Cobalamin SNP Data

Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ABCD4	chr14	74754238	74754240	rs3837654	-	AG	-/CT	intron	7	1000GENOMES,BILGI_BIOE,GMI,LUNTER,SSMP,TISHKOFF,YUSUKE,	2	0.26079
ABCD4	chr14	74769301	74769302	rs4148073	-	C	A/G	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,PJP,RIKENSNPRC,SSAHASNP,SSMP,TISHKOFF,	2	0.659205
ABCD4	chr14	74769248	74769249	rs4148074	-	A	C/T	intron	13	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,PERLEGEN,PJP,RIKENSNPRC,SSMP,TISHKOFF,	2	0.260103
ABCD4	chr14	74762762	74762763	rs4148075	-	C	G/T	intron	3	1000GENOMES,RIKENSNPRC,SSMP,	2	0.979134
ABCD4	chr14	74761610	74761611	rs4148076	-	C	A/G	intron	6	1000GENOMES,BUSHMAN,GMI,ILLUMINA,RIKENSNPRC,SSMP,	2	0.023462
ABCD4	chr14	74759476	74759477	rs4148077	-	C	A/G	ncRNA,missense	19	1000GENOMES,AFFY,APPLERA_GI,BCM-HGSC-SUB,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,EXOME_CHIP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,RIKENSNPRC,SEATTLESEQ,SSMP,TISHKOFF,WI_SSAHASNP,	2	0.291266
ABCD4	chr14	74759300	74759301	rs4148078	-	G	A/C	coding-synon,ncRNA	18	1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,CANCER-GENOME,CLINSEQ_SNP,COMPLETE_GENOMICS,GMI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,RIKENSNPRC,SEATTLESEQ,SSMP,TISHKOFF,	2	0.280855
ABCD4	chr14	74756467	74756468	rs4148079	-	T	A/G	intron	6	1000GENOMES,ILLUMINA,KRIBB_YJKIM,PERLEGEN,RIKENSNPRC,SSMP,	2	0.971731
ABCD4	chr14	74753664	74753665	rs4148080	-	G	C/G	intron	5	1000GENOMES,BUSHMAN,GMI,RIKENSNPRC,SSMP,	2	0.976514
ABCD4	chr14	74752983	74752984	rs4148081	-	C	A/G	ncRNA,untranslated-3	6	1000GENOMES,CGAP-GAI,GMI,ILLUMINA,RIKENSNPRC,SSMP,	2	0.023499
ABCD4	chr14	74752029	74752030	rs45446193	+	G	A/G	ncRNA,untranslated-3	4	1000GENOMES,BL,ILLUMINA,SI_EXO,	2	0.020453
ABCD4	chr14	74752060	74752061	rs55693829	+	T	C/T	ncRNA,untranslated-3	5	1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,SSMP,	2	0.02844
ABCD4	chr14	74755631	74755632	rs55737040	+	T	C/T	intron	4	1000GENOMES,BUSHMAN,HGSV,TISHKOFF,	2	0.060495
ABCD4	chr14	74755676	74755677	rs55807426	+	A	A/T	intron	2	1000GENOMES,HGSV,	2	0.933798
ABCD4	chr14	74751083	74751084	rs55886024	+	G	A/G	unknown	4	1000GENOMES,BUSHMAN,HGSV,TISHKOFF,	2	0.064679
ABCD4	chr14	74751039	74751040	rs56137341	+	A	A/G	unknown	4	1000GENOMES,BUSHMAN,HGSV,TISHKOFF,	2	0.942202
ABCD4	chr14	74763453	74763454	rs56188138	+	T	C/T	intron	4	1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74755640	74755641	rs56200118	+	G	C/G	intron	4	1000GENOMES,BUSHMAN,HGSV,TISHKOFF,	2	0.05912
ABCD4	chr14	74752660	74752661	rs56936023	+	G	A/G	ncRNA,untranslated-3	5	1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.06055
ABCD4	chr14	74752166	74752167	rs56962361	+	T	C/T	ncRNA,untranslated-3	5	1000GENOMES,COMPLETE_GENOMICS,HGSV,ILLUMINA,TISHKOFF,	2	0.020165
ABCD4	chr14	74754756	74754757	rs56986616	+	A	A/G	intron	5	1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.938645
ABCD4	chr14	74761239	74761240	rs57458177	+	T	C/T	intron	5	1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.06144
ABCD4	chr14	74763709	74763710	rs57497554	+	G	C/G	intron	4	1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74754935	74754936	rs57773157	+	G	A/G	coding-synon,ncRNA	10	1000GENOMES,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.067124
ABCD4	chr14	74766359	74766360	rs58272575	+	T	C/T	intron,missense	11	1000GENOMES,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.069236
ABCD4	chr14	74765162	74765163	rs58453408	+	G	A/G	intron	3	1000GENOMES,HGSV,TISHKOFF,	2	0.060606
ABCD4	chr14	74760382	74760383	rs58534984	+	C	C/T	intron	10	1000GENOMES,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,PJP,SSMP,TISHKOFF,	2	0.73489
ABCD4	chr14	74763786	74763787	rs58920669	+	C	C/G	intron	4	1000GENOMES,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.938991
ABCD4	chr14	74761474	74761475	rs59461095	+	G	A/G	intron	5	1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.061813
ABCD4	chr14	74763835	74763836	rs59888910	+	G	A/G	intron	5	1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74763819	74763820	rs59895281	+	T	C/T	intron	5	1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74752502	74752503	rs59974452	+	G	A/G	ncRNA,untranslated-3	5	1000GENOMES,HGSV,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.06055
ABCD4	chr14	74758621	74758622	rs60021281	+	G	A/G	intron	4	1000GENOMES,COMPLETE_GENOMICS,HGSV,TISHKOFF,	2	0.013761
ABCD4	chr14	74755675	74755676	rs60940187	+	A	A/G	intron	2	1000GENOMES,HGSV,	2	0.93554
ABCD4	chr14	74761457	74761458	rs61486287	+	A	A/G	intron	5	1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.93913
ABCD4	chr14	74764674	74764675	rs61744947	+	G	A/G	ncRNA,missense	10	1000GENOMES,BUSHMAN,CLINSEQ_SNP,CORNELL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.066844
ABCD4	chr14	74762549	74762550	rs61757464	+	G	A/G	intron	8	1000GENOMES,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.039724
ABCD4	chr14	74761695	74761696	rs7144142	+	G	A/G	intron	5	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.063945
ABCD4	chr14	74761723	74761724	rs7144157	+	G	A/G	intron	6	1000GENOMES,BCM_SSAHASNP,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,	2	0.046368
ABCD4	chr14	74765550	74765551	rs7146270	+	C	C/T	intron	4	1000GENOMES,BCM_SSAHASNP,ILLUMINA-UK,TISHKOFF,	2	0.949231
ABCD4	chr14	74765777	74765778	rs7146792	+	C	C/T	intron	5	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.949176
ABCD4	chr14	74765880	74765881	rs7146976	+	C	C/T	intron	5	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.948925
ABCD4	chr14	74765767	74765768	rs7147099	+	G	A/G	intron	6	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.05
ABCD4	chr14	74765781	74765782	rs7147109	+	G	A/G	intron	4	1000GENOMES,BCM_SSAHASNP,BUSHMAN,TISHKOFF,	2	0.050618
ABCD4	chr14	74765911	74765912	rs7147301	+	G	A/G	intron	4	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,	2	0.051075
ABCD4	chr14	74765481	74765482	rs7147545	+	T	C/T	intron	4	1000GENOMES,BCM_SSAHASNP,ILLUMINA-UK,TISHKOFF,	2	0.063125
ABCD4	chr14	74761982	74761983	rs7148875	+	G	C/G	intron	5	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.064043
ABCD4	chr14	74766088	74766089	rs7151642	+	C	C/T	intron	5	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.936252
ABCD4	chr14	74766687	74766688	rs7152717	+	C	C/T	intron	4	1000GENOMES,BCM_SSAHASNP,BUSHMAN,TISHKOFF,	2	0.967446
ABCD4	chr14	74767127	74767128	rs7158118	+	G	A/G	intron	18	1000GENOMES,BCM-HGSC-SUB,BCM_SSAHASNP,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,SSAHASNP,SSMP,TISHKOFF,	2	0.677277
ABCD4	chr14	74758777	74758778	rs7158376	+	G	C/G	intron	6	1000GENOMES,AFFY,BCM_SSAHASNP,BUSHMAN,KRIBB_YJKIM,TISHKOFF,	2	0.095479
ABCD4	chr14	74769729	74769730	rs72559441	+	G	A/G	ncRNA,untranslated-5	3	1000GENOMES,ILLUMINA,PHARMGKB_PMT,	2	0.014831
ABCD4	chr14	74757364	74757365	rs72730107	+	A	A/G	intron	3	1000GENOMES,COMPLETE_GENOMICS,TISHKOFF,	2	0.979835
ABCD4	chr14	74751273	74751274	rs74061796	+	T	C/T	unknown	2	1000GENOMES,ILLUMINA-UK,	2	0.02844
ABCD4	chr14	74751302	74751303	rs74061797	+	C	A/C	unknown	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.059174
ABCD4	chr14	74754502	74754503	rs74061801	+	G	A/G	intron	7	1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.043863
ABCD4	chr14	74754600	74754601	rs74061802	+	T	G/T	intron	7	1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.04185
ABCD4	chr14	74756247	74756248	rs74063804	+	A	A/G	intron	7	1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.960828
ABCD4	chr14	74758315	74758316	rs74063806	+	C	C/G	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.938991
ABCD4	chr14	74758572	74758573	rs74063807	+	C	C/T	intron	5	1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.938588
ABCD4	chr14	74758604	74758605	rs74063808	+	G	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061813
ABCD4	chr14	74758622	74758623	rs74063809	+	G	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061813
ABCD4	chr14	74759121	74759122	rs74063810	+	G	A/G	intron	6	1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.061813
ABCD4	chr14	74759174	74759175	rs74063811	+	T	C/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061813
ABCD4	chr14	74759201	74759202	rs74063813	+	G	G/T	intron	6	1000GENOMES,BUSHMAN,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.938187
ABCD4	chr14	74759584	74759585	rs74063815	+	C	C/G	intron	7	1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.960573
ABCD4	chr14	74759654	74759655	rs74063816	+	G	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061813
ABCD4	chr14	74759721	74759722	rs74063817	+	C	C/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.938588
ABCD4	chr14	74759731	74759732	rs74063818	+	T	C/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74760073	74760074	rs74063819	+	A	A/C	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.938588
ABCD4	chr14	74760085	74760086	rs74063820	+	G	C/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061412
ABCD4	chr14	74760400	74760401	rs74063821	+	T	C/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.061927
ABCD4	chr14	74760586	74760587	rs74063822	+	G	A/G	intron	2	1000GENOMES,ILLUMINA-UK,	2	0.013303
ABCD4	chr14	74760733	74760734	rs74063823	+	C	C/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.938991
ABCD4	chr14	74761082	74761083	rs74063825	+	C	C/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.938991
ABCD4	chr14	74761102	74761103	rs74063826	+	C	C/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.955046
ABCD4	chr14	74762769	74762770	rs74063830	+	A	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.938187
ABCD4	chr14	74762855	74762856	rs74063831	+	T	C/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061813
ABCD4	chr14	74764085	74764086	rs74063833	+	G	G/T	intron	4	1000GENOMES,ILLUMINA,ILLUMINA-UK,TISHKOFF,	2	0.938532
ABCD4	chr14	74764335	74764336	rs74063835	+	G	A/G	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.061927
ABCD4	chr14	74764407	74764408	rs74063838	+	G	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.061412
ABCD4	chr14	74764584	74764585	rs74063839	+	A	A/T	intron	6	1000GENOMES,BUSHMAN,CLINSEQ_SNP,ILLUMINA-UK,NHLBI-ESP,TISHKOFF,	2	0.960531
ABCD4	chr14	74764913	74764914	rs74063840	+	T	G/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74764925	74764926	rs74063842	+	G	A/G	intron	4	1000GENOMES,ILLUMINA-UK,SSMP,TISHKOFF,	2	0.079358
ABCD4	chr14	74765960	74765961	rs74063848	+	T	C/T	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.048535
ABCD4	chr14	74754045	74754046	rs74336766	+	A	A/G	intron	4	1000GENOMES,BUSHMAN,ILLUMINA-UK,TISHKOFF,	2	0.939019
ABCD4	chr14	74760201	74760202	rs74637421	+	G	A/G	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.015596
ABCD4	chr14	74754018	74754019	rs75593934	+	A	A/G	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.940367
ABCD4	chr14	74751751	74751752	rs76135867	+	G	A/G	near-gene-3	2	1000GENOMES,SSMP,	2	0.020017
ABCD4	chr14	74761409	74761410	rs76818718	+	T	C/T	intron	6	1000GENOMES,BUSHMAN,GMI,ILLUMINA,SSMP,TISHKOFF,	2	0.034862
ABCD4	chr14	74764271	74764272	rs77059299	+	T	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.015679
ABCD4	chr14	74766452	74766453	rs78016754	+	C	C/T	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.984404
ABCD4	chr14	74767413	74767414	rs78131868	+	T	C/T	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.032125
ABCD4	chr14	74768169	74768169	rs78208257	+	-	-/A	intron	9	1000GENOMES,BILGI_BIOE,DEVINE_LAB,GMI,HGSV,HUMANGENOME_JCVI,LUNTER,SSMP,TISHKOFF,	2	0.312844
ABCD4	chr14	74760812	74760813	rs79149184	+	T	C/T	intron	3	1000GENOMES,ILLUMINA-UK,TISHKOFF,	2	0.061009
ABCD4	chr14	74756415	74756416	rs79567228	+	T	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.013066
ABCD4	chr14	74753705	74753706	rs8011290	+	A	A/C	intron	6	1000GENOMES,BUSHMAN,HGSV,ILLUMINA-UK,TISHKOFF,WI_SSAHASNP,	2	0.937788
ABCD4	chr14	74752975	74752976	rs8618	-	G	C/T	ncRNA,untranslated-3	10	1000GENOMES,BCM_SSAHASNP,BUSHMAN,CGAP-GAI,COMPLETE_GENOMICS,ILLUMINA,ILLUMINA-UK,LEE,PJP,TISHKOFF,	2	0.935675
CUBN	chr10	17133942	17133943	rs10159546	+	T	C/T	intron	13	1000GENOMES,BCMHGSC_JDW,BL,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,SC_SNP,SSAHASNP,SSMP,TISHKOFF,WUGSC_SSAHASNP,	2	0.546989
CUBN	chr10	17141951	17141952	rs1033765	-	C	G/T	intron	22	1000GENOMES,ABI,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,PJP,SC_SNP,SSAHASNP,SSMP,TSC-CSHL,WI_SSAHAS	2	0.319562

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