOMES,TISHKOFF,20.988522
TCN1chr115962170059621704rs145926120+AA-/AAAintron21000GENOMES,LUNTER,20.015151
TCN1chr115962768959627690rs148040945+CC/Tintron11000GENOMES,20.988981
TCN1chr115962020559620206rs17154234+TC/Tnear-gene-3101000GENOMES,AFFY,BUSHMAN,HGSV,ILLUMINA,KRIBB_YJKIM,PERLEGEN,SNP500CANCER,SSMP,TISHKOFF,20.126239
TCN1chr115962258959622589rs199752274+--/Tintron11000GENOMES,20.980257
TCN1chr115963083559630836rs2000613+GG/Tintron61000GENOMES,ABI,AFFY,ILLUMINA,SC_JCM,TSC-CSHL,20.98405
TCN1chr115962337759623378rs34324219+CA/Cmissense121000GENOMES,APPLERA_GI,BCM-HGSC-SUB,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,SEATTLESEQ,SNP500CANCER,TISHKOFF,20.085682
TCN1chr115963153459631535rs34528912+CC/Tmissense71000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,ILLUMINA,NHLBI-ESP,PERLEGEN,20.971403
TCN1chr115962453559624536rs519221+AA/Tintron141000GENOMES,ABI,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,HGSV,ILLUMINA,KWOK,PJP,SC_JCM,SNP500CANCER,SSMP,TISHKOFF,20.763132
TCN1chr115963349259633493rs526934+GA/Gintron241000GENOMES,ABI,AFFY,BCMHGSC_JDW,BGI,BL,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PAGE_STUDY,PERLEGEN,PJP,SC_JCM,SC_SNP,SNP500CANCER,SSMP,20.79497
TCN1chr115962930459629305rs557564+CC/Tintron141000GENOMES,AFFY,BL,BUSHMAN,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,KWOK,SC_JCM,SC_SNP,SNP500CANCER,SSMP,TISHKOFF,40.002689
TCN1chr115962721159627212rs56807325+TA/Tintron61000GENOMES,BUSHMAN,COMPLETE_GENOMICS,HGSV,ILLUMINA-UK,TISHKOFF,20.060467
TCN1chr115963227259632273rs61903593+AA/Gintron31000GENOMES,BCMHGSC_JDW,ILLUMINA,20.986685
TCN1chr115963220959632210rs73490907+AA/Gintron61000GENOMES,BUSHMAN,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,TISHKOFF,20.938159
TCN1chr115962871459628715rs74612762+CC/Tintron21000GENOMES,TISHKOFF,20.978223
TCN1chr115962419659624197rs75575106+GC/Gintron21000GENOMES,TISHKOFF,20.010017
TCN1chr115962825659628257rs77232416+GA/Gintron21000GENOMES,ILLUMINA,20.019582
TCN1chr115962108359621084rs77529726+GC/Gintron41000GENOMES,BUSHMAN,SSMP,TISHKOFF,20.046725
TCN1chr115962100959621010rs78136883+GG/Tintron41000GENOMES,BUSHMAN,ILLUMINA,TISHKOFF,20.965691
TCN1chr115962810659628107rs78157647+TG/Tintron21000GENOMES,BUSHMAN,20.01055
TCN1chr115962868759628688rs78756297+GG/Tintron21000GENOMES,BCM-HGSC-SUB,20.983014
TCN1chr115962809259628093rs79549875+AA/Cintron31000GENOMES,ILLUMINA,TISHKOFF,20.977787
TCN1chr115963334459633345rs80029954+GC/Gintron31000GENOMES,GMI,SSMP,20.021323
TCN1chr115961993059619931rs80088671+CC/Tnear-gene-311000GENOMES,20.989983